Wall clock time and date at job start Tue Mar 31 2020 14:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39753 * 125.84042 * 2 1 4 4 C 1.36116 * 107.82697 * 179.97438 * 3 2 1 5 5 N 1.39472 * 126.21453 * 180.02562 * 4 3 2 6 6 C 1.34780 * 119.99951 * 0.02562 * 5 4 3 7 7 O 1.21290 * 119.99895 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.99850 * 179.97438 * 6 5 4 9 9 O 1.42895 * 109.47159 * 180.02562 * 8 6 5 10 10 C 1.42901 * 114.00352 * 180.02562 * 9 8 6 11 11 C 1.52998 * 109.47412 * 180.02562 * 10 9 8 12 12 H 1.08998 * 110.67785 * 52.02979 * 11 10 9 13 13 C 1.54991 * 110.61844 * 175.00149 * 11 10 9 14 14 C 1.54817 * 102.09285 * 155.52077 * 13 11 10 15 15 C 1.54096 * 104.18822 * 339.11830 * 14 13 11 16 16 O 1.43749 * 107.29556 * 357.96748 * 15 14 13 17 17 N 1.35259 * 107.56656 * 0.26490 * 4 3 2 18 18 C 1.46499 * 126.04523 * 179.74358 * 17 4 3 19 19 C 1.50697 * 109.47662 * 89.99415 * 18 17 4 20 20 H 1.07997 * 119.99681 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00355 * 179.97438 * 19 18 17 22 22 N 1.31521 * 119.99775 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 120.00319 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46652 * 60.00313 * 23 21 19 25 25 H 1.48497 * 109.47066 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.46944 * 300.00331 * 23 21 19 27 27 N 1.30857 * 125.83334 * 179.97438 * 2 1 3 28 28 H 1.08995 * 109.47011 * 89.99935 * 1 2 3 29 29 H 1.09004 * 109.46972 * 209.99992 * 1 2 3 30 30 H 1.09004 * 109.46641 * 329.99609 * 1 2 3 31 31 H 1.07994 * 126.08388 * 0.02562 * 3 2 1 32 32 H 0.97001 * 119.99959 * 180.02562 * 5 4 3 33 33 H 1.09000 * 109.46791 * 60.00093 * 8 6 5 34 34 H 1.09001 * 109.47193 * 300.00122 * 8 6 5 35 35 H 1.08996 * 109.47237 * 59.99493 * 10 9 8 36 36 H 1.09004 * 109.46663 * 299.99724 * 10 9 8 37 37 H 1.08996 * 110.90945 * 37.32016 * 13 11 10 38 38 H 1.09004 * 110.90588 * 273.71282 * 13 11 10 39 39 H 1.09004 * 110.48829 * 97.79579 * 14 13 11 40 40 H 1.09002 * 110.48570 * 220.30390 * 14 13 11 41 41 H 1.08997 * 109.88493 * 117.39400 * 15 14 13 42 42 H 1.09004 * 109.87903 * 238.55227 * 15 14 13 43 43 H 1.09007 * 109.46847 * 209.99851 * 18 17 4 44 44 H 1.09005 * 109.46962 * 329.99154 * 18 17 4 45 45 H 0.97001 * 119.99357 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1329 0.0000 4 6 3.6198 0.7120 0.0006 5 7 4.7514 1.5273 0.0013 6 6 4.6158 2.8683 0.0020 7 8 3.5097 3.3660 0.0024 8 6 5.8385 3.7492 0.0033 9 8 5.4375 5.1207 0.0044 10 6 6.5273 6.0450 0.0051 11 6 5.9833 7.4750 0.0069 12 1 5.2602 7.6107 0.8112 13 6 7.1399 8.4988 0.1342 14 6 6.5226 9.7666 -0.5049 15 6 5.3725 9.2279 -1.3777 16 8 5.3895 7.7946 -1.2698 17 7 3.6092 -0.6405 -0.0050 18 6 4.7870 -1.5118 -0.0118 19 6 5.1948 -1.8164 1.4066 20 1 4.6327 -1.4027 2.2307 21 6 6.2849 -2.6240 1.6522 22 7 6.9692 -3.1281 0.6485 23 14 6.7909 -3.0010 3.4104 24 1 5.6737 -3.6834 4.1114 25 1 7.9839 -3.8852 3.4034 26 1 7.1168 -1.7345 4.1140 27 7 2.2731 -1.0609 0.0005 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 1.9902 2.1596 0.0004 32 1 5.6359 1.1292 0.0013 33 1 6.4342 3.5451 -0.8864 34 1 6.4331 3.5441 0.8936 35 1 7.1368 5.8888 -0.8849 36 1 7.1367 5.8874 0.8951 37 1 8.0153 8.1683 -0.4248 38 1 7.3913 8.6736 1.1803 39 1 6.1363 10.4332 0.2663 40 1 7.2609 10.2825 -1.1188 41 1 4.4200 9.6155 -1.0164 42 1 5.5254 9.5232 -2.4158 43 1 4.5484 -2.4412 -0.5289 44 1 5.6070 -1.0102 -0.5259 45 1 7.7360 -3.6966 0.8213 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067173399.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:33 Heat of formation + Delta-G solvation = -72.214457 kcal Electronic energy + Delta-G solvation = -26774.758603 eV Core-core repulsion = 22793.399556 eV Total energy + Delta-G solvation = -3981.359047 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.44001 -40.77309 -40.33662 -38.39169 -36.28210 -35.59758 -33.84631 -33.12455 -32.00431 -30.92606 -30.27682 -28.48320 -27.80657 -26.12035 -24.76502 -23.00909 -22.65058 -22.13103 -21.30014 -20.78911 -18.89843 -18.46656 -18.27737 -17.83750 -17.28389 -17.12130 -16.73019 -16.62155 -16.34746 -16.17987 -15.83088 -15.43510 -15.17082 -14.61627 -14.47054 -14.43013 -14.05842 -13.97551 -13.63312 -13.39105 -13.23408 -13.12273 -12.90685 -12.79310 -12.69690 -12.64546 -12.28177 -12.22130 -12.13149 -11.95698 -11.70619 -11.53752 -11.45705 -10.89649 -10.75720 -10.75344 -10.63201 -9.64824 -9.09177 -8.36026 -6.53586 0.76020 1.17661 1.37304 1.40074 1.48304 1.59856 2.02149 2.04258 2.33968 2.78350 2.91926 2.94439 3.45457 3.65629 3.81829 3.92120 4.01607 4.11730 4.15048 4.21945 4.23538 4.28581 4.42332 4.54359 4.57518 4.61270 4.70669 4.82816 4.83726 4.86638 4.88732 4.91545 4.94793 4.94910 5.07660 5.20282 5.21655 5.22803 5.51189 5.77014 5.92293 5.94698 6.03684 6.13292 6.30932 6.57225 6.93800 7.01618 7.18435 8.70283 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012181 B = 0.002740 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.092350 B =10215.633371 C =12029.527779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.058 3.942 3 C -0.310 4.310 4 C 0.301 3.699 5 N -0.635 5.635 6 C 0.516 3.484 7 O -0.531 6.531 8 C 0.059 3.941 9 O -0.392 6.392 10 C 0.061 3.939 11 C 0.068 3.932 12 H 0.068 0.932 13 C -0.139 4.139 14 C -0.150 4.150 15 C 0.033 3.967 16 O -0.403 6.403 17 N -0.365 5.365 18 C 0.271 3.729 19 C -0.556 4.556 20 H 0.047 0.953 21 C 0.029 3.971 22 N -0.914 5.914 23 Si 0.969 3.031 24 H -0.280 1.280 25 H -0.272 1.272 26 H -0.263 1.263 27 N -0.329 5.329 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.163 0.837 32 H 0.425 0.575 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.071 0.929 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.056 0.944 42 H 0.090 0.910 43 H 0.027 0.973 44 H 0.051 0.949 45 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.242 23.622 -1.094 24.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.107 4.107 3 C -0.342 4.342 4 C 0.079 3.921 5 N -0.285 5.285 6 C 0.304 3.696 7 O -0.405 6.405 8 C -0.021 4.021 9 O -0.311 6.311 10 C -0.014 4.014 11 C 0.011 3.989 12 H 0.086 0.914 13 C -0.177 4.177 14 C -0.188 4.188 15 C -0.043 4.043 16 O -0.323 6.323 17 N -0.151 5.151 18 C 0.153 3.847 19 C -0.594 4.594 20 H 0.065 0.935 21 C -0.173 4.173 22 N -0.551 5.551 23 Si 0.793 3.207 24 H -0.206 1.206 25 H -0.197 1.197 26 H -0.188 1.188 27 N -0.154 5.154 28 H 0.108 0.892 29 H 0.093 0.907 30 H 0.110 0.890 31 H 0.181 0.819 32 H 0.263 0.737 33 H 0.134 0.866 34 H 0.137 0.863 35 H 0.089 0.911 36 H 0.115 0.885 37 H 0.108 0.892 38 H 0.121 0.879 39 H 0.106 0.894 40 H 0.112 0.888 41 H 0.075 0.925 42 H 0.108 0.892 43 H 0.045 0.955 44 H 0.069 0.931 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.562 22.492 -1.320 22.811 hybrid contribution 0.912 -0.028 0.744 1.178 sum 4.474 22.464 -0.576 22.912 Atomic orbital electron populations 1.20225 0.83913 1.03883 1.03884 1.22878 0.98764 0.89993 0.99024 1.21469 0.89340 1.00720 1.22692 1.18250 0.89436 0.82881 1.01562 1.42776 1.07781 1.05526 1.72391 1.21146 0.92323 0.80892 0.75227 1.90640 1.28492 1.73903 1.47481 1.22170 0.91888 0.81787 1.06206 1.87999 1.33338 1.13885 1.95860 1.22868 0.88666 0.86776 1.03121 1.23321 0.95164 0.93860 0.86542 0.91383 1.23108 0.97427 0.93537 1.03623 1.22941 0.97853 0.98113 0.99895 1.23356 0.98879 0.80376 1.01700 1.88968 1.83362 1.22788 1.37156 1.49186 1.06363 1.02728 1.56811 1.19263 0.78583 0.89007 0.97891 1.21368 1.13710 1.32781 0.91584 0.93482 1.25674 0.95375 0.94275 1.02013 1.69987 1.19543 1.32787 1.32813 0.85448 0.77687 0.78755 0.78855 1.20566 1.19676 1.18752 1.77308 0.86432 1.23449 1.28230 0.89208 0.90720 0.88971 0.81942 0.73677 0.86639 0.86296 0.91075 0.88505 0.89214 0.87881 0.89428 0.88802 0.92520 0.89167 0.95480 0.93087 0.91599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.79 10.44 71.24 0.74 -1.05 16 2 C 0.06 2.44 7.21 43.07 0.31 2.75 16 3 C -0.31 -13.38 9.58 22.14 0.21 -13.17 16 4 C 0.30 13.23 7.66 131.32 1.01 14.24 16 5 N -0.63 -22.40 5.42 -308.56 -1.67 -24.07 16 6 C 0.52 16.93 7.87 87.66 0.69 17.62 16 7 O -0.53 -21.64 13.63 15.97 0.22 -21.42 16 8 C 0.06 1.28 6.42 71.24 0.46 1.74 16 9 O -0.39 -10.25 9.88 -129.02 -1.27 -11.52 16 10 C 0.06 1.05 5.68 71.98 0.41 1.46 16 11 C 0.07 1.23 3.63 31.27 0.11 1.34 16 12 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 13 C -0.14 -1.39 6.59 31.90 0.21 -1.18 16 14 C -0.15 -1.42 7.01 31.59 0.22 -1.20 16 15 C 0.03 0.52 7.70 72.35 0.56 1.07 16 16 O -0.40 -9.54 11.22 -148.98 -1.67 -11.22 16 17 N -0.37 -17.83 3.60 -348.70 -1.26 -19.09 16 18 C 0.27 13.97 6.00 85.63 0.51 14.48 16 19 C -0.56 -30.25 9.39 25.60 0.24 -30.01 16 20 H 0.05 2.68 7.81 -2.91 -0.02 2.66 16 21 C 0.03 1.50 5.46 84.65 0.46 1.96 16 22 N -0.91 -49.49 13.29 21.45 0.28 -49.21 16 23 Si 0.97 41.57 29.54 68.60 2.03 43.60 16 24 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 25 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 26 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 27 N -0.33 -15.99 12.57 -47.44 -0.60 -16.58 16 28 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.09 2.32 8.14 -2.38 -0.02 2.30 16 31 H 0.16 6.95 5.83 -2.91 -0.02 6.94 16 32 H 0.42 13.20 7.97 -92.71 -0.74 12.46 16 33 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 37 H 0.09 0.74 8.06 -2.39 -0.02 0.72 16 38 H 0.10 0.65 8.14 -2.38 -0.02 0.63 16 39 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.03 1.53 8.14 -2.38 -0.02 1.51 16 44 H 0.05 2.50 7.50 -2.38 -0.02 2.48 16 45 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 Total: -1.00 -76.47 380.56 2.47 -74.00 By element: Atomic # 1 Polarization: 25.20 SS G_CDS: 0.26 Total: 25.46 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: 6.15 Total: 10.06 kcal Atomic # 7 Polarization: -105.72 SS G_CDS: -3.24 Total: -108.95 kcal Atomic # 8 Polarization: -41.44 SS G_CDS: -2.73 Total: -44.16 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Total: -76.47 2.47 -74.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067173399.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.786 kcal (2) G-P(sol) polarization free energy of solvation -76.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds