Wall clock time and date at job start Tue Mar 31 2020 13:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.36005 * 117.00261 * 2 1 4 4 C 1.38028 * 119.98538 * 359.72173 * 3 2 1 5 5 C 1.40045 * 119.82013 * 179.79323 * 4 3 2 6 6 C 1.46861 * 120.09382 * 180.21006 * 5 4 3 7 7 C 1.50700 * 119.99855 * 180.29572 * 6 5 4 8 8 O 1.21291 * 120.00231 * 0.29732 * 6 5 4 9 9 C 1.40005 * 119.80675 * 0.50276 * 5 4 3 10 10 C 1.37675 * 119.97596 * 359.73020 * 9 5 4 11 11 C 1.38918 * 120.17574 * 0.02562 * 10 9 5 12 12 O 1.35753 * 119.90192 * 179.97438 * 11 10 9 13 13 C 1.42900 * 116.99577 * 0.02562 * 12 11 10 14 14 C 1.53007 * 109.46967 * 180.02562 * 13 12 11 15 15 H 1.09006 * 109.46913 * 305.00593 * 14 13 12 16 16 O 1.42901 * 109.46786 * 65.00081 * 14 13 12 17 17 C 1.52995 * 109.47396 * 184.99986 * 14 13 12 18 18 N 1.46502 * 109.47465 * 179.97438 * 17 14 13 19 19 C 1.46497 * 119.99600 * 90.00002 * 18 17 14 20 20 C 1.36937 * 120.00179 * 270.00655 * 18 17 14 21 21 H 1.08000 * 120.00314 * 23.18653 * 20 18 17 22 22 C 1.38806 * 119.99865 * 203.18515 * 20 18 17 23 23 N 1.31621 * 119.99946 * 13.71188 * 22 20 18 24 24 Si 1.86806 * 120.00103 * 193.70657 * 22 20 18 25 25 H 1.48498 * 109.47045 * 60.00223 * 24 22 20 26 26 H 1.48499 * 109.47225 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46800 * 300.00266 * 24 22 20 28 28 H 1.08994 * 109.47287 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47176 * 59.99692 * 1 2 3 30 30 H 1.09008 * 109.47271 * 300.00181 * 1 2 3 31 31 H 1.07999 * 120.09482 * 0.02562 * 4 3 2 32 32 H 1.09007 * 109.46905 * 60.00051 * 7 6 5 33 33 H 1.08999 * 109.47355 * 179.97438 * 7 6 5 34 34 H 1.08997 * 109.47140 * 299.99935 * 7 6 5 35 35 H 1.08003 * 120.01623 * 179.70244 * 9 5 4 36 36 H 1.08001 * 119.91365 * 179.97438 * 10 9 5 37 37 H 1.08998 * 109.47522 * 299.99878 * 13 12 11 38 38 H 1.08995 * 109.47015 * 60.00475 * 13 12 11 39 39 H 0.96700 * 114.00126 * 60.00247 * 16 14 13 40 40 H 1.09002 * 109.47303 * 300.00609 * 17 14 13 41 41 H 1.09007 * 109.47093 * 60.00102 * 17 14 13 42 42 H 1.08995 * 109.46962 * 95.16532 * 19 18 17 43 43 H 1.08996 * 109.47106 * 215.16194 * 19 18 17 44 44 H 1.08998 * 109.47325 * 335.16295 * 19 18 17 45 45 H 0.96999 * 119.99886 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2944 2.3692 -0.0058 5 6 1.9339 3.6152 -0.0014 6 6 1.1396 4.8505 -0.0029 7 6 1.8299 6.1901 -0.0049 8 8 -0.0719 4.7926 -0.0025 9 6 3.3324 3.6797 -0.0018 10 6 4.0745 2.5200 -0.0009 11 6 3.4393 1.2845 -0.0001 12 8 4.1765 0.1446 0.0003 13 6 5.5980 0.2914 0.0004 14 6 6.2534 -1.0912 0.0002 15 1 5.8762 -1.6722 0.8418 16 8 5.9430 -1.7652 -1.2211 17 6 7.7703 -0.9366 0.1260 18 7 8.3978 -2.2604 0.1264 19 6 8.8116 -2.8752 -1.1373 20 6 8.5975 -2.9232 1.3080 21 1 7.9918 -2.6849 2.1699 22 6 9.5782 -3.9013 1.3979 23 7 10.4884 -4.0094 0.4533 24 14 9.6064 -5.0641 2.8597 25 1 8.3333 -5.8270 2.9099 26 1 10.7443 -6.0079 2.7195 27 1 9.7643 -4.2814 4.1117 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 0.2159 2.3143 -0.0099 32 1 2.4529 6.2764 -0.8952 33 1 1.0829 6.9838 -0.0062 34 1 2.4533 6.2789 0.8848 35 1 3.8290 4.6387 -0.0033 36 1 5.1533 2.5709 -0.0016 37 1 5.9068 0.8395 -0.8897 38 1 5.9065 0.8399 0.8903 39 1 6.2495 -1.3040 -2.0138 40 1 8.1474 -0.3555 -0.7156 41 1 8.0071 -0.4224 1.0576 42 1 9.8662 -2.6650 -1.3154 43 1 8.6600 -3.9532 -1.0837 44 1 8.2165 -2.4647 -1.9531 45 1 11.1735 -4.6932 0.5160 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068972496.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:17 Heat of formation + Delta-G solvation = -132.138097 kcal Electronic energy + Delta-G solvation = -27004.895323 eV Core-core repulsion = 22988.645041 eV Total energy + Delta-G solvation = -4016.250283 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.77906 -40.35243 -39.80382 -38.62841 -37.52208 -36.46261 -33.33369 -32.47097 -31.51670 -31.36249 -29.95515 -28.05723 -27.91334 -27.25878 -24.53720 -24.05983 -22.77190 -22.15807 -21.07741 -19.54850 -18.83643 -18.25259 -17.91319 -17.46384 -17.08692 -16.80513 -16.74444 -16.65804 -15.91791 -15.80077 -15.67753 -15.64497 -15.57506 -15.19464 -14.67842 -14.60521 -13.90157 -13.80186 -13.57721 -13.42219 -13.16498 -13.01083 -12.97097 -12.78731 -12.59209 -12.53772 -12.31226 -12.21243 -12.11227 -11.98200 -11.93222 -11.90385 -11.69973 -11.09899 -10.82019 -10.56575 -9.88593 -8.94435 -8.72509 -7.82002 -5.31090 -0.39508 0.26397 1.38613 1.44830 1.48640 1.54399 2.04001 2.27486 2.51526 2.68123 3.09666 3.30170 3.53572 3.62688 3.78173 3.87853 4.00555 4.03920 4.08250 4.14809 4.24910 4.28656 4.31283 4.44312 4.47753 4.50269 4.56876 4.63252 4.64950 4.73079 4.92304 4.96969 4.98155 5.08886 5.20016 5.20710 5.33119 5.40009 5.54896 5.62854 5.73537 6.03409 6.33044 6.51069 6.55203 6.98178 7.15800 7.88282 8.30423 9.19648 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.021011 B = 0.002377 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.296565 B =11779.177722 C =12254.586613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.334 6.334 3 C 0.058 3.942 4 C -0.125 4.125 5 C -0.195 4.195 6 C 0.400 3.600 7 C -0.194 4.194 8 O -0.510 6.510 9 C -0.043 4.043 10 C -0.190 4.190 11 C 0.120 3.880 12 O -0.317 6.317 13 C 0.033 3.967 14 C 0.097 3.903 15 H 0.068 0.932 16 O -0.566 6.566 17 C 0.127 3.873 18 N -0.610 5.610 19 C 0.182 3.818 20 C -0.265 4.265 21 H 0.068 0.932 22 C -0.053 4.053 23 N -0.936 5.936 24 Si 0.965 3.035 25 H -0.285 1.285 26 H -0.293 1.293 27 H -0.271 1.271 28 H 0.116 0.884 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.141 0.859 32 H 0.120 0.880 33 H 0.083 0.917 34 H 0.119 0.881 35 H 0.182 0.818 36 H 0.169 0.831 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.378 0.622 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.005 0.995 43 H 0.002 0.998 44 H 0.039 0.961 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.745 21.744 -2.930 27.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.248 6.248 3 C 0.013 3.987 4 C -0.144 4.144 5 C -0.196 4.196 6 C 0.282 3.718 7 C -0.251 4.251 8 O -0.390 6.390 9 C -0.061 4.061 10 C -0.208 4.208 11 C 0.073 3.927 12 O -0.230 6.230 13 C -0.042 4.042 14 C 0.035 3.965 15 H 0.086 0.914 16 O -0.372 6.372 17 C 0.000 4.000 18 N -0.332 5.332 19 C 0.037 3.963 20 C -0.396 4.396 21 H 0.086 0.914 22 C -0.248 4.248 23 N -0.582 5.582 24 Si 0.793 3.207 25 H -0.212 1.212 26 H -0.219 1.219 27 H -0.197 1.197 28 H 0.134 0.866 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.159 0.841 32 H 0.138 0.862 33 H 0.102 0.898 34 H 0.137 0.863 35 H 0.199 0.801 36 H 0.187 0.813 37 H 0.113 0.887 38 H 0.110 0.890 39 H 0.226 0.774 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.023 0.977 43 H 0.021 0.979 44 H 0.057 0.943 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -16.447 20.769 -2.539 26.613 hybrid contribution 0.196 -0.824 0.393 0.934 sum -16.250 19.945 -2.146 25.816 Atomic orbital electron populations 1.23296 0.76823 1.05384 1.01927 1.86195 1.22983 1.26237 1.89411 1.18448 0.89805 0.85625 1.04859 1.21357 1.00564 0.90881 1.01581 1.20438 0.95418 0.93849 1.09923 1.22973 0.87974 0.91932 0.68915 1.22296 1.03337 0.92543 1.06884 1.90528 1.18432 1.90664 1.39349 1.21567 0.91211 0.99792 0.93522 1.21460 1.02328 0.89884 1.07120 1.19113 0.88520 0.87360 0.97693 1.86234 1.20185 1.29059 1.87515 1.23791 0.77010 0.99292 1.04128 1.22662 0.95895 0.90716 0.87276 0.91428 1.86646 1.82229 1.52458 1.15898 1.21437 0.89993 0.86824 1.01717 1.43921 1.69610 1.16559 1.03086 1.20504 0.95556 0.94903 0.85351 1.19452 1.12398 1.16709 0.91018 0.91441 1.25747 0.95805 1.02615 1.00627 1.70214 1.16196 1.35586 1.36231 0.85384 0.76588 0.78950 0.79794 1.21167 1.21914 1.19663 0.86610 0.91909 0.91986 0.84103 0.86206 0.89831 0.86275 0.80107 0.81332 0.88690 0.88980 0.77393 0.91001 0.91673 0.97654 0.97886 0.94304 0.94282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.81 113.37 1.11 1.49 16 2 O -0.33 -9.53 10.27 -79.58 -0.82 -10.35 16 3 C 0.06 1.52 6.69 22.52 0.15 1.67 16 4 C -0.12 -2.80 8.58 22.66 0.19 -2.61 16 5 C -0.19 -3.46 5.87 -20.15 -0.12 -3.58 16 6 C 0.40 6.62 7.22 27.94 0.20 6.82 16 7 C -0.19 -1.26 8.92 71.24 0.64 -0.62 16 8 O -0.51 -12.62 17.07 -3.06 -0.05 -12.67 16 9 C -0.04 -0.54 9.46 22.57 0.21 -0.33 16 10 C -0.19 -3.13 9.01 22.30 0.20 -2.93 16 11 C 0.12 3.02 6.71 22.73 0.15 3.17 16 12 O -0.32 -9.45 9.87 -70.62 -0.70 -10.14 16 13 C 0.03 0.79 4.37 71.98 0.31 1.10 16 14 C 0.10 3.20 3.52 30.59 0.11 3.31 16 15 H 0.07 2.72 8.14 -2.38 -0.02 2.70 16 16 O -0.57 -20.09 12.11 -144.34 -1.75 -21.84 16 17 C 0.13 4.55 5.34 86.38 0.46 5.01 16 18 N -0.61 -29.93 2.84 -726.96 -2.07 -31.99 16 19 C 0.18 8.96 8.66 127.77 1.11 10.06 16 20 C -0.27 -14.61 9.65 84.03 0.81 -13.80 16 21 H 0.07 3.60 7.87 -2.91 -0.02 3.58 16 22 C -0.05 -2.99 5.09 84.86 0.43 -2.56 16 23 N -0.94 -55.77 10.76 21.65 0.23 -55.53 16 24 Si 0.96 45.75 29.58 68.60 2.03 47.78 16 25 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 26 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 27 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 28 H 0.12 1.76 8.14 -2.39 -0.02 1.75 16 29 H 0.06 1.04 7.65 -2.39 -0.02 1.02 16 30 H 0.06 1.03 7.67 -2.38 -0.02 1.02 16 31 H 0.14 3.07 5.87 -2.91 -0.02 3.05 16 32 H 0.12 0.22 8.08 -2.38 -0.02 0.20 16 33 H 0.08 0.61 8.12 -2.39 -0.02 0.59 16 34 H 0.12 0.24 8.08 -2.39 -0.02 0.23 16 35 H 0.18 0.61 7.03 -2.91 -0.02 0.59 16 36 H 0.17 1.86 6.27 -2.91 -0.02 1.84 16 37 H 0.10 1.65 7.65 -2.39 -0.02 1.63 16 38 H 0.09 1.78 7.65 -2.39 -0.02 1.76 16 39 H 0.38 10.00 8.80 -74.06 -0.65 9.35 16 40 H 0.07 2.15 8.07 -2.39 -0.02 2.13 16 41 H 0.06 2.24 8.04 -2.38 -0.02 2.22 16 42 H 0.01 0.28 7.33 -2.39 -0.02 0.26 16 43 H 0.00 0.13 7.37 -2.39 -0.02 0.11 16 44 H 0.04 1.58 7.00 -2.39 -0.02 1.56 16 45 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -79.97 375.84 3.21 -76.76 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: 0.36 Total: 11.77 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: 5.98 Total: 6.22 kcal Atomic # 7 Polarization: -85.69 SS G_CDS: -1.83 Total: -87.53 kcal Atomic # 8 Polarization: -51.68 SS G_CDS: -3.32 Total: -55.00 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -79.97 3.21 -76.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972496.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.380 kcal (2) G-P(sol) polarization free energy of solvation -79.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds