Wall clock time and date at job start Tue Mar 31 2020 14:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34233 * 116.99851 * 2 1 4 4 O 1.20827 * 119.99430 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99949 * 179.97438 * 3 2 1 6 6 N 1.46897 * 109.46911 * 176.19694 * 5 3 2 7 7 C 1.46908 * 110.99844 * 299.11003 * 6 5 3 8 8 C 1.50700 * 109.46794 * 293.95612 * 7 6 5 9 9 H 1.07996 * 120.00518 * 0.02562 * 8 7 6 10 10 C 1.37887 * 119.99872 * 179.97438 * 8 7 6 11 11 N 1.31519 * 119.99644 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00150 * 180.02562 * 10 8 7 13 13 H 1.48505 * 109.46879 * 90.00065 * 12 10 8 14 14 H 1.48499 * 109.47073 * 210.00395 * 12 10 8 15 15 H 1.48500 * 109.46870 * 330.00327 * 12 10 8 16 16 C 1.46892 * 111.00351 * 63.06390 * 6 5 3 17 17 C 1.50698 * 109.47109 * 76.02203 * 16 6 5 18 18 C 1.38180 * 119.94464 * 264.67118 * 17 16 6 19 19 C 1.38772 * 120.05442 * 179.76479 * 18 17 16 20 20 O 1.35896 * 120.02580 * 180.27861 * 19 18 17 21 21 C 1.42902 * 116.99787 * 180.25859 * 20 19 18 22 22 C 1.38637 * 119.94347 * 0.53187 * 19 18 17 23 23 C 1.38633 * 119.89210 * 359.72616 * 22 19 18 24 24 O 1.35895 * 120.02526 * 179.97438 * 23 22 19 25 25 C 1.42895 * 117.00359 * 0.02562 * 24 23 22 26 26 C 1.38174 * 119.94669 * 84.94579 * 17 16 6 27 27 H 1.08997 * 109.47606 * 300.00276 * 1 2 3 28 28 H 1.09004 * 109.47057 * 60.00888 * 1 2 3 29 29 H 1.09002 * 109.47111 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46883 * 296.19415 * 5 3 2 31 31 H 1.09001 * 109.47195 * 56.19391 * 5 3 2 32 32 H 1.08995 * 109.47102 * 53.95270 * 7 6 5 33 33 H 1.08992 * 109.46984 * 173.95799 * 7 6 5 34 34 H 0.96996 * 119.99801 * 179.97438 * 11 10 8 35 35 H 1.09003 * 109.47107 * 196.01676 * 16 6 5 36 36 H 1.08998 * 109.47120 * 316.02116 * 16 6 5 37 37 H 1.07997 * 119.96875 * 0.02562 * 18 17 16 38 38 H 1.09002 * 109.47080 * 180.02562 * 21 20 19 39 39 H 1.09004 * 109.47268 * 299.99625 * 21 20 19 40 40 H 1.08997 * 109.47768 * 59.99766 * 21 20 19 41 41 H 1.08001 * 120.05343 * 179.74335 * 22 19 18 42 42 H 1.09002 * 109.47492 * 179.97438 * 25 24 23 43 43 H 1.09000 * 109.47242 * 300.00614 * 25 24 23 44 44 H 1.09005 * 109.47022 * 60.00311 * 25 24 23 45 45 H 1.07998 * 119.97109 * 359.97438 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9829 2.6806 -0.0914 7 6 3.4970 3.2934 -1.3350 8 6 4.1727 2.6412 -2.5137 9 1 4.8908 1.8504 -2.3549 10 6 3.8733 3.0535 -3.7949 11 7 2.9976 4.0155 -3.9883 12 14 4.7102 2.2446 -5.2560 13 1 3.9034 1.0826 -5.7077 14 1 4.8286 3.2259 -6.3642 15 1 6.0639 1.7824 -4.8574 16 6 3.5318 3.4412 1.0815 17 6 4.4091 3.1118 2.2617 18 6 4.0180 2.1388 3.1615 19 6 4.8264 1.8302 4.2464 20 8 4.4438 0.8692 5.1279 21 6 5.3224 0.6078 6.2242 22 6 6.0220 2.5067 4.4331 23 6 6.4096 3.4862 3.5319 24 8 7.5808 4.1513 3.7125 25 6 8.3632 3.7897 4.8523 26 6 5.6005 3.7871 2.4453 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 3.9525 0.8411 0.9230 31 1 3.9594 0.7228 -0.8531 32 1 2.4187 3.1540 -1.4116 33 1 3.7262 4.3589 -1.3287 34 1 2.7872 4.3058 -4.8896 35 1 3.5949 4.5084 0.8686 36 1 2.4996 3.1768 1.3110 37 1 3.0844 1.6152 3.0180 38 1 4.8994 -0.1788 6.8492 39 1 6.2923 0.2871 5.8441 40 1 5.4458 1.5151 6.8154 41 1 6.6505 2.2708 5.2791 42 1 9.2697 4.3945 4.8775 43 1 7.7849 3.9630 5.7598 44 1 8.6321 2.7353 4.7887 45 1 5.9021 4.5500 1.7429 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065296068.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:02 Heat of formation + Delta-G solvation = -138.256572 kcal Electronic energy + Delta-G solvation = -28091.956451 eV Core-core repulsion = 24075.440852 eV Total energy + Delta-G solvation = -4016.515600 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.87076 -41.39726 -39.75039 -38.99844 -37.59906 -36.58978 -34.65946 -32.17570 -31.29312 -30.31520 -29.24297 -28.57263 -27.74512 -27.40104 -25.68553 -23.45513 -23.38009 -22.17449 -21.32231 -19.46809 -18.71366 -18.34726 -17.94332 -17.62147 -17.24214 -17.02997 -16.96534 -16.90352 -16.64030 -16.35569 -16.00737 -15.63422 -15.58609 -15.08128 -14.68113 -14.20870 -14.13086 -14.04184 -13.54647 -13.20790 -13.14604 -12.94656 -12.93736 -12.76708 -12.65881 -12.52069 -12.42798 -12.37037 -12.15395 -12.10694 -11.88734 -11.81251 -11.64832 -11.42048 -11.23635 -10.59191 -9.61842 -9.12361 -8.97318 -8.16993 -6.27503 0.27423 0.47795 1.22645 1.42582 1.44268 1.55880 1.88631 2.27625 2.37290 2.41647 2.65771 3.15603 3.28393 3.73168 3.95521 4.00979 4.09376 4.13628 4.25338 4.29047 4.31928 4.34504 4.35720 4.39823 4.42050 4.44839 4.50041 4.60588 4.66561 4.72262 4.75248 4.77961 4.86905 5.18077 5.20453 5.24842 5.27788 5.51235 5.58366 5.62327 5.66724 5.99606 6.13512 6.24040 6.45098 6.54788 6.81653 6.88186 7.41110 8.94059 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.011554 B = 0.003977 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.823047 B = 7037.926247 C = 8727.961737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.368 6.368 3 C 0.434 3.566 4 O -0.531 6.531 5 C 0.070 3.930 6 N -0.500 5.500 7 C 0.192 3.808 8 C -0.525 4.525 9 H 0.071 0.929 10 C 0.001 3.999 11 N -0.935 5.935 12 Si 0.968 3.032 13 H -0.273 1.273 14 H -0.285 1.285 15 H -0.260 1.260 16 C 0.079 3.921 17 C 0.007 3.993 18 C -0.195 4.195 19 C 0.165 3.835 20 O -0.329 6.329 21 C 0.016 3.984 22 C -0.290 4.290 23 C 0.163 3.837 24 O -0.332 6.332 25 C 0.016 3.984 26 C -0.183 4.183 27 H 0.063 0.937 28 H 0.045 0.955 29 H 0.136 0.864 30 H 0.129 0.871 31 H 0.119 0.881 32 H -0.002 1.002 33 H 0.000 1.000 34 H 0.263 0.737 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.164 0.836 42 H 0.119 0.881 43 H 0.068 0.932 44 H 0.066 0.934 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.973 -8.555 21.929 24.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.277 3.723 4 O -0.421 6.421 5 C -0.060 4.060 6 N -0.222 5.222 7 C 0.067 3.933 8 C -0.563 4.563 9 H 0.089 0.911 10 C -0.196 4.196 11 N -0.575 5.575 12 Si 0.792 3.208 13 H -0.199 1.199 14 H -0.211 1.211 15 H -0.184 1.184 16 C -0.048 4.048 17 C 0.006 3.994 18 C -0.215 4.215 19 C 0.119 3.881 20 O -0.242 6.242 21 C -0.078 4.078 22 C -0.310 4.310 23 C 0.117 3.883 24 O -0.246 6.246 25 C -0.078 4.078 26 C -0.202 4.202 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.154 0.846 30 H 0.146 0.854 31 H 0.137 0.863 32 H 0.016 0.984 33 H 0.018 0.982 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.181 0.819 42 H 0.137 0.863 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.105 -8.114 21.685 23.944 hybrid contribution -0.885 0.243 -0.907 1.290 sum 5.221 -7.870 20.778 22.823 Atomic orbital electron populations 1.23455 0.75758 1.05460 1.01820 1.86533 1.24507 1.33466 1.83798 1.25911 0.94199 0.81247 0.70907 1.90586 1.68024 1.37013 1.46435 1.22220 0.84111 0.93308 1.06343 1.62502 1.56611 1.00545 1.02526 1.19707 0.94306 0.93571 0.85739 1.21520 1.23969 1.19934 0.90898 0.91138 1.25920 0.95847 0.95707 1.02175 1.70127 1.34949 1.30079 1.22380 0.85402 0.79286 0.78006 0.78073 1.19876 1.21065 1.18388 1.21227 0.96489 0.98574 0.88550 1.19234 0.93523 0.93242 0.93413 1.20157 1.02149 1.02858 0.96290 1.18620 0.92098 0.88026 0.89328 1.86081 1.48853 1.52489 1.36820 1.23400 0.94628 1.02929 0.86879 1.21363 1.00529 1.03809 1.05274 1.18706 0.85651 0.90672 0.93279 1.86095 1.30371 1.59901 1.48229 1.23397 0.95445 1.02599 0.86354 1.20210 0.95431 1.05451 0.99141 0.91872 0.93590 0.84638 0.85352 0.86277 0.98406 0.98188 0.92873 0.91155 0.92170 0.86003 0.86069 0.91547 0.91506 0.81915 0.86250 0.91331 0.91527 0.86218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 10.56 113.37 1.20 1.97 16 2 O -0.37 -12.67 10.57 -51.45 -0.54 -13.22 16 3 C 0.43 17.56 7.14 71.24 0.51 18.07 16 4 O -0.53 -24.70 11.52 21.96 0.25 -24.45 16 5 C 0.07 2.74 5.63 85.56 0.48 3.22 16 6 N -0.50 -22.26 4.62 -909.98 -4.20 -26.46 16 7 C 0.19 10.60 4.40 85.56 0.38 10.98 16 8 C -0.52 -29.89 8.50 25.60 0.22 -29.67 16 9 H 0.07 3.83 7.10 -2.91 -0.02 3.81 16 10 C 0.00 0.08 5.46 84.66 0.46 0.55 16 11 N -0.93 -57.95 13.29 21.45 0.28 -57.66 16 12 Si 0.97 44.74 29.54 68.60 2.03 46.76 16 13 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 14 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 15 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 16 C 0.08 3.16 4.77 85.56 0.41 3.57 16 17 C 0.01 0.23 5.03 -19.89 -0.10 0.13 16 18 C -0.20 -5.95 8.46 22.38 0.19 -5.76 16 19 C 0.17 4.31 6.68 22.49 0.15 4.46 16 20 O -0.33 -7.38 10.50 -92.38 -0.97 -8.35 16 21 C 0.02 0.19 9.81 113.37 1.11 1.30 16 22 C -0.29 -6.70 8.02 22.46 0.18 -6.52 16 23 C 0.16 4.53 6.68 22.49 0.15 4.68 16 24 O -0.33 -8.31 10.50 -92.37 -0.97 -9.28 16 25 C 0.02 0.22 9.81 113.37 1.11 1.33 16 26 C -0.18 -6.06 9.66 22.38 0.22 -5.84 16 27 H 0.06 1.63 8.13 -2.39 -0.02 1.62 16 28 H 0.05 1.39 8.13 -2.39 -0.02 1.37 16 29 H 0.14 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.13 4.22 6.66 -2.39 -0.02 4.20 16 31 H 0.12 4.73 6.83 -2.39 -0.02 4.71 16 32 H 0.00 -0.11 5.47 -2.39 -0.01 -0.12 16 33 H 0.00 0.00 7.83 -2.39 -0.02 -0.02 16 34 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 35 H 0.07 2.94 7.70 -2.39 -0.02 2.93 16 36 H 0.06 2.50 5.29 -2.39 -0.01 2.49 16 37 H 0.12 3.71 8.06 -2.91 -0.02 3.68 16 38 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.07 0.65 7.66 -2.38 -0.02 0.64 16 40 H 0.07 0.63 7.66 -2.39 -0.02 0.62 16 41 H 0.16 2.52 4.54 -2.91 -0.01 2.51 16 42 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.07 0.72 7.66 -2.39 -0.02 0.70 16 44 H 0.07 0.74 7.66 -2.38 -0.02 0.73 16 45 H 0.12 4.21 8.06 -2.91 -0.02 4.19 16 Total: -1.00 -75.16 369.63 3.54 -71.61 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: 1.00 Total: 18.59 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: 6.66 Total: 2.46 kcal Atomic # 7 Polarization: -80.21 SS G_CDS: -3.92 Total: -84.13 kcal Atomic # 8 Polarization: -53.07 SS G_CDS: -2.23 Total: -55.30 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -75.16 3.54 -71.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065296068.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.643 kcal (2) G-P(sol) polarization free energy of solvation -75.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds