Wall clock time and date at job start Tue Mar 31 2020 13:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46509 * 109.47162 * 2 1 4 4 C 1.37099 * 119.99666 * 262.97941 * 3 2 1 5 5 H 1.08001 * 119.99932 * 142.21300 * 4 3 2 6 6 C 1.38953 * 119.99794 * 322.20953 * 4 3 2 7 7 N 1.31414 * 119.99717 * 157.14172 * 6 4 3 8 8 Si 1.86796 * 120.00367 * 337.13628 * 6 4 3 9 9 H 1.48498 * 109.46930 * 95.20588 * 8 6 4 10 10 H 1.48493 * 109.47488 * 215.20964 * 8 6 4 11 11 H 1.48511 * 109.47039 * 335.21045 * 8 6 4 12 12 C 1.34775 * 119.99864 * 82.97337 * 3 2 1 13 13 O 1.21296 * 119.99482 * 180.02562 * 12 3 2 14 14 C 1.50697 * 119.99967 * 0.02562 * 12 3 2 15 15 C 1.50701 * 109.46903 * 179.97438 * 14 12 3 16 16 C 1.38231 * 119.91227 * 89.99950 * 15 14 12 17 17 C 1.38665 * 120.09230 * 179.97438 * 16 15 14 18 18 O 1.35993 * 120.04613 * 180.02562 * 17 16 15 19 19 C 1.42904 * 117.00217 * 359.97438 * 18 17 16 20 20 C 1.38977 * 119.90891 * 0.27376 * 17 16 15 21 21 O 1.36097 * 120.08851 * 179.70265 * 20 17 16 22 22 C 1.42897 * 116.99660 * 90.00173 * 21 20 17 23 23 C 1.38979 * 119.82091 * 359.45628 * 20 17 16 24 24 O 1.36002 * 120.04377 * 180.25255 * 23 20 17 25 25 C 1.42902 * 116.99772 * 180.29248 * 24 23 20 26 26 C 1.38232 * 119.91185 * 269.98143 * 15 14 12 27 27 H 1.08996 * 109.46733 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46836 * 299.99610 * 1 2 3 29 29 H 1.08996 * 109.46741 * 60.00157 * 1 2 3 30 30 H 1.09001 * 109.47459 * 240.00025 * 2 1 3 31 31 H 1.09000 * 109.47629 * 119.99791 * 2 1 3 32 32 H 0.97001 * 119.99761 * 179.97438 * 7 6 4 33 33 H 1.08993 * 109.47447 * 60.00165 * 14 12 3 34 34 H 1.09003 * 109.47165 * 299.99270 * 14 12 3 35 35 H 1.08001 * 119.95472 * 359.97438 * 16 15 14 36 36 H 1.08993 * 109.47141 * 180.02562 * 19 18 17 37 37 H 1.08999 * 109.47075 * 59.99768 * 19 18 17 38 38 H 1.09006 * 109.46838 * 299.99892 * 19 18 17 39 39 H 1.08997 * 109.47401 * 59.99975 * 22 21 20 40 40 H 1.08999 * 109.46703 * 179.97438 * 22 21 20 41 41 H 1.08994 * 109.47217 * 299.99508 * 22 21 20 42 42 H 1.08998 * 109.47113 * 179.97438 * 25 24 23 43 43 H 1.08999 * 109.47480 * 299.99983 * 25 24 23 44 44 H 1.09009 * 109.46926 * 59.99837 * 25 24 23 45 45 H 1.07993 * 119.95204 * 0.03958 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3837 1.9791 -1.1784 5 1 2.1621 3.0228 -1.3459 6 6 3.0391 1.2423 -2.1574 7 7 2.9965 1.6318 -3.4117 8 14 3.9807 -0.3020 -1.6904 9 1 3.1113 -1.4899 -1.8857 10 1 5.1867 -0.4248 -2.5480 11 1 4.3926 -0.2189 -0.2660 12 6 2.1084 2.0642 1.1584 13 8 2.5123 3.2079 1.1583 14 6 1.7072 1.4068 2.4538 15 6 1.9021 2.3766 3.5907 16 6 0.8699 3.2167 3.9646 17 6 1.0449 4.1101 5.0106 18 8 0.0287 4.9358 5.3780 19 6 -1.1919 4.8295 4.6425 20 6 2.2620 4.1643 5.6794 21 8 2.4397 5.0440 6.7025 22 6 2.1098 4.5870 8.0156 23 6 3.2953 3.3141 5.3040 24 8 4.4865 3.3597 5.9588 25 6 5.5054 2.4614 5.5151 26 6 3.1123 2.4236 4.2570 27 1 -0.3632 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.4544 1.1176 -4.0950 33 1 2.3248 0.5242 2.6198 34 1 0.6590 1.1125 2.4025 35 1 -0.0741 3.1771 3.4415 36 1 -1.9166 5.5419 5.0364 37 1 -1.5869 3.8182 4.7384 38 1 -1.0028 5.0476 3.5914 39 1 2.7235 3.7212 8.2639 40 1 2.2979 5.3837 8.7354 41 1 1.0568 4.3077 8.0492 42 1 6.4015 2.6011 6.1198 43 1 5.1543 1.4346 5.6171 44 1 5.7380 2.6637 4.4695 45 1 3.9163 1.7659 3.9616 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068241164.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:56 Heat of formation + Delta-G solvation = -101.513694 kcal Electronic energy + Delta-G solvation = -28388.510523 eV Core-core repulsion = 24373.588214 eV Total energy + Delta-G solvation = -4014.922309 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.73497 -38.95719 -38.92740 -37.63777 -36.48817 -35.11024 -32.45398 -31.56897 -29.77083 -29.54406 -28.35263 -27.80905 -27.09611 -25.87885 -24.32982 -22.97142 -21.91143 -21.64305 -19.15384 -18.13595 -17.16438 -17.13603 -16.93521 -16.46010 -16.27474 -16.01234 -15.58739 -15.47809 -14.95183 -14.68242 -14.52199 -14.38811 -14.21729 -13.63263 -13.34810 -13.14372 -12.75200 -12.63089 -12.41336 -12.34242 -12.26084 -11.98813 -11.76294 -11.55926 -11.52183 -11.49248 -11.24540 -11.11091 -10.85968 -10.72557 -10.41931 -10.15931 -9.90138 -9.86766 -9.10753 -8.58119 -8.03569 -8.01871 -7.77933 -6.42606 -3.98525 1.30487 1.51322 2.86852 2.98890 3.18076 3.21875 3.55631 3.66475 3.70508 3.97542 4.11699 4.43097 4.79789 4.94514 4.98712 5.11137 5.11966 5.16315 5.18739 5.22492 5.23017 5.39590 5.41810 5.42493 5.49262 5.51218 5.55065 5.56308 5.63013 5.70930 5.80869 5.85945 5.94330 6.10517 6.21414 6.27767 6.36212 6.48410 6.68621 6.70414 7.10513 7.30865 7.52338 7.80083 8.26664 8.48703 8.94870 9.29510 9.75095 10.69646 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.016009 B = 0.003808 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.554090 B = 7351.315678 C = 8317.102074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.085 3.915 3 N -0.466 5.466 4 C -0.314 4.314 5 H 0.104 0.896 6 C 0.061 3.939 7 N -0.862 5.862 8 Si 0.873 3.127 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.265 1.265 12 C 0.468 3.532 13 O -0.553 6.553 14 C -0.109 4.109 15 C 0.029 3.971 16 C -0.217 4.217 17 C 0.149 3.851 18 O -0.306 6.306 19 C 0.025 3.975 20 C 0.018 3.982 21 O -0.312 6.312 22 C 0.035 3.965 23 C 0.149 3.851 24 O -0.306 6.306 25 C 0.025 3.975 26 C -0.218 4.218 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.274 0.726 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.133 0.867 36 H 0.099 0.901 37 H 0.055 0.945 38 H 0.060 0.940 39 H 0.041 0.959 40 H 0.087 0.913 41 H 0.041 0.959 42 H 0.099 0.901 43 H 0.055 0.945 44 H 0.061 0.939 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.566 -3.727 18.747 19.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.039 4.039 3 N -0.189 5.189 4 C -0.441 4.441 5 H 0.122 0.878 6 C -0.145 4.145 7 N -0.499 5.499 8 Si 0.700 3.300 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.189 1.189 12 C 0.256 3.744 13 O -0.434 6.434 14 C -0.149 4.149 15 C 0.028 3.972 16 C -0.236 4.236 17 C 0.103 3.897 18 O -0.219 6.219 19 C -0.070 4.070 20 C -0.027 4.027 21 O -0.228 6.228 22 C -0.059 4.059 23 C 0.103 3.897 24 O -0.219 6.219 25 C -0.070 4.070 26 C -0.237 4.237 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.150 0.850 36 H 0.117 0.883 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.060 0.940 40 H 0.106 0.894 41 H 0.060 0.940 42 H 0.118 0.882 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.178 -2.706 18.826 19.473 hybrid contribution 0.406 -1.533 -0.413 1.639 sum -3.773 -4.239 18.413 19.268 Atomic orbital electron populations 1.22148 0.96331 1.01044 1.02615 1.21812 0.94661 0.85841 1.01566 1.43772 1.57435 1.11452 1.06229 1.19021 1.37036 0.98547 0.89537 0.87822 1.25354 0.96282 0.98100 0.94725 1.69770 1.40115 1.40233 0.99739 0.87019 0.80424 0.82903 0.79647 1.20198 1.21311 1.18907 1.20005 0.82575 0.87991 0.83864 1.90610 1.48626 1.17985 1.86149 1.20873 1.03590 0.97861 0.92548 1.18985 0.91918 0.93775 0.92483 1.20859 1.01608 1.00644 1.00537 1.18836 0.86911 0.90047 0.93927 1.86102 1.21418 1.56958 1.57414 1.23112 0.84220 1.02450 0.97240 1.16853 0.90518 0.99016 0.96283 1.86178 1.86294 1.36662 1.13650 1.22933 0.99216 1.00301 0.83488 1.18846 0.85563 0.93144 0.92168 1.86101 1.20084 1.59148 1.56557 1.23116 0.89716 0.92817 1.01400 1.20878 0.99280 1.04062 0.99476 0.92618 0.93039 0.91416 0.90602 0.92294 0.91609 0.88924 0.88699 0.84965 0.88265 0.92633 0.92099 0.94008 0.89407 0.93997 0.88249 0.92638 0.92085 0.84988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 10.11 37.16 0.38 -2.18 16 2 C 0.08 1.60 4.46 -4.04 -0.02 1.59 16 3 N -0.47 -10.92 2.18 -114.80 -0.25 -11.18 16 4 C -0.31 -8.77 9.35 -14.93 -0.14 -8.91 16 5 H 0.10 3.29 7.92 -52.49 -0.42 2.87 16 6 C 0.06 1.67 5.24 -17.47 -0.09 1.57 16 7 N -0.86 -24.67 13.96 55.50 0.77 -23.89 16 8 Si 0.87 20.07 25.11 -169.99 -4.27 15.80 16 9 H -0.27 -5.83 6.67 56.52 0.38 -5.46 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.26 -6.00 7.11 56.52 0.40 -5.60 16 12 C 0.47 10.58 7.56 -10.99 -0.08 10.50 16 13 O -0.55 -14.93 15.91 5.54 0.09 -14.84 16 14 C -0.11 -1.80 4.44 -29.04 -0.13 -1.92 16 15 C 0.03 0.49 4.37 -104.63 -0.46 0.03 16 16 C -0.22 -3.49 8.69 -39.43 -0.34 -3.83 16 17 C 0.15 2.44 6.70 -39.15 -0.26 2.18 16 18 O -0.31 -4.52 10.28 -34.31 -0.35 -4.87 16 19 C 0.02 0.26 9.81 101.05 0.99 1.25 16 20 C 0.02 0.32 5.75 -39.03 -0.22 0.09 16 21 O -0.31 -5.15 9.99 -45.30 -0.45 -5.61 16 22 C 0.04 0.42 11.13 101.05 1.13 1.55 16 23 C 0.15 2.46 6.70 -39.15 -0.26 2.20 16 24 O -0.31 -4.59 10.28 -34.33 -0.35 -4.95 16 25 C 0.02 0.27 9.81 101.05 0.99 1.26 16 26 C -0.22 -3.56 8.69 -39.43 -0.34 -3.90 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.72 6.38 -51.93 -0.33 0.39 16 29 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.08 1.55 3.72 -51.93 -0.19 1.35 16 31 H 0.06 0.93 6.74 -51.93 -0.35 0.58 16 32 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 33 H 0.09 1.33 7.36 -51.93 -0.38 0.94 16 34 H 0.09 1.32 6.29 -51.93 -0.33 0.99 16 35 H 0.13 1.87 6.29 -52.49 -0.33 1.54 16 36 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 38 H 0.06 0.67 7.66 -51.93 -0.40 0.28 16 39 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 44 H 0.06 0.71 7.66 -51.92 -0.40 0.31 16 45 H 0.13 1.94 6.29 -52.49 -0.33 1.61 16 LS Contribution 368.34 15.07 5.55 5.55 Total: -1.00 -35.02 368.34 -4.50 -39.53 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -6.37 Total: 2.99 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: 1.13 Total: 1.47 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: 0.52 Total: -35.07 kcal Atomic # 8 Polarization: -29.20 SS G_CDS: -1.07 Total: -30.27 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -4.27 Total: 15.80 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.02 -4.50 -39.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241164.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.988 kcal (2) G-P(sol) polarization free energy of solvation -35.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds