Wall clock time and date at job start Tue Mar 31 2020 13:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35998 * 116.99571 * 2 1 4 4 C 1.38026 * 119.99006 * 359.97438 * 3 2 1 5 5 C 1.40050 * 119.82082 * 179.97438 * 4 3 2 6 6 C 1.46855 * 120.09329 * 179.97438 * 5 4 3 7 7 C 1.50707 * 119.99859 * 177.86542 * 6 5 4 8 8 O 1.21300 * 120.00199 * 357.86454 * 6 5 4 9 9 C 1.40005 * 119.80447 * 359.97438 * 5 4 3 10 10 C 1.37673 * 119.98174 * 0.02562 * 9 5 4 11 11 C 1.38925 * 120.17315 * 0.27182 * 10 9 5 12 12 O 1.35752 * 119.89806 * 179.70381 * 11 10 9 13 13 C 1.42899 * 117.00157 * 0.02562 * 12 11 10 14 14 C 1.52999 * 109.46724 * 179.97438 * 13 12 11 15 15 H 1.08999 * 109.47450 * 55.00012 * 14 13 12 16 16 O 1.42899 * 109.47101 * 294.99577 * 14 13 12 17 17 C 1.53007 * 109.47107 * 174.99725 * 14 13 12 18 18 N 1.46496 * 109.47236 * 184.99798 * 17 14 13 19 19 C 1.46504 * 119.99664 * 90.00572 * 18 17 14 20 20 C 1.36931 * 120.00025 * 270.00092 * 18 17 14 21 21 H 1.08006 * 120.00002 * 139.97800 * 20 18 17 22 22 C 1.38814 * 120.00440 * 319.97319 * 20 18 17 23 23 N 1.31611 * 120.00365 * 156.75895 * 22 20 18 24 24 Si 1.86808 * 119.99530 * 336.76397 * 22 20 18 25 25 H 1.48498 * 109.47315 * 94.84701 * 24 22 20 26 26 H 1.48497 * 109.46905 * 214.84647 * 24 22 20 27 27 H 1.48501 * 109.46815 * 334.84336 * 24 22 20 28 28 H 1.09001 * 109.46949 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47137 * 300.00151 * 1 2 3 30 30 H 1.09000 * 109.46860 * 60.00290 * 1 2 3 31 31 H 1.07995 * 120.08968 * 359.97438 * 4 3 2 32 32 H 1.08996 * 109.46796 * 5.25418 * 7 6 5 33 33 H 1.08996 * 109.47048 * 125.25211 * 7 6 5 34 34 H 1.09003 * 109.47096 * 245.25383 * 7 6 5 35 35 H 1.08004 * 120.00756 * 179.97438 * 9 5 4 36 36 H 1.07995 * 119.91387 * 179.97438 * 10 9 5 37 37 H 1.08995 * 109.47108 * 299.99560 * 13 12 11 38 38 H 1.08989 * 109.47231 * 59.99900 * 13 12 11 39 39 H 0.96690 * 113.99934 * 300.00402 * 16 14 13 40 40 H 1.09001 * 109.46617 * 305.00370 * 17 14 13 41 41 H 1.09000 * 109.46435 * 64.99889 * 17 14 13 42 42 H 1.08998 * 109.47343 * 95.01035 * 19 18 17 43 43 H 1.09004 * 109.46660 * 215.00972 * 19 18 17 44 44 H 1.09001 * 109.46831 * 335.00217 * 19 18 17 45 45 H 0.97005 * 119.99926 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2944 2.3692 -0.0005 5 6 1.9338 3.6152 0.0000 6 6 1.1395 4.8504 -0.0011 7 6 1.8290 6.1897 0.0481 8 8 -0.0715 4.7928 -0.0417 9 6 3.3323 3.6797 0.0016 10 6 4.0745 2.5201 0.0022 11 6 3.4394 1.2846 -0.0046 12 8 4.1767 0.1448 -0.0101 13 6 5.5981 0.2915 -0.0080 14 6 6.2535 -1.0910 -0.0143 15 1 5.8774 -1.6676 -0.8594 16 8 5.9419 -1.7713 1.2031 17 6 7.7706 -0.9356 -0.1379 18 7 8.3883 -2.2580 -0.2639 19 6 8.5873 -2.8502 -1.5891 20 6 8.7796 -2.9406 0.8568 21 1 8.6215 -4.0070 0.9224 22 6 9.3796 -2.2620 1.9087 23 7 9.3443 -2.7674 3.1234 24 14 10.2370 -0.6312 1.6001 25 1 9.2963 0.4833 1.8795 26 1 11.4187 -0.5168 2.4920 27 1 10.6775 -0.5640 0.1836 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.2158 2.3141 -0.0014 32 1 2.9075 6.0454 -0.0139 33 1 1.4954 6.8010 -0.7903 34 1 1.5826 6.6910 0.9841 35 1 3.8288 4.6388 0.0016 36 1 5.1532 2.5711 0.0030 37 1 5.9076 0.8447 -0.8947 38 1 5.9059 0.8351 0.8851 39 1 6.2476 -1.3142 1.9984 40 1 8.0041 -0.3398 -1.0203 41 1 8.1582 -0.4367 0.7504 42 1 9.5974 -2.6327 -1.9362 43 1 8.4482 -3.9296 -1.5292 44 1 7.8643 -2.4289 -2.2876 45 1 9.7639 -2.2933 3.8584 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068972495.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:14 Heat of formation + Delta-G solvation = -99.526745 kcal Electronic energy + Delta-G solvation = -27434.452956 eV Core-core repulsion = 23419.616808 eV Total energy + Delta-G solvation = -4014.836148 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -40.90836 -39.47437 -38.78959 -37.32726 -36.53067 -34.68022 -31.78893 -31.63668 -30.70127 -30.31673 -29.14510 -27.28613 -26.61012 -25.68168 -23.66396 -22.77920 -21.38352 -20.82504 -20.27794 -18.68910 -17.51027 -17.04185 -16.67601 -16.48326 -16.14345 -15.86487 -15.45859 -15.20492 -15.19561 -15.01066 -14.86634 -14.36787 -14.08519 -13.75764 -13.51883 -13.11318 -12.87267 -12.74618 -12.67788 -12.61234 -12.42196 -12.33305 -11.98201 -11.72336 -11.44273 -11.37405 -11.28378 -10.96423 -10.87703 -10.54768 -10.42943 -10.06757 -10.04372 -9.67796 -9.40479 -9.05964 -8.55171 -8.03380 -6.81664 -6.01930 -3.43462 0.41871 1.06713 2.15650 3.02830 3.08021 3.17729 3.39701 3.44448 3.48346 3.77023 4.42965 4.45656 4.57326 4.68738 4.77169 4.85648 4.89903 4.93161 5.00415 5.03981 5.05938 5.16251 5.19528 5.29713 5.33589 5.34901 5.39884 5.48278 5.56465 5.76712 5.80929 5.90324 5.94997 6.00264 6.18645 6.20599 6.31351 6.54360 6.66456 6.69405 6.93166 7.24236 7.42284 8.01608 8.37714 8.45861 8.93665 9.66416 10.06757 11.13571 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.017359 B = 0.002929 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.638054 B = 9556.063374 C =10369.504351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.300 6.300 3 C 0.083 3.917 4 C -0.116 4.116 5 C -0.187 4.187 6 C 0.401 3.599 7 C -0.202 4.202 8 O -0.469 6.469 9 C -0.062 4.062 10 C -0.196 4.196 11 C 0.148 3.852 12 O -0.282 6.282 13 C 0.019 3.981 14 C 0.095 3.905 15 H 0.098 0.902 16 O -0.529 6.529 17 C 0.111 3.889 18 N -0.601 5.601 19 C 0.123 3.877 20 C -0.254 4.254 21 H 0.077 0.923 22 C 0.036 3.964 23 N -0.894 5.894 24 Si 0.869 3.131 25 H -0.289 1.289 26 H -0.299 1.299 27 H -0.270 1.270 28 H 0.103 0.897 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.144 0.856 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.138 0.862 36 H 0.143 0.857 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.370 0.630 40 H 0.048 0.952 41 H 0.060 0.940 42 H 0.011 0.989 43 H 0.041 0.959 44 H 0.030 0.970 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.096 16.054 -7.674 22.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.213 6.213 3 C 0.037 3.963 4 C -0.135 4.135 5 C -0.189 4.189 6 C 0.281 3.719 7 C -0.259 4.259 8 O -0.346 6.346 9 C -0.080 4.080 10 C -0.215 4.215 11 C 0.100 3.900 12 O -0.194 6.194 13 C -0.058 4.058 14 C 0.032 3.968 15 H 0.115 0.885 16 O -0.332 6.332 17 C -0.016 4.016 18 N -0.324 5.324 19 C -0.022 4.022 20 C -0.383 4.383 21 H 0.095 0.905 22 C -0.165 4.165 23 N -0.535 5.535 24 Si 0.699 3.301 25 H -0.217 1.217 26 H -0.227 1.227 27 H -0.195 1.195 28 H 0.121 0.879 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.162 0.838 32 H 0.103 0.897 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.156 0.844 36 H 0.161 0.839 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.216 0.784 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.029 0.971 43 H 0.060 0.940 44 H 0.049 0.951 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.871 15.140 -7.954 22.663 hybrid contribution 0.847 1.766 0.343 1.988 sum -14.024 16.905 -7.611 23.246 Atomic orbital electron populations 1.23103 0.78504 1.04226 1.01174 1.86263 1.20982 1.25124 1.88965 1.18143 0.89206 0.85444 1.03502 1.21245 1.00500 0.90417 1.01351 1.20100 0.94191 0.94131 1.10441 1.22332 0.88492 0.90526 0.70586 1.22239 1.02739 0.95985 1.04889 1.90531 1.16570 1.90024 1.37465 1.21195 0.92254 0.98377 0.96180 1.21125 1.01025 0.90861 1.08516 1.18803 0.88607 0.86870 0.95690 1.86317 1.19304 1.27249 1.86493 1.24080 0.77754 1.02305 1.01616 1.22795 0.95537 0.88710 0.89783 0.88452 1.86628 1.81131 1.50986 1.14481 1.21829 0.90344 0.89349 1.00074 1.43867 1.67839 1.17727 1.02937 1.21120 0.97105 0.97693 0.86243 1.18708 1.33159 0.93984 0.92399 0.90544 1.25485 0.98034 0.97486 0.95457 1.69909 1.44615 1.40163 0.98808 0.87070 0.80094 0.84684 0.78279 1.21676 1.22677 1.19514 0.87912 0.92678 0.92751 0.83848 0.89685 0.88926 0.88665 0.84416 0.83912 0.91351 0.91632 0.78390 0.93381 0.92167 0.97066 0.93993 0.95068 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.30 -4.26 10.28 -34.40 -0.35 -4.61 16 3 C 0.08 1.14 6.69 -39.19 -0.26 0.87 16 4 C -0.12 -1.39 8.58 -38.98 -0.33 -1.72 16 5 C -0.19 -2.00 5.87 -105.07 -0.62 -2.62 16 6 C 0.40 4.00 7.21 -30.82 -0.22 3.78 16 7 C -0.20 -1.20 10.18 36.01 0.37 -0.83 16 8 O -0.47 -6.15 17.09 5.54 0.09 -6.06 16 9 C -0.06 -0.57 9.43 -39.13 -0.37 -0.94 16 10 C -0.20 -2.18 9.01 -39.53 -0.36 -2.54 16 11 C 0.15 2.09 6.71 -38.86 -0.26 1.83 16 12 O -0.28 -4.58 9.87 -40.05 -0.40 -4.97 16 13 C 0.02 0.27 4.37 37.16 0.16 0.43 16 14 C 0.09 1.73 3.49 -26.73 -0.09 1.64 16 15 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 16 O -0.53 -11.37 12.78 -40.09 -0.51 -11.88 16 17 C 0.11 2.20 4.18 -4.04 -0.02 2.18 16 18 N -0.60 -13.89 2.40 -181.11 -0.44 -14.32 16 19 C 0.12 2.41 10.69 59.85 0.64 3.05 16 20 C -0.25 -6.93 9.40 -15.06 -0.14 -7.07 16 21 H 0.08 2.32 8.06 -52.48 -0.42 1.90 16 22 C 0.04 0.99 5.27 -17.43 -0.09 0.90 16 23 N -0.89 -26.36 13.97 55.49 0.78 -25.58 16 24 Si 0.87 20.90 25.26 -169.99 -4.29 16.61 16 25 H -0.29 -6.49 6.65 56.52 0.38 -6.11 16 26 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 27 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 28 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 30 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 31 H 0.14 1.58 5.87 -52.49 -0.31 1.27 16 32 H 0.08 0.35 5.61 -51.93 -0.29 0.06 16 33 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.14 0.81 5.92 -52.48 -0.31 0.50 16 36 H 0.14 1.35 6.27 -52.49 -0.33 1.02 16 37 H 0.07 0.82 7.65 -51.93 -0.40 0.42 16 38 H 0.07 0.89 7.65 -51.94 -0.40 0.49 16 39 H 0.37 7.42 9.04 45.56 0.41 7.83 16 40 H 0.05 0.82 8.07 -51.93 -0.42 0.40 16 41 H 0.06 1.28 3.66 -51.93 -0.19 1.09 16 42 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 43 H 0.04 0.82 8.08 -51.93 -0.42 0.40 16 44 H 0.03 0.51 8.03 -51.93 -0.42 0.09 16 45 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 371.65 15.07 5.60 5.60 Total: -1.00 -34.31 371.65 -5.68 -39.99 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -5.56 Total: 5.04 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -0.61 Total: 0.18 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: 0.34 Total: -39.90 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -1.17 Total: -27.52 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.29 Total: 16.61 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.31 -5.68 -39.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972495.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.533 kcal (2) G-P(sol) polarization free energy of solvation -34.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds