Wall clock time and date at job start Tue Mar 31 2020 14:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 113.99661 * 2 1 4 4 C 1.53006 * 109.47408 * 179.97438 * 3 2 1 5 5 O 1.42902 * 109.47055 * 64.99415 * 4 3 2 6 6 C 1.42895 * 113.99818 * 180.02562 * 5 4 3 7 7 C 1.53008 * 109.46909 * 179.97438 * 6 5 4 8 8 C 1.50705 * 109.47199 * 179.97438 * 7 6 5 9 9 O 1.21279 * 119.99653 * 0.02562 * 8 7 6 10 10 N 1.34769 * 119.99900 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99695 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.46837 * 180.02562 * 11 10 8 13 13 C 1.38305 * 119.93408 * 89.99748 * 12 11 10 14 14 C 1.38101 * 120.07071 * 179.97438 * 13 12 11 15 15 C 1.38876 * 119.92956 * 0.02562 * 14 13 12 16 16 O 1.35750 * 120.06861 * 180.02562 * 15 14 13 17 17 C 1.34828 * 117.00075 * 5.53840 * 16 15 14 18 18 H 1.08003 * 120.00029 * 354.94359 * 17 16 15 19 19 C 1.38659 * 120.00122 * 174.94542 * 17 16 15 20 20 N 1.31558 * 119.99705 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 120.00035 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47181 * 89.99980 * 21 19 17 23 23 H 1.48498 * 109.47260 * 210.00361 * 21 19 17 24 24 H 1.48502 * 109.47130 * 330.00179 * 21 19 17 25 25 C 1.38880 * 119.86555 * 0.27954 * 15 14 13 26 26 C 1.38102 * 119.92551 * 359.44514 * 25 15 14 27 27 H 1.09000 * 109.47094 * 300.00074 * 1 2 3 28 28 H 1.08991 * 109.47311 * 60.00693 * 1 2 3 29 29 H 1.08999 * 109.46647 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47576 * 60.00038 * 3 2 1 31 31 H 1.09005 * 109.47195 * 299.99402 * 3 2 1 32 32 H 1.09003 * 109.46899 * 304.99956 * 4 3 2 33 33 H 1.08991 * 109.47590 * 184.99715 * 4 3 2 34 34 H 1.08997 * 109.47523 * 60.00351 * 6 5 4 35 35 H 1.08996 * 109.47387 * 299.99716 * 6 5 4 36 36 H 1.09003 * 109.47040 * 60.00072 * 7 6 5 37 37 H 1.08996 * 109.46932 * 300.00077 * 7 6 5 38 38 H 0.96998 * 120.00328 * 0.02562 * 10 8 7 39 39 H 1.08986 * 109.47314 * 59.99652 * 11 10 8 40 40 H 1.09005 * 109.46923 * 299.99397 * 11 10 8 41 41 H 1.07999 * 119.96326 * 0.02562 * 13 12 11 42 42 H 1.07997 * 120.03156 * 180.02562 * 14 13 12 43 43 H 0.96997 * 119.99350 * 179.97438 * 20 19 17 44 44 H 1.07996 * 120.04097 * 179.72435 * 25 15 14 45 45 H 1.07997 * 119.96688 * 180.27743 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 8 3.9659 0.5793 -1.2201 6 6 5.3822 0.4189 -1.3215 7 6 5.7267 -0.2360 -2.6607 8 6 7.2204 -0.4046 -2.7680 9 8 7.9386 -0.0376 -1.8622 10 7 7.7580 -0.9632 -3.8703 11 6 9.2101 -1.1276 -3.9743 12 6 9.5495 -1.7713 -5.2940 13 6 9.7912 -0.9831 -6.4044 14 6 10.1030 -1.5700 -7.6150 15 6 10.1731 -2.9532 -7.7168 16 8 10.4798 -3.5331 -8.9053 17 6 10.8174 -2.7104 -9.9187 18 1 10.7561 -1.6400 -9.7886 19 6 11.2433 -3.2386 -11.1280 20 7 11.5731 -2.4358 -12.1166 21 14 11.3499 -5.0899 -11.3528 22 1 10.0550 -5.6012 -11.8693 23 1 12.4299 -5.4096 -12.3206 24 1 11.6498 -5.7306 -10.0471 25 6 9.9236 -3.7422 -6.6015 26 6 9.6179 -3.1491 -5.3923 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 1.6885 1.8464 0.8900 31 1 1.6886 1.8464 -0.8901 32 1 3.8508 0.5687 0.8427 33 1 3.9784 2.1766 0.0902 34 1 5.7355 -0.2133 -0.5069 35 1 5.8637 1.3947 -1.2593 36 1 5.3733 0.3959 -3.4757 37 1 5.2451 -1.2118 -2.7225 38 1 7.1836 -1.2563 -4.5949 39 1 9.5634 -1.7596 -3.1598 40 1 9.6916 -0.1516 -3.9121 41 1 9.7370 0.0926 -6.3245 42 1 10.2920 -0.9538 -8.4816 43 1 11.8714 -2.8053 -12.9624 44 1 9.9729 -4.8183 -6.6785 45 1 9.4282 -3.7619 -4.5236 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067925898.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:59 Heat of formation + Delta-G solvation = -136.350237 kcal Electronic energy + Delta-G solvation = -25328.474380 eV Core-core repulsion = 21312.041445 eV Total energy + Delta-G solvation = -4016.432935 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.93927 -39.24503 -38.72038 -37.52353 -37.02878 -34.51286 -32.54615 -32.37844 -30.52643 -30.35293 -29.63021 -26.68828 -26.20212 -24.83922 -23.32341 -22.93842 -22.20139 -20.64361 -20.33607 -18.01525 -17.78415 -17.39515 -17.22737 -16.62808 -16.23320 -16.17541 -15.61880 -15.48718 -15.27543 -14.83516 -14.50800 -14.18543 -13.95314 -13.89080 -13.68851 -13.48555 -13.30581 -12.88069 -12.74986 -12.61250 -12.28316 -12.10564 -12.01733 -11.75796 -11.53229 -11.47520 -11.34818 -10.98154 -10.88128 -10.77926 -10.23162 -10.11995 -9.98356 -9.90690 -9.49989 -9.05376 -8.96374 -8.39944 -7.49876 -6.51087 -4.18149 1.92322 2.00820 2.56770 2.95182 3.17047 3.19738 3.33854 3.34822 3.67646 4.15724 4.39130 4.54319 4.63069 4.72112 4.72898 4.79490 4.83501 4.91827 4.94883 5.01521 5.05756 5.10009 5.16777 5.26984 5.29447 5.31908 5.33552 5.53517 5.55812 5.59292 5.70610 5.84441 6.01363 6.22726 6.40870 6.45226 6.65920 6.69659 6.87617 6.88601 7.10435 7.16828 7.47388 7.50723 7.69276 7.92931 8.15738 8.83376 9.43826 10.56009 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.022029 B = 0.001656 C = 0.001606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.740485 B =16899.974882 C =17434.292890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.062 3.938 4 C 0.065 3.935 5 O -0.384 6.384 6 C 0.079 3.921 7 C -0.140 4.140 8 C 0.515 3.485 9 O -0.551 6.551 10 N -0.720 5.720 11 C 0.177 3.823 12 C -0.207 4.207 13 C -0.052 4.052 14 C -0.224 4.224 15 C 0.167 3.833 16 O -0.213 6.213 17 C -0.392 4.392 18 H 0.108 0.892 19 C 0.065 3.935 20 N -0.875 5.875 21 Si 0.906 3.094 22 H -0.273 1.273 23 H -0.281 1.281 24 H -0.259 1.259 25 C -0.195 4.195 26 C -0.056 4.056 27 H 0.039 0.961 28 H 0.042 0.958 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.404 0.596 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.111 0.889 42 H 0.135 0.865 43 H 0.281 0.719 44 H 0.119 0.881 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.991 5.961 21.451 28.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C -0.014 4.014 4 C -0.012 4.012 5 O -0.303 6.303 6 C 0.002 3.998 7 C -0.180 4.180 8 C 0.301 3.699 9 O -0.429 6.429 10 N -0.372 5.372 11 C 0.055 3.945 12 C -0.209 4.209 13 C -0.071 4.071 14 C -0.243 4.243 15 C 0.114 3.886 16 O -0.117 6.117 17 C -0.467 4.467 18 H 0.125 0.875 19 C -0.139 4.139 20 N -0.512 5.512 21 Si 0.731 3.269 22 H -0.198 1.198 23 H -0.207 1.207 24 H -0.183 1.183 25 C -0.214 4.214 26 C -0.075 4.075 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.105 0.895 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.238 0.762 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.129 0.871 42 H 0.152 0.848 43 H 0.091 0.909 44 H 0.137 0.863 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -16.369 5.780 21.624 27.730 hybrid contribution -0.189 -0.393 -0.587 0.731 sum -16.558 5.387 21.037 27.308 Atomic orbital electron populations 1.22753 0.81031 1.02940 0.99869 1.87971 1.19622 1.27304 1.95371 1.22581 0.92412 0.85533 1.00906 1.22495 0.93187 0.97695 0.87774 1.87870 1.22196 1.82208 1.38071 1.22110 0.80800 1.00206 0.96714 1.21474 0.92971 1.04191 0.99412 1.20397 0.90064 0.77291 0.82155 1.90701 1.63099 1.50159 1.38949 1.46311 1.08909 1.62095 1.19866 1.20003 0.79466 1.00101 0.94917 1.19280 1.13199 0.93672 0.94725 1.20701 0.96021 0.98552 0.91816 1.21281 1.09346 0.94769 0.98926 1.19186 0.92242 0.91394 0.85823 1.83572 1.74833 1.36716 1.16558 1.20791 1.45107 0.91251 0.89584 0.87493 1.24491 0.95098 1.00276 0.94057 1.69643 1.42081 1.35684 1.03772 0.86168 0.78269 0.83468 0.78946 1.19802 1.20696 1.18311 1.20213 1.10601 0.99300 0.91290 1.20540 0.97179 0.93612 0.96163 0.94212 0.93956 0.89523 0.91807 0.92311 0.92300 0.91625 0.92379 0.92468 0.88025 0.87926 0.76162 0.91400 0.91401 0.87092 0.84773 0.90895 0.86342 0.86750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.38 -3.58 10.67 -40.08 -0.43 -4.01 16 3 C 0.06 0.44 6.32 37.16 0.23 0.67 16 4 C 0.07 0.51 6.32 37.16 0.23 0.74 16 5 O -0.38 -3.98 10.31 -40.08 -0.41 -4.40 16 6 C 0.08 0.78 5.23 37.16 0.19 0.97 16 7 C -0.14 -1.30 6.07 -27.88 -0.17 -1.47 16 8 C 0.51 6.19 7.83 -10.99 -0.09 6.10 16 9 O -0.55 -8.53 15.98 5.56 0.09 -8.44 16 10 N -0.72 -8.28 5.55 -61.47 -0.34 -8.62 16 11 C 0.18 2.33 5.80 -5.19 -0.03 2.30 16 12 C -0.21 -3.12 5.25 -104.57 -0.55 -3.67 16 13 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 14 C -0.22 -4.53 9.17 -39.40 -0.36 -4.89 16 15 C 0.17 3.64 6.65 -39.11 -0.26 3.38 16 16 O -0.21 -5.39 8.59 0.05 0.00 -5.39 16 17 C -0.39 -10.67 9.95 30.89 0.31 -10.37 16 18 H 0.11 2.97 5.44 -52.48 -0.29 2.68 16 19 C 0.06 1.77 5.49 -17.51 -0.10 1.67 16 20 N -0.87 -24.60 13.96 55.48 0.77 -23.82 16 21 Si 0.91 21.05 28.62 -169.99 -4.86 16.19 16 22 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 24 H -0.26 -6.04 7.11 56.52 0.40 -5.64 16 25 C -0.19 -3.60 9.99 -39.39 -0.39 -3.99 16 26 C -0.06 -0.87 9.69 -39.61 -0.38 -1.26 16 27 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 35 H 0.06 0.57 8.10 -51.93 -0.42 0.14 16 36 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.40 4.03 8.46 -40.82 -0.35 3.68 16 39 H 0.07 0.90 8.08 -51.94 -0.42 0.48 16 40 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 41 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 42 H 0.13 2.88 5.64 -52.49 -0.30 2.58 16 43 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.12 2.05 8.06 -52.49 -0.42 1.63 16 45 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 387.11 15.07 5.83 5.83 Total: -1.00 -31.72 387.11 -6.79 -38.52 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -6.82 Total: 3.91 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: -0.63 Total: -9.77 kcal Atomic # 7 Polarization: -32.88 SS G_CDS: 0.43 Total: -32.44 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.75 Total: -22.24 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.86 Total: 16.19 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.72 -6.79 -38.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067925898.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.833 kcal (2) G-P(sol) polarization free energy of solvation -31.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds