Wall clock time and date at job start Tue Mar 31 2020 13:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.36005 * 117.00261 * 2 1 4 4 C 1.38028 * 119.98538 * 359.72173 * 3 2 1 5 5 C 1.40045 * 119.82013 * 179.79323 * 4 3 2 6 6 C 1.46861 * 120.09382 * 180.21006 * 5 4 3 7 7 C 1.50700 * 119.99855 * 180.29572 * 6 5 4 8 8 O 1.21291 * 120.00231 * 0.29732 * 6 5 4 9 9 C 1.40005 * 119.80675 * 0.50276 * 5 4 3 10 10 C 1.37675 * 119.97596 * 359.73020 * 9 5 4 11 11 C 1.38918 * 120.17574 * 0.02562 * 10 9 5 12 12 O 1.35753 * 119.90192 * 179.97438 * 11 10 9 13 13 C 1.42900 * 116.99577 * 0.02562 * 12 11 10 14 14 C 1.53007 * 109.46967 * 180.02562 * 13 12 11 15 15 H 1.09006 * 109.46913 * 305.00593 * 14 13 12 16 16 O 1.42901 * 109.46786 * 65.00081 * 14 13 12 17 17 C 1.52995 * 109.47396 * 184.99986 * 14 13 12 18 18 N 1.46502 * 109.47465 * 179.97438 * 17 14 13 19 19 C 1.46497 * 119.99600 * 90.00002 * 18 17 14 20 20 C 1.36937 * 120.00179 * 270.00655 * 18 17 14 21 21 H 1.08000 * 120.00314 * 23.18653 * 20 18 17 22 22 C 1.38806 * 119.99865 * 203.18515 * 20 18 17 23 23 N 1.31621 * 119.99946 * 13.71188 * 22 20 18 24 24 Si 1.86806 * 120.00103 * 193.70657 * 22 20 18 25 25 H 1.48498 * 109.47045 * 60.00223 * 24 22 20 26 26 H 1.48499 * 109.47225 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46800 * 300.00266 * 24 22 20 28 28 H 1.08994 * 109.47287 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47176 * 59.99692 * 1 2 3 30 30 H 1.09008 * 109.47271 * 300.00181 * 1 2 3 31 31 H 1.07999 * 120.09482 * 0.02562 * 4 3 2 32 32 H 1.09007 * 109.46905 * 60.00051 * 7 6 5 33 33 H 1.08999 * 109.47355 * 179.97438 * 7 6 5 34 34 H 1.08997 * 109.47140 * 299.99935 * 7 6 5 35 35 H 1.08003 * 120.01623 * 179.70244 * 9 5 4 36 36 H 1.08001 * 119.91365 * 179.97438 * 10 9 5 37 37 H 1.08998 * 109.47522 * 299.99878 * 13 12 11 38 38 H 1.08995 * 109.47015 * 60.00475 * 13 12 11 39 39 H 0.96700 * 114.00126 * 60.00247 * 16 14 13 40 40 H 1.09002 * 109.47303 * 300.00609 * 17 14 13 41 41 H 1.09007 * 109.47093 * 60.00102 * 17 14 13 42 42 H 1.08995 * 109.46962 * 95.16532 * 19 18 17 43 43 H 1.08996 * 109.47106 * 215.16194 * 19 18 17 44 44 H 1.08998 * 109.47325 * 335.16295 * 19 18 17 45 45 H 0.96999 * 119.99886 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2944 2.3692 -0.0058 5 6 1.9339 3.6152 -0.0014 6 6 1.1396 4.8505 -0.0029 7 6 1.8299 6.1901 -0.0049 8 8 -0.0719 4.7926 -0.0025 9 6 3.3324 3.6797 -0.0018 10 6 4.0745 2.5200 -0.0009 11 6 3.4393 1.2845 -0.0001 12 8 4.1765 0.1446 0.0003 13 6 5.5980 0.2914 0.0004 14 6 6.2534 -1.0912 0.0002 15 1 5.8762 -1.6722 0.8418 16 8 5.9430 -1.7652 -1.2211 17 6 7.7703 -0.9366 0.1260 18 7 8.3978 -2.2604 0.1264 19 6 8.8116 -2.8752 -1.1373 20 6 8.5975 -2.9232 1.3080 21 1 7.9918 -2.6849 2.1699 22 6 9.5782 -3.9013 1.3979 23 7 10.4884 -4.0094 0.4533 24 14 9.6064 -5.0641 2.8597 25 1 8.3333 -5.8270 2.9099 26 1 10.7443 -6.0079 2.7195 27 1 9.7643 -4.2814 4.1117 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 0.2159 2.3143 -0.0099 32 1 2.4529 6.2764 -0.8952 33 1 1.0829 6.9838 -0.0062 34 1 2.4533 6.2789 0.8848 35 1 3.8290 4.6387 -0.0033 36 1 5.1533 2.5709 -0.0016 37 1 5.9068 0.8395 -0.8897 38 1 5.9065 0.8399 0.8903 39 1 6.2495 -1.3040 -2.0138 40 1 8.1474 -0.3555 -0.7156 41 1 8.0071 -0.4224 1.0576 42 1 9.8662 -2.6650 -1.3154 43 1 8.6600 -3.9532 -1.0837 44 1 8.2165 -2.4647 -1.9531 45 1 11.1735 -4.6932 0.5160 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068972496.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:18 Heat of formation + Delta-G solvation = -107.544426 kcal Electronic energy + Delta-G solvation = -27003.828862 eV Core-core repulsion = 22988.645041 eV Total energy + Delta-G solvation = -4015.183821 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.93055 -39.49995 -38.82160 -37.34094 -36.52343 -34.70656 -31.77416 -31.39805 -30.72336 -30.13915 -29.06336 -27.31944 -26.13171 -25.62138 -23.67235 -22.86127 -21.48437 -20.67245 -20.31519 -18.62727 -17.44177 -17.06638 -16.80006 -16.36071 -16.10221 -15.73893 -15.70912 -15.22971 -15.02682 -14.90107 -14.83581 -14.32688 -14.26277 -13.62836 -13.36455 -13.13768 -12.97440 -12.80741 -12.66281 -12.64156 -12.39350 -11.89713 -11.72689 -11.52282 -11.31685 -11.16266 -11.02026 -10.84513 -10.71974 -10.42424 -10.36369 -10.09039 -10.07860 -9.89204 -9.61518 -9.08769 -8.52882 -8.06143 -6.73850 -5.73251 -3.20740 0.39786 1.03907 2.13200 3.00864 3.05580 3.39278 3.44687 3.45817 3.46741 3.74921 4.42011 4.49275 4.60256 4.69047 4.78489 4.81453 4.88159 4.95402 4.97937 4.99928 5.01764 5.11806 5.19799 5.31833 5.33264 5.40836 5.42258 5.48345 5.71777 5.79140 5.86119 5.90937 5.94642 5.97804 6.28739 6.46527 6.62602 6.81200 6.90900 7.21941 7.39366 7.42545 7.71721 7.80217 8.16380 8.38292 9.21784 9.84370 10.32643 11.30804 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.021011 B = 0.002377 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.296565 B =11779.177722 C =12254.586613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.300 6.300 3 C 0.082 3.918 4 C -0.116 4.116 5 C -0.187 4.187 6 C 0.400 3.600 7 C -0.200 4.200 8 O -0.467 6.467 9 C -0.060 4.060 10 C -0.196 4.196 11 C 0.148 3.852 12 O -0.284 6.284 13 C 0.023 3.977 14 C 0.086 3.914 15 H 0.104 0.896 16 O -0.542 6.542 17 C 0.129 3.871 18 N -0.589 5.589 19 C 0.167 3.833 20 C -0.260 4.260 21 H 0.066 0.934 22 C 0.004 3.996 23 N -0.905 5.905 24 Si 0.905 3.095 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.283 1.283 28 H 0.102 0.898 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.144 0.856 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.136 0.864 36 H 0.144 0.856 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.360 0.640 40 H 0.042 0.958 41 H 0.058 0.942 42 H 0.028 0.972 43 H 0.039 0.961 44 H 0.002 0.998 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.831 18.591 -3.025 24.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.214 6.214 3 C 0.036 3.964 4 C -0.135 4.135 5 C -0.189 4.189 6 C 0.279 3.721 7 C -0.257 4.257 8 O -0.344 6.344 9 C -0.079 4.079 10 C -0.215 4.215 11 C 0.100 3.900 12 O -0.196 6.196 13 C -0.053 4.053 14 C 0.023 3.977 15 H 0.122 0.878 16 O -0.345 6.345 17 C 0.000 4.000 18 N -0.310 5.310 19 C 0.022 3.978 20 C -0.390 4.390 21 H 0.084 0.916 22 C -0.194 4.194 23 N -0.550 5.550 24 Si 0.735 3.265 25 H -0.210 1.210 26 H -0.216 1.216 27 H -0.209 1.209 28 H 0.121 0.879 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.161 0.839 32 H 0.112 0.888 33 H 0.102 0.898 34 H 0.113 0.887 35 H 0.154 0.846 36 H 0.162 0.838 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.206 0.794 40 H 0.060 0.940 41 H 0.077 0.923 42 H 0.047 0.953 43 H 0.058 0.942 44 H 0.021 0.979 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -16.509 17.561 -2.634 24.246 hybrid contribution 0.343 0.049 0.464 0.579 sum -16.166 17.610 -2.170 24.003 Atomic orbital electron populations 1.23101 0.78498 1.04227 1.01177 1.86260 1.20987 1.25153 1.88968 1.18156 0.89255 0.85435 1.03526 1.21252 1.00511 0.90444 1.01335 1.20097 0.94219 0.94091 1.10473 1.22354 0.88529 0.90536 0.70659 1.22245 1.03076 0.95718 1.04636 1.90532 1.16578 1.90081 1.37196 1.21119 0.92174 0.98399 0.96171 1.21117 1.01020 0.90815 1.08519 1.18787 0.88578 0.86862 0.95785 1.86325 1.19430 1.27296 1.86546 1.23994 0.77636 1.02013 1.01627 1.23118 0.97056 0.88948 0.88607 0.87775 1.86692 1.81880 1.51115 1.14814 1.21224 0.89492 0.89242 1.00082 1.43686 1.68931 1.14358 1.04019 1.20779 0.96228 0.96841 0.83938 1.19113 1.13187 1.16644 0.90026 0.91571 1.25005 0.95607 1.00825 0.97982 1.70065 1.15467 1.34981 1.34465 0.86330 0.77132 0.80897 0.82144 1.20971 1.21599 1.20906 0.87924 0.92719 0.92707 0.83879 0.88759 0.89789 0.88741 0.84595 0.83844 0.91819 0.91038 0.79420 0.94019 0.92344 0.95341 0.94211 0.97938 0.93656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.30 -4.13 10.27 -34.43 -0.35 -4.48 16 3 C 0.08 1.08 6.69 -39.20 -0.26 0.81 16 4 C -0.12 -1.32 8.58 -38.98 -0.33 -1.66 16 5 C -0.19 -1.88 5.87 -105.07 -0.62 -2.49 16 6 C 0.40 3.76 7.22 -30.82 -0.22 3.54 16 7 C -0.20 -1.06 8.92 36.01 0.32 -0.74 16 8 O -0.47 -5.93 17.07 5.55 0.09 -5.83 16 9 C -0.06 -0.51 9.46 -39.13 -0.37 -0.88 16 10 C -0.20 -1.97 9.01 -39.54 -0.36 -2.33 16 11 C 0.15 1.95 6.71 -38.87 -0.26 1.69 16 12 O -0.28 -4.36 9.87 -40.05 -0.40 -4.75 16 13 C 0.02 0.31 4.37 37.16 0.16 0.47 16 14 C 0.09 1.46 3.52 -26.73 -0.09 1.37 16 15 H 0.10 2.06 8.14 -51.93 -0.42 1.64 16 16 O -0.54 -9.88 12.11 -40.08 -0.49 -10.37 16 17 C 0.13 2.43 5.34 -4.04 -0.02 2.40 16 18 N -0.59 -14.53 2.84 -181.13 -0.52 -15.05 16 19 C 0.17 4.08 8.66 59.85 0.52 4.60 16 20 C -0.26 -7.12 9.65 -15.06 -0.15 -7.27 16 21 H 0.07 1.76 7.87 -52.49 -0.41 1.35 16 22 C 0.00 0.12 5.09 -17.43 -0.09 0.04 16 23 N -0.91 -26.41 10.76 55.49 0.60 -25.81 16 24 Si 0.91 21.97 29.58 -169.99 -5.03 16.94 16 25 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 28 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.43 7.65 -51.93 -0.40 0.03 16 30 H 0.05 0.44 7.67 -51.92 -0.40 0.04 16 31 H 0.14 1.51 5.87 -52.49 -0.31 1.20 16 32 H 0.09 0.34 8.08 -51.92 -0.42 -0.08 16 33 H 0.08 0.44 8.12 -51.93 -0.42 0.02 16 34 H 0.09 0.35 8.08 -51.93 -0.42 -0.07 16 35 H 0.14 0.68 7.03 -52.48 -0.37 0.31 16 36 H 0.14 1.17 6.27 -52.49 -0.33 0.84 16 37 H 0.06 0.69 7.65 -51.93 -0.40 0.29 16 38 H 0.07 0.81 7.65 -51.93 -0.40 0.42 16 39 H 0.36 5.15 8.80 45.56 0.40 5.55 16 40 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 41 H 0.06 1.07 8.04 -51.93 -0.42 0.65 16 42 H 0.03 0.75 7.33 -51.93 -0.38 0.37 16 43 H 0.04 1.07 7.37 -51.93 -0.38 0.69 16 44 H 0.00 0.04 7.00 -51.93 -0.36 -0.32 16 45 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 375.84 15.07 5.66 5.66 Total: -1.00 -34.98 375.84 -7.01 -41.99 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -5.81 Total: 0.92 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -0.78 Total: 0.78 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: 0.08 Total: -40.86 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -1.14 Total: -25.44 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.98 -7.01 -41.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972496.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.552 kcal (2) G-P(sol) polarization free energy of solvation -34.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds