Wall clock time and date at job start Tue Mar 31 2020 13:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35998 * 116.99571 * 2 1 4 4 C 1.38026 * 119.99006 * 359.97438 * 3 2 1 5 5 C 1.40050 * 119.82082 * 179.97438 * 4 3 2 6 6 C 1.46855 * 120.09329 * 179.97438 * 5 4 3 7 7 C 1.50707 * 119.99859 * 177.86542 * 6 5 4 8 8 O 1.21300 * 120.00199 * 357.86454 * 6 5 4 9 9 C 1.40005 * 119.80447 * 359.97438 * 5 4 3 10 10 C 1.37673 * 119.98174 * 0.02562 * 9 5 4 11 11 C 1.38925 * 120.17315 * 0.27182 * 10 9 5 12 12 O 1.35752 * 119.89806 * 179.70381 * 11 10 9 13 13 C 1.42899 * 117.00157 * 0.02562 * 12 11 10 14 14 C 1.52999 * 109.46724 * 179.97438 * 13 12 11 15 15 H 1.08999 * 109.47450 * 55.00012 * 14 13 12 16 16 O 1.42899 * 109.47101 * 294.99577 * 14 13 12 17 17 C 1.53007 * 109.47107 * 174.99725 * 14 13 12 18 18 N 1.46496 * 109.47236 * 184.99798 * 17 14 13 19 19 C 1.46504 * 119.99664 * 90.00572 * 18 17 14 20 20 C 1.36931 * 120.00025 * 270.00092 * 18 17 14 21 21 H 1.08006 * 120.00002 * 139.97800 * 20 18 17 22 22 C 1.38814 * 120.00440 * 319.97319 * 20 18 17 23 23 N 1.31611 * 120.00365 * 156.75895 * 22 20 18 24 24 Si 1.86808 * 119.99530 * 336.76397 * 22 20 18 25 25 H 1.48498 * 109.47315 * 94.84701 * 24 22 20 26 26 H 1.48497 * 109.46905 * 214.84647 * 24 22 20 27 27 H 1.48501 * 109.46815 * 334.84336 * 24 22 20 28 28 H 1.09001 * 109.46949 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47137 * 300.00151 * 1 2 3 30 30 H 1.09000 * 109.46860 * 60.00290 * 1 2 3 31 31 H 1.07995 * 120.08968 * 359.97438 * 4 3 2 32 32 H 1.08996 * 109.46796 * 5.25418 * 7 6 5 33 33 H 1.08996 * 109.47048 * 125.25211 * 7 6 5 34 34 H 1.09003 * 109.47096 * 245.25383 * 7 6 5 35 35 H 1.08004 * 120.00756 * 179.97438 * 9 5 4 36 36 H 1.07995 * 119.91387 * 179.97438 * 10 9 5 37 37 H 1.08995 * 109.47108 * 299.99560 * 13 12 11 38 38 H 1.08989 * 109.47231 * 59.99900 * 13 12 11 39 39 H 0.96690 * 113.99934 * 300.00402 * 16 14 13 40 40 H 1.09001 * 109.46617 * 305.00370 * 17 14 13 41 41 H 1.09000 * 109.46435 * 64.99889 * 17 14 13 42 42 H 1.08998 * 109.47343 * 95.01035 * 19 18 17 43 43 H 1.09004 * 109.46660 * 215.00972 * 19 18 17 44 44 H 1.09001 * 109.46831 * 335.00217 * 19 18 17 45 45 H 0.97005 * 119.99926 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2944 2.3692 -0.0005 5 6 1.9338 3.6152 0.0000 6 6 1.1395 4.8504 -0.0011 7 6 1.8290 6.1897 0.0481 8 8 -0.0715 4.7928 -0.0417 9 6 3.3323 3.6797 0.0016 10 6 4.0745 2.5201 0.0022 11 6 3.4394 1.2846 -0.0046 12 8 4.1767 0.1448 -0.0101 13 6 5.5981 0.2915 -0.0080 14 6 6.2535 -1.0910 -0.0143 15 1 5.8774 -1.6676 -0.8594 16 8 5.9419 -1.7713 1.2031 17 6 7.7706 -0.9356 -0.1379 18 7 8.3883 -2.2580 -0.2639 19 6 8.5873 -2.8502 -1.5891 20 6 8.7796 -2.9406 0.8568 21 1 8.6215 -4.0070 0.9224 22 6 9.3796 -2.2620 1.9087 23 7 9.3443 -2.7674 3.1234 24 14 10.2370 -0.6312 1.6001 25 1 9.2963 0.4833 1.8795 26 1 11.4187 -0.5168 2.4920 27 1 10.6775 -0.5640 0.1836 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.2158 2.3141 -0.0014 32 1 2.9075 6.0454 -0.0139 33 1 1.4954 6.8010 -0.7903 34 1 1.5826 6.6910 0.9841 35 1 3.8288 4.6388 0.0016 36 1 5.1532 2.5711 0.0030 37 1 5.9076 0.8447 -0.8947 38 1 5.9059 0.8351 0.8851 39 1 6.2476 -1.3142 1.9984 40 1 8.0041 -0.3398 -1.0203 41 1 8.1582 -0.4367 0.7504 42 1 9.5974 -2.6327 -1.9362 43 1 8.4482 -3.9296 -1.5292 44 1 7.8643 -2.4289 -2.2876 45 1 9.7639 -2.2933 3.8584 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068972495.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:13 Heat of formation + Delta-G solvation = -124.719670 kcal Electronic energy + Delta-G solvation = -27435.545404 eV Core-core repulsion = 23419.616808 eV Total energy + Delta-G solvation = -4015.928595 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.81199 -40.38071 -39.83151 -38.70261 -37.57112 -36.38997 -33.72312 -32.56872 -31.58717 -31.53009 -30.01081 -28.20084 -28.04462 -27.28188 -24.54188 -23.98195 -22.80610 -22.30823 -21.09233 -19.71525 -18.95525 -18.11512 -17.90278 -17.75412 -17.13432 -16.98217 -16.78990 -16.57658 -15.94281 -15.86393 -15.82421 -15.69645 -15.48123 -15.34030 -14.77851 -14.51979 -14.17814 -13.90526 -13.77424 -13.59701 -13.46878 -13.19217 -13.08836 -12.99301 -12.64482 -12.56635 -12.34243 -12.21541 -12.12925 -11.97282 -11.96095 -11.83040 -11.52091 -10.94963 -10.82776 -10.58331 -9.91645 -8.97349 -8.68064 -8.12978 -5.53613 -0.42916 0.23363 1.29864 1.35700 1.46957 1.57716 1.99266 2.25513 2.45520 2.64819 3.05645 3.08893 3.40791 3.62377 3.66691 3.81585 3.91086 4.01819 4.03493 4.09316 4.15529 4.28537 4.30441 4.32963 4.37502 4.44380 4.57808 4.60175 4.64701 4.67993 4.70696 4.71255 4.93250 5.02593 5.04910 5.11924 5.16243 5.18333 5.29673 5.51798 5.97610 6.01811 6.23589 6.47681 6.52650 6.89095 7.04783 7.65032 8.07007 9.07046 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.017359 B = 0.002929 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.638054 B = 9556.063374 C =10369.504351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.333 6.333 3 C 0.061 3.939 4 C -0.124 4.124 5 C -0.194 4.194 6 C 0.401 3.599 7 C -0.196 4.196 8 O -0.509 6.509 9 C -0.046 4.046 10 C -0.192 4.192 11 C 0.119 3.881 12 O -0.313 6.313 13 C 0.027 3.973 14 C 0.095 3.905 15 H 0.089 0.911 16 O -0.560 6.560 17 C 0.108 3.892 18 N -0.617 5.617 19 C 0.120 3.880 20 C -0.250 4.250 21 H 0.023 0.977 22 C -0.017 4.017 23 N -0.946 5.946 24 Si 0.941 3.059 25 H -0.257 1.257 26 H -0.311 1.311 27 H -0.260 1.260 28 H 0.117 0.883 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.144 0.856 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.182 0.818 36 H 0.166 0.834 37 H 0.103 0.897 38 H 0.078 0.922 39 H 0.371 0.629 40 H 0.089 0.911 41 H 0.049 0.951 42 H 0.021 0.979 43 H 0.028 0.972 44 H 0.066 0.934 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.536 20.395 -9.251 26.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.248 6.248 3 C 0.015 3.985 4 C -0.142 4.142 5 C -0.196 4.196 6 C 0.284 3.716 7 C -0.252 4.252 8 O -0.389 6.389 9 C -0.064 4.064 10 C -0.210 4.210 11 C 0.072 3.928 12 O -0.226 6.226 13 C -0.048 4.048 14 C 0.033 3.967 15 H 0.106 0.894 16 O -0.365 6.365 17 C -0.017 4.017 18 N -0.341 5.341 19 C -0.024 4.024 20 C -0.380 4.380 21 H 0.041 0.959 22 C -0.213 4.213 23 N -0.590 5.590 24 Si 0.769 3.231 25 H -0.183 1.183 26 H -0.240 1.240 27 H -0.184 1.184 28 H 0.135 0.865 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.161 0.839 32 H 0.128 0.872 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.199 0.801 36 H 0.183 0.817 37 H 0.121 0.879 38 H 0.096 0.904 39 H 0.218 0.782 40 H 0.107 0.893 41 H 0.067 0.933 42 H 0.039 0.961 43 H 0.047 0.953 44 H 0.084 0.916 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.332 19.513 -9.576 26.036 hybrid contribution 0.540 0.355 0.788 1.019 sum -13.793 19.868 -8.788 25.733 Atomic orbital electron populations 1.23314 0.76725 1.05463 1.01972 1.86200 1.23072 1.26134 1.89362 1.18418 0.89664 0.85700 1.04672 1.21364 1.00635 0.90771 1.01480 1.20457 0.95333 0.94013 1.09771 1.22926 0.87951 0.91849 0.68907 1.22288 1.03741 0.93246 1.05942 1.90527 1.18325 1.90579 1.39435 1.21630 0.91389 0.99676 0.93687 1.21445 1.02223 0.90048 1.07280 1.19136 0.88641 0.87323 0.97721 1.86231 1.19881 1.28989 1.87490 1.23867 0.77353 0.99753 1.03840 1.22691 0.95159 0.90705 0.88099 0.89354 1.86595 1.81556 1.52598 1.15734 1.21936 0.90746 0.87746 1.01322 1.44006 1.68597 1.18746 1.02763 1.21220 0.98679 0.97128 0.85369 1.18443 1.33142 0.92284 0.94129 0.95909 1.26087 0.98582 1.01988 0.94688 1.70059 1.46242 1.42716 0.99940 0.85895 0.78423 0.80731 0.78080 1.18345 1.24015 1.18440 0.86523 0.92038 0.91745 0.83867 0.87158 0.87786 0.87463 0.80069 0.81662 0.87905 0.90401 0.78212 0.89291 0.93295 0.96117 0.95313 0.91561 0.92869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.81 113.37 1.11 1.49 16 2 O -0.33 -9.78 10.28 -79.50 -0.82 -10.60 16 3 C 0.06 1.67 6.69 22.52 0.15 1.82 16 4 C -0.12 -2.89 8.58 22.66 0.19 -2.69 16 5 C -0.19 -3.69 5.87 -20.16 -0.12 -3.81 16 6 C 0.40 7.01 7.21 27.94 0.20 7.22 16 7 C -0.20 -1.48 10.18 71.24 0.73 -0.76 16 8 O -0.51 -12.84 17.09 -3.09 -0.05 -12.89 16 9 C -0.05 -0.66 9.43 22.56 0.21 -0.45 16 10 C -0.19 -3.56 9.01 22.30 0.20 -3.36 16 11 C 0.12 3.19 6.71 22.74 0.15 3.34 16 12 O -0.31 -9.89 9.87 -70.62 -0.70 -10.59 16 13 C 0.03 0.73 4.37 71.98 0.31 1.04 16 14 C 0.10 3.35 3.49 30.60 0.11 3.46 16 15 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 16 O -0.56 -24.55 12.78 -144.34 -1.84 -26.39 16 17 C 0.11 3.98 4.18 86.38 0.36 4.35 16 18 N -0.62 -27.98 2.40 -726.91 -1.75 -29.72 16 19 C 0.12 4.52 10.69 127.77 1.37 5.89 16 20 C -0.25 -14.02 9.40 84.03 0.79 -13.23 16 21 H 0.02 1.50 8.06 -2.91 -0.02 1.47 16 22 C -0.02 -0.96 5.27 84.86 0.45 -0.51 16 23 N -0.95 -57.61 13.97 21.65 0.30 -57.31 16 24 Si 0.94 42.49 25.26 68.60 1.73 44.22 16 25 H -0.26 -10.25 6.65 99.48 0.66 -9.59 16 26 H -0.31 -14.61 7.11 99.48 0.71 -13.91 16 27 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 28 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.06 1.07 7.66 -2.39 -0.02 1.05 16 30 H 0.06 1.07 7.66 -2.39 -0.02 1.06 16 31 H 0.14 3.20 5.87 -2.91 -0.02 3.19 16 32 H 0.11 0.25 5.61 -2.39 -0.01 0.23 16 33 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.18 0.95 5.92 -2.91 -0.02 0.93 16 36 H 0.17 2.26 6.27 -2.91 -0.02 2.24 16 37 H 0.10 1.98 7.65 -2.39 -0.02 1.96 16 38 H 0.08 1.85 7.65 -2.39 -0.02 1.83 16 39 H 0.37 15.29 9.04 -74.06 -0.67 14.62 16 40 H 0.09 2.56 8.07 -2.39 -0.02 2.54 16 41 H 0.05 1.92 3.66 -2.39 -0.01 1.91 16 42 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.03 1.12 8.08 -2.38 -0.02 1.10 16 44 H 0.07 2.00 8.03 -2.39 -0.02 1.98 16 45 H 0.26 15.05 8.31 -92.70 -0.77 14.28 16 Total: -1.00 -79.55 371.65 3.40 -76.15 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: 0.31 Total: 23.35 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: 6.22 Total: 3.79 kcal Atomic # 7 Polarization: -85.58 SS G_CDS: -1.44 Total: -87.03 kcal Atomic # 8 Polarization: -57.06 SS G_CDS: -3.41 Total: -60.47 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 1.73 Total: 44.22 kcal Total: -79.55 3.40 -76.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972495.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.574 kcal (2) G-P(sol) polarization free energy of solvation -79.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds