Wall clock time and date at job start Tue Mar 31 2020 14:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39759 * 125.83876 * 2 1 4 4 C 1.36109 * 107.82850 * 180.18847 * 3 2 1 5 5 N 1.39475 * 126.21949 * 179.85039 * 4 3 2 6 6 C 1.34774 * 119.99778 * 359.68497 * 5 4 3 7 7 O 1.21293 * 119.99939 * 0.02562 * 6 5 4 8 8 C 1.50701 * 120.00070 * 179.97438 * 6 5 4 9 9 O 1.42898 * 109.47299 * 179.97438 * 8 6 5 10 10 C 1.42896 * 114.00047 * 180.02562 * 9 8 6 11 11 C 1.53005 * 109.47091 * 180.02562 * 10 9 8 12 12 H 1.09002 * 110.33140 * 305.69926 * 11 10 9 13 13 C 1.54481 * 110.37412 * 183.45082 * 11 10 9 14 14 C 1.54503 * 104.06445 * 217.08080 * 13 11 10 15 15 C 1.54482 * 104.06349 * 359.97438 * 14 13 11 16 16 O 1.44428 * 110.46595 * 68.01282 * 11 10 9 17 17 N 1.35263 * 107.56729 * 359.58076 * 4 3 2 18 18 C 1.46499 * 126.04930 * 180.29534 * 17 4 3 19 19 C 1.50704 * 109.46908 * 90.00476 * 18 17 4 20 20 H 1.07996 * 119.99869 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99879 * 179.97438 * 19 18 17 22 22 N 1.31518 * 119.99903 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 120.00208 * 0.02562 * 21 19 18 24 24 H 1.48493 * 109.47252 * 89.99252 * 23 21 19 25 25 H 1.48500 * 109.47351 * 209.99718 * 23 21 19 26 26 H 1.48502 * 109.47026 * 329.99672 * 23 21 19 27 27 N 1.30848 * 125.84011 * 179.72504 * 2 1 3 28 28 H 1.08994 * 109.47077 * 270.30182 * 1 2 3 29 29 H 1.09007 * 109.46878 * 30.30057 * 1 2 3 30 30 H 1.08995 * 109.46992 * 150.29554 * 1 2 3 31 31 H 1.08001 * 126.08487 * 0.03719 * 3 2 1 32 32 H 0.96998 * 120.00042 * 179.68502 * 5 4 3 33 33 H 1.09007 * 109.46723 * 60.00555 * 8 6 5 34 34 H 1.08990 * 109.47379 * 300.00640 * 8 6 5 35 35 H 1.08997 * 109.47176 * 60.00349 * 10 9 8 36 36 H 1.09002 * 109.47048 * 299.99917 * 10 9 8 37 37 H 1.09007 * 110.50806 * 335.72406 * 13 11 10 38 38 H 1.08993 * 110.51288 * 98.42843 * 13 11 10 39 39 H 1.08994 * 110.51469 * 118.64075 * 14 13 11 40 40 H 1.09004 * 110.51074 * 241.35380 * 14 13 11 41 41 H 1.09000 * 110.37168 * 142.80761 * 15 14 13 42 42 H 1.08998 * 110.37438 * 265.04419 * 15 14 13 43 43 H 1.08996 * 109.47149 * 210.00529 * 18 17 4 44 44 H 1.08996 * 109.47262 * 330.00734 * 18 17 4 45 45 H 0.96993 * 120.00284 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6197 0.7121 -0.0043 5 7 4.7513 1.5274 -0.0086 6 6 4.6157 2.8683 -0.0153 7 8 3.5096 3.3660 -0.0171 8 6 5.8384 3.7493 -0.0195 9 8 5.4373 5.1208 -0.0270 10 6 6.5271 6.0451 -0.0320 11 6 5.9830 7.4751 -0.0392 12 1 5.2907 7.6127 -0.8698 13 6 7.1428 8.4913 -0.1319 14 6 6.6889 9.6622 0.7681 15 6 5.3082 9.2153 1.2976 16 8 5.3303 7.7733 1.2142 17 7 3.6093 -0.6404 0.0026 18 6 4.7870 -1.5116 0.0073 19 6 5.1905 -1.8032 1.4297 20 1 4.6257 -1.3821 2.2483 21 6 6.2799 -2.6085 1.6860 22 7 6.6317 -2.8634 2.9274 23 14 7.2562 -3.3375 0.2702 24 1 8.3478 -2.4054 -0.1101 25 1 7.8389 -4.6379 0.6884 26 1 6.3580 -3.5489 -0.8934 27 7 2.2731 -1.0607 0.0051 28 1 -0.3633 0.0054 1.0276 29 1 -0.3633 0.8873 -0.5185 30 1 -0.3633 -0.8926 -0.5092 31 1 1.9902 2.1597 0.0006 32 1 5.6359 1.1294 -0.0069 33 1 6.4337 3.5404 -0.9085 34 1 6.4335 3.5492 0.8715 35 1 7.1366 5.8834 -0.9211 36 1 7.1366 5.8930 0.8588 37 1 8.0658 8.0531 0.2481 38 1 7.2740 8.8284 -1.1600 39 1 7.3873 9.8030 1.5930 40 1 6.5955 10.5783 0.1848 41 1 5.1775 9.5330 2.3321 42 1 4.5126 9.6215 0.6731 43 1 4.5500 -2.4457 -0.5019 44 1 5.6085 -1.0148 -0.5088 45 1 7.3982 -3.4296 3.1078 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067173397.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:30 Heat of formation + Delta-G solvation = -42.808216 kcal Electronic energy + Delta-G solvation = -26834.074561 eV Core-core repulsion = 22853.990664 eV Total energy + Delta-G solvation = -3980.083897 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.91331 -39.84955 -39.25220 -37.43476 -34.76119 -33.74721 -32.50075 -32.16778 -31.25181 -29.67823 -28.99525 -27.29177 -26.30013 -25.37839 -22.59410 -22.30692 -21.63845 -21.25547 -19.78091 -19.34539 -17.37527 -17.23050 -17.07237 -16.81967 -16.33438 -16.11790 -15.77266 -15.63499 -14.96899 -14.76350 -14.36225 -14.08765 -14.03119 -13.79077 -13.25863 -13.00779 -12.70541 -12.65221 -12.48853 -12.25225 -12.15727 -11.99948 -11.87884 -11.80310 -11.61665 -11.54505 -11.14396 -11.01082 -10.84429 -10.47903 -10.23063 -10.02913 -9.93897 -9.91528 -9.76271 -9.47908 -8.87379 -7.94971 -7.47805 -6.34144 -4.38623 2.21965 2.45094 3.04759 3.05232 3.15575 3.16588 3.39297 3.56250 3.57270 3.83824 4.13119 4.19882 4.44582 4.53166 4.59976 4.79248 4.84960 4.91978 4.93098 4.99822 5.05014 5.11593 5.15784 5.31435 5.31548 5.41581 5.48531 5.58976 5.61213 5.65387 6.03700 6.04764 6.13965 6.22256 6.30980 6.37420 6.54140 6.64456 6.75263 6.84513 7.19510 7.45334 7.54618 7.78698 8.18077 8.31147 8.57839 8.72885 9.20338 10.78140 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012226 B = 0.002801 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.675495 B = 9993.819412 C =11696.533514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.055 3.945 3 C -0.292 4.292 4 C 0.307 3.693 5 N -0.640 5.640 6 C 0.520 3.480 7 O -0.490 6.490 8 C 0.051 3.949 9 O -0.354 6.354 10 C 0.066 3.934 11 C 0.077 3.923 12 H 0.079 0.921 13 C -0.149 4.149 14 C -0.155 4.155 15 C 0.041 3.959 16 O -0.359 6.359 17 N -0.344 5.344 18 C 0.230 3.770 19 C -0.545 4.545 20 H 0.082 0.918 21 C 0.080 3.920 22 N -0.883 5.883 23 Si 0.872 3.128 24 H -0.271 1.271 25 H -0.278 1.278 26 H -0.263 1.263 27 N -0.282 5.282 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.163 0.837 32 H 0.415 0.585 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.035 0.965 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.176 21.798 -8.492 23.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.110 4.110 3 C -0.323 4.323 4 C 0.085 3.915 5 N -0.289 5.289 6 C 0.305 3.695 7 O -0.361 6.361 8 C -0.029 4.029 9 O -0.272 6.272 10 C -0.011 4.011 11 C 0.019 3.981 12 H 0.097 0.903 13 C -0.186 4.186 14 C -0.193 4.193 15 C -0.036 4.036 16 O -0.278 6.278 17 N -0.130 5.130 18 C 0.111 3.889 19 C -0.584 4.584 20 H 0.100 0.900 21 C -0.125 4.125 22 N -0.520 5.520 23 Si 0.698 3.302 24 H -0.197 1.197 25 H -0.204 1.204 26 H -0.187 1.187 27 N -0.107 5.107 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.181 0.819 32 H 0.251 0.749 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.110 0.890 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.052 0.948 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.435 20.659 -8.209 22.363 hybrid contribution 1.758 0.138 -0.584 1.858 sum 4.193 20.797 -8.794 22.966 Atomic orbital electron populations 1.20036 0.87381 1.02378 1.02354 1.22059 0.96608 0.90945 1.01368 1.21310 0.89005 1.00593 1.21439 1.17854 0.87981 0.83016 1.02677 1.42604 1.08277 1.05339 1.72705 1.20122 0.91170 0.81222 0.77022 1.90674 1.26443 1.73402 1.45629 1.22079 0.94417 0.83158 1.03294 1.88047 1.30775 1.12925 1.95463 1.22641 0.89348 0.87791 1.01278 1.22983 0.93653 0.92915 0.88518 0.90290 1.22925 0.98977 0.95682 1.01065 1.22942 0.97889 0.98559 0.99889 1.23427 0.96164 0.81890 1.02120 1.89289 1.79856 1.20643 1.37978 1.48892 1.06219 1.01934 1.55907 1.19929 0.79279 0.90064 0.99662 1.21208 1.14216 1.32595 0.90341 0.90031 1.24830 0.96655 0.95228 0.95782 1.69873 1.26822 1.36728 1.18538 0.86917 0.80734 0.79753 0.82829 1.19689 1.20362 1.18740 1.77360 0.85740 1.21709 1.25922 0.91118 0.91032 0.91506 0.81923 0.74877 0.89805 0.89375 0.91531 0.91958 0.90276 0.90049 0.90501 0.90424 0.88993 0.92157 0.92722 0.94759 0.92023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.95 10.44 36.01 0.38 -0.57 16 2 C 0.06 1.13 7.21 -82.44 -0.59 0.53 16 3 C -0.29 -6.12 9.58 -39.78 -0.38 -6.50 16 4 C 0.31 6.50 7.66 -153.16 -1.17 5.32 16 5 N -0.64 -11.08 5.42 -11.46 -0.06 -11.14 16 6 C 0.52 8.52 7.87 -10.99 -0.09 8.43 16 7 O -0.49 -9.77 13.63 -14.36 -0.20 -9.97 16 8 C 0.05 0.60 6.42 36.01 0.23 0.83 16 9 O -0.35 -4.80 9.88 -57.42 -0.57 -5.37 16 10 C 0.07 0.63 5.55 37.16 0.21 0.83 16 11 C 0.08 0.73 3.57 -25.95 -0.09 0.63 16 12 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 13 C -0.15 -0.92 6.63 -25.17 -0.17 -1.08 16 14 C -0.16 -0.91 7.09 -25.16 -0.18 -1.09 16 15 C 0.04 0.33 7.63 37.94 0.29 0.62 16 16 O -0.36 -4.35 11.35 -35.55 -0.40 -4.76 16 17 N -0.34 -7.98 3.60 -61.57 -0.22 -8.20 16 18 C 0.23 5.38 5.08 -5.19 -0.03 5.35 16 19 C -0.55 -14.90 9.94 -34.44 -0.34 -15.24 16 20 H 0.08 2.56 8.06 -52.49 -0.42 2.14 16 21 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 22 N -0.88 -25.65 13.96 55.43 0.77 -24.88 16 23 Si 0.87 19.37 27.47 -169.99 -4.67 14.70 16 24 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 26 H -0.26 -5.63 6.54 56.52 0.37 -5.26 16 27 N -0.28 -6.57 12.56 33.65 0.42 -6.15 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.07 0.93 8.14 -51.92 -0.42 0.50 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.16 3.38 5.83 -52.49 -0.31 3.07 16 32 H 0.41 6.24 7.96 -40.82 -0.33 5.91 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.43 7.87 -51.93 -0.41 0.03 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.05 1.30 7.20 -51.93 -0.37 0.93 16 44 H 0.03 0.71 6.93 -51.93 -0.36 0.35 16 45 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 376.75 15.07 5.68 5.68 Total: -1.00 -35.99 376.75 -8.14 -44.13 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -6.86 Total: 5.84 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -2.04 Total: 0.13 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: 0.91 Total: -50.38 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -1.17 Total: -20.09 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -4.67 Total: 14.70 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.99 -8.14 -44.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067173397.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.319 kcal (2) G-P(sol) polarization free energy of solvation -35.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds