Wall clock time and date at job start Tue Mar 31 2020 14:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39753 * 125.84042 * 2 1 4 4 C 1.36116 * 107.82697 * 179.97438 * 3 2 1 5 5 N 1.39472 * 126.21453 * 180.02562 * 4 3 2 6 6 C 1.34780 * 119.99951 * 0.02562 * 5 4 3 7 7 O 1.21290 * 119.99895 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.99850 * 179.97438 * 6 5 4 9 9 O 1.42895 * 109.47159 * 180.02562 * 8 6 5 10 10 C 1.42901 * 114.00352 * 180.02562 * 9 8 6 11 11 C 1.52998 * 109.47412 * 180.02562 * 10 9 8 12 12 H 1.08998 * 110.67785 * 52.02979 * 11 10 9 13 13 C 1.54991 * 110.61844 * 175.00149 * 11 10 9 14 14 C 1.54817 * 102.09285 * 155.52077 * 13 11 10 15 15 C 1.54096 * 104.18822 * 339.11830 * 14 13 11 16 16 O 1.43749 * 107.29556 * 357.96748 * 15 14 13 17 17 N 1.35259 * 107.56656 * 0.26490 * 4 3 2 18 18 C 1.46499 * 126.04523 * 179.74358 * 17 4 3 19 19 C 1.50697 * 109.47662 * 89.99415 * 18 17 4 20 20 H 1.07997 * 119.99681 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00355 * 179.97438 * 19 18 17 22 22 N 1.31521 * 119.99775 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 120.00319 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46652 * 60.00313 * 23 21 19 25 25 H 1.48497 * 109.47066 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.46944 * 300.00331 * 23 21 19 27 27 N 1.30857 * 125.83334 * 179.97438 * 2 1 3 28 28 H 1.08995 * 109.47011 * 89.99935 * 1 2 3 29 29 H 1.09004 * 109.46972 * 209.99992 * 1 2 3 30 30 H 1.09004 * 109.46641 * 329.99609 * 1 2 3 31 31 H 1.07994 * 126.08388 * 0.02562 * 3 2 1 32 32 H 0.97001 * 119.99959 * 180.02562 * 5 4 3 33 33 H 1.09000 * 109.46791 * 60.00093 * 8 6 5 34 34 H 1.09001 * 109.47193 * 300.00122 * 8 6 5 35 35 H 1.08996 * 109.47237 * 59.99493 * 10 9 8 36 36 H 1.09004 * 109.46663 * 299.99724 * 10 9 8 37 37 H 1.08996 * 110.90945 * 37.32016 * 13 11 10 38 38 H 1.09004 * 110.90588 * 273.71282 * 13 11 10 39 39 H 1.09004 * 110.48829 * 97.79579 * 14 13 11 40 40 H 1.09002 * 110.48570 * 220.30390 * 14 13 11 41 41 H 1.08997 * 109.88493 * 117.39400 * 15 14 13 42 42 H 1.09004 * 109.87903 * 238.55227 * 15 14 13 43 43 H 1.09007 * 109.46847 * 209.99851 * 18 17 4 44 44 H 1.09005 * 109.46962 * 329.99154 * 18 17 4 45 45 H 0.97001 * 119.99357 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1329 0.0000 4 6 3.6198 0.7120 0.0006 5 7 4.7514 1.5273 0.0013 6 6 4.6158 2.8683 0.0020 7 8 3.5097 3.3660 0.0024 8 6 5.8385 3.7492 0.0033 9 8 5.4375 5.1207 0.0044 10 6 6.5273 6.0450 0.0051 11 6 5.9833 7.4750 0.0069 12 1 5.2602 7.6107 0.8112 13 6 7.1399 8.4988 0.1342 14 6 6.5226 9.7666 -0.5049 15 6 5.3725 9.2279 -1.3777 16 8 5.3895 7.7946 -1.2698 17 7 3.6092 -0.6405 -0.0050 18 6 4.7870 -1.5118 -0.0118 19 6 5.1948 -1.8164 1.4066 20 1 4.6327 -1.4027 2.2307 21 6 6.2849 -2.6240 1.6522 22 7 6.9692 -3.1281 0.6485 23 14 6.7909 -3.0010 3.4104 24 1 5.6737 -3.6834 4.1114 25 1 7.9839 -3.8852 3.4034 26 1 7.1168 -1.7345 4.1140 27 7 2.2731 -1.0609 0.0005 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 1.9902 2.1596 0.0004 32 1 5.6359 1.1292 0.0013 33 1 6.4342 3.5451 -0.8864 34 1 6.4331 3.5441 0.8936 35 1 7.1368 5.8888 -0.8849 36 1 7.1367 5.8874 0.8951 37 1 8.0153 8.1683 -0.4248 38 1 7.3913 8.6736 1.1803 39 1 6.1363 10.4332 0.2663 40 1 7.2609 10.2825 -1.1188 41 1 4.4200 9.6155 -1.0164 42 1 5.5254 9.5232 -2.4158 43 1 4.5484 -2.4412 -0.5289 44 1 5.6070 -1.0102 -0.5259 45 1 7.7360 -3.6966 0.8213 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067173399.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:33 Heat of formation + Delta-G solvation = -49.335953 kcal Electronic energy + Delta-G solvation = -26773.766517 eV Core-core repulsion = 22793.399556 eV Total energy + Delta-G solvation = -3980.366961 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.82989 -39.83934 -39.20691 -37.42043 -34.68952 -33.74719 -32.51170 -32.06415 -31.26089 -29.43852 -28.79386 -27.24723 -26.02048 -25.40377 -22.89681 -22.04637 -21.72837 -21.37666 -19.72623 -19.27346 -17.40870 -17.09577 -16.86872 -16.71436 -16.23089 -16.19565 -15.73942 -15.48029 -14.98171 -14.69373 -14.42063 -14.08186 -13.88329 -13.81994 -13.23572 -12.82208 -12.76699 -12.51390 -12.46392 -12.16339 -12.04369 -11.98852 -11.74750 -11.65610 -11.55271 -11.50078 -11.09830 -11.06616 -10.87952 -10.37906 -10.32415 -9.93332 -9.91885 -9.84894 -9.82841 -9.42277 -8.72703 -7.89826 -7.41355 -6.34145 -4.42682 2.27929 2.51425 3.10982 3.17013 3.21873 3.26632 3.46145 3.52591 3.62983 3.91117 4.15897 4.23678 4.46354 4.53675 4.64210 4.79002 4.87576 4.92796 4.99060 5.00634 5.07097 5.12878 5.16650 5.31396 5.39386 5.40041 5.48521 5.58044 5.66770 5.69099 6.06505 6.18686 6.21486 6.27946 6.44898 6.60458 6.68089 6.83760 6.86793 7.05630 7.53550 7.58296 7.64482 7.79521 7.94632 8.32996 8.62491 8.72052 9.24850 10.72889 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012181 B = 0.002740 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.092350 B =10215.633371 C =12029.527779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.051 3.949 3 C -0.295 4.295 4 C 0.303 3.697 5 N -0.639 5.639 6 C 0.519 3.481 7 O -0.492 6.492 8 C 0.051 3.949 9 O -0.355 6.355 10 C 0.067 3.933 11 C 0.079 3.921 12 H 0.081 0.919 13 C -0.148 4.148 14 C -0.156 4.156 15 C 0.044 3.956 16 O -0.364 6.364 17 N -0.345 5.345 18 C 0.257 3.743 19 C -0.540 4.540 20 H 0.064 0.936 21 C 0.067 3.933 22 N -0.891 5.891 23 Si 0.907 3.093 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.275 1.275 27 N -0.285 5.285 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.161 0.839 32 H 0.416 0.584 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.059 0.941 42 H 0.083 0.917 43 H 0.057 0.943 44 H 0.044 0.956 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.717 22.152 -2.069 22.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.114 4.114 3 C -0.327 4.327 4 C 0.081 3.919 5 N -0.288 5.288 6 C 0.304 3.696 7 O -0.364 6.364 8 C -0.029 4.029 9 O -0.273 6.273 10 C -0.010 4.010 11 C 0.022 3.978 12 H 0.099 0.901 13 C -0.186 4.186 14 C -0.193 4.193 15 C -0.033 4.033 16 O -0.283 6.283 17 N -0.130 5.130 18 C 0.139 3.861 19 C -0.579 4.579 20 H 0.083 0.917 21 C -0.137 4.137 22 N -0.528 5.528 23 Si 0.733 3.267 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.200 1.200 27 N -0.111 5.111 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.179 0.821 32 H 0.253 0.747 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.077 0.923 42 H 0.102 0.898 43 H 0.075 0.925 44 H 0.062 0.938 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.009 20.998 -2.286 21.218 hybrid contribution 1.459 0.349 1.104 1.863 sum 3.468 21.347 -1.182 21.659 Atomic orbital electron populations 1.20021 0.87572 1.02437 1.02053 1.22034 0.96529 0.91024 1.01811 1.21293 0.89092 1.00503 1.21798 1.17869 0.87870 0.83294 1.02861 1.42608 1.08414 1.05256 1.72551 1.20113 0.91115 0.81295 0.77094 1.90670 1.26447 1.73462 1.45792 1.22079 0.94482 0.83075 1.03290 1.88043 1.30786 1.12994 1.95475 1.22591 0.89361 0.87724 1.01336 1.23130 0.94168 0.92818 0.87725 0.90071 1.23111 0.98539 0.94689 1.02259 1.22933 0.98476 0.98077 0.99840 1.23159 0.97805 0.81760 1.00598 1.89013 1.82717 1.20664 1.35924 1.49347 1.06550 1.02105 1.55035 1.19615 0.77853 0.89778 0.98876 1.21313 1.13260 1.31922 0.91390 0.91747 1.24938 0.95719 0.94891 0.98151 1.69914 1.19256 1.32660 1.30986 0.86406 0.78101 0.78501 0.83649 1.19860 1.20916 1.19988 1.77358 0.86100 1.21759 1.25833 0.91358 0.91515 0.91119 0.82120 0.74710 0.89647 0.89567 0.91984 0.91405 0.90106 0.89722 0.90522 0.90320 0.92255 0.89837 0.92528 0.93804 0.92114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.96 10.44 36.01 0.38 -0.58 16 2 C 0.05 1.05 7.21 -82.44 -0.59 0.46 16 3 C -0.29 -6.29 9.58 -39.78 -0.38 -6.67 16 4 C 0.30 6.56 7.66 -153.16 -1.17 5.38 16 5 N -0.64 -11.33 5.42 -11.46 -0.06 -11.39 16 6 C 0.52 8.64 7.87 -10.98 -0.09 8.55 16 7 O -0.49 -9.93 13.63 -14.36 -0.20 -10.12 16 8 C 0.05 0.61 6.42 36.00 0.23 0.84 16 9 O -0.36 -4.85 9.88 -56.11 -0.55 -5.41 16 10 C 0.07 0.64 5.68 37.16 0.21 0.85 16 11 C 0.08 0.75 3.63 -25.68 -0.09 0.66 16 12 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 13 C -0.15 -0.92 6.59 -24.72 -0.16 -1.08 16 14 C -0.16 -0.89 7.01 -25.20 -0.18 -1.07 16 15 C 0.04 0.35 7.70 37.73 0.29 0.64 16 16 O -0.36 -4.33 11.22 -35.23 -0.40 -4.73 16 17 N -0.34 -8.20 3.60 -61.57 -0.22 -8.42 16 18 C 0.26 6.42 6.00 -5.20 -0.03 6.39 16 19 C -0.54 -14.48 9.39 -34.44 -0.32 -14.80 16 20 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 21 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 22 N -0.89 -24.19 13.29 55.43 0.74 -23.46 16 23 Si 0.91 20.55 29.54 -169.99 -5.02 15.53 16 24 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 27 N -0.29 -6.77 12.57 33.65 0.42 -6.35 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.16 3.39 5.83 -52.49 -0.31 3.09 16 32 H 0.42 6.57 7.97 -40.82 -0.33 6.24 16 33 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.45 8.06 -51.93 -0.42 0.03 16 38 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 1.53 8.14 -51.92 -0.42 1.10 16 44 H 0.04 1.05 7.50 -51.93 -0.39 0.66 16 45 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 380.56 15.07 5.73 5.73 Total: -1.00 -34.34 380.56 -8.47 -42.81 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -6.90 Total: 4.57 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -2.01 Total: 1.23 kcal Atomic # 7 Polarization: -50.49 SS G_CDS: 0.88 Total: -49.61 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -1.15 Total: -20.26 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.34 -8.47 -42.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067173399.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.521 kcal (2) G-P(sol) polarization free energy of solvation -34.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds