Wall clock time and date at job start Tue Mar 31 2020 14:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99985 * 2 1 4 4 H 1.48500 * 109.46798 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47215 * 299.99881 * 3 2 1 6 6 H 1.48494 * 109.47431 * 60.00247 * 3 2 1 7 7 C 1.37877 * 119.99528 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99464 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00480 * 359.97438 * 7 2 1 10 10 N 1.46493 * 109.47443 * 179.97438 * 9 7 2 11 11 C 1.46505 * 119.99899 * 90.00099 * 10 9 7 12 12 C 1.50703 * 109.47064 * 270.00279 * 11 10 9 13 13 C 1.34515 * 125.79060 * 89.99944 * 12 11 10 14 14 C 1.41380 * 106.83832 * 179.97438 * 13 12 11 15 15 C 1.34506 * 106.84493 * 359.97438 * 14 13 12 16 16 O 1.34306 * 125.78568 * 269.69282 * 12 11 10 17 17 C 1.34773 * 120.00646 * 270.00265 * 10 9 7 18 18 O 1.21287 * 119.99667 * 359.97438 * 17 10 9 19 19 C 1.50702 * 120.00755 * 179.97438 * 17 10 9 20 20 C 1.52997 * 109.47266 * 180.02562 * 19 17 10 21 21 C 1.53010 * 109.46938 * 179.97438 * 20 19 17 22 22 C 1.53002 * 109.46707 * 179.97438 * 21 20 19 23 23 N 1.46504 * 109.46599 * 180.02562 * 22 21 20 24 24 C 1.34770 * 120.00019 * 180.02562 * 23 22 21 25 25 N 1.34780 * 120.00282 * 179.97438 * 24 23 22 26 26 O 1.21595 * 119.99859 * 359.97438 * 24 23 22 27 27 H 0.97003 * 119.99687 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.46922 * 60.00021 * 9 7 2 29 29 H 1.08996 * 109.47481 * 300.00312 * 9 7 2 30 30 H 1.09002 * 109.47068 * 30.00248 * 11 10 9 31 31 H 1.09001 * 109.47372 * 150.00336 * 11 10 9 32 32 H 1.07996 * 126.58016 * 0.03378 * 13 12 11 33 33 H 1.08006 * 126.57610 * 179.97438 * 14 13 12 34 34 H 1.08005 * 125.79499 * 180.02562 * 15 14 13 35 35 H 1.09004 * 109.46469 * 300.00239 * 19 17 10 36 36 H 1.09002 * 109.46873 * 59.99721 * 19 17 10 37 37 H 1.09006 * 109.46912 * 299.99482 * 20 19 17 38 38 H 1.09002 * 109.47551 * 59.99954 * 20 19 17 39 39 H 1.08994 * 109.46637 * 299.99814 * 21 20 19 40 40 H 1.09002 * 109.46984 * 59.99673 * 21 20 19 41 41 H 1.08997 * 109.47099 * 299.99460 * 22 21 20 42 42 H 1.08997 * 109.47103 * 59.99942 * 22 21 20 43 43 H 0.97001 * 120.00096 * 359.97438 * 23 22 21 44 44 H 0.96997 * 119.99347 * 359.97438 * 25 24 23 45 45 H 0.96993 * 119.99609 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0018 11 6 2.6798 -4.1700 1.2664 12 6 3.9233 -3.4379 1.7009 13 6 3.9588 -2.3377 2.4740 14 6 5.3204 -1.9905 2.6300 15 6 6.0356 -2.8996 1.9435 16 8 5.1844 -3.7766 1.3865 17 6 2.6400 -4.1244 -1.1694 18 8 2.2448 -3.6633 -2.2193 19 6 3.6197 -5.2696 -1.1707 20 6 3.9504 -5.6562 -2.6136 21 6 4.9456 -6.8184 -2.6149 22 6 5.2758 -7.2055 -4.0578 23 7 6.2282 -8.3187 -4.0590 24 6 6.6656 -8.8301 -5.2266 25 7 7.5422 -9.8539 -5.2278 26 8 6.2694 -8.3678 -6.2792 27 1 -0.4850 0.8401 -0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6246 -2.5571 0.8896 30 1 1.9070 -4.0565 2.0267 31 1 2.9081 -5.2278 1.1354 32 1 3.1101 -1.8196 2.8955 33 1 5.7113 -1.1555 3.1926 34 1 7.1120 -2.9227 1.8578 35 1 4.5326 -4.9672 -0.6576 36 1 3.1800 -6.1244 -0.6567 37 1 3.0376 -5.9585 -3.1271 38 1 4.3902 -4.8013 -3.1273 39 1 5.8582 -6.5158 -2.1015 40 1 4.5062 -7.6735 -2.1011 41 1 4.3629 -7.5083 -4.5707 42 1 5.7149 -6.3505 -4.5719 43 1 6.5445 -8.6872 -3.2193 44 1 7.8584 -10.2223 -4.3881 45 1 7.8566 -10.2221 -6.0682 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070871404.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:53 Heat of formation + Delta-G solvation = -93.973380 kcal Electronic energy + Delta-G solvation = -27168.869620 eV Core-core repulsion = 23186.567035 eV Total energy + Delta-G solvation = -3982.302585 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.30969 -40.84338 -40.64199 -37.20337 -36.73243 -35.01973 -34.77022 -34.04764 -33.72085 -31.45425 -30.53803 -28.96989 -26.66577 -25.80053 -24.07615 -22.53858 -22.32203 -21.93943 -21.53779 -19.92300 -19.15309 -18.76729 -18.31055 -18.10099 -17.71691 -17.11380 -17.01211 -16.55043 -16.38008 -16.12882 -15.70488 -15.63908 -15.19311 -15.05976 -14.55712 -14.32545 -14.07732 -13.75533 -13.63947 -13.47561 -13.41638 -13.17369 -12.96924 -12.72266 -12.64067 -12.51463 -12.40807 -12.23505 -12.00449 -11.70476 -11.52636 -11.49120 -10.73026 -10.68058 -10.61108 -10.57947 -9.95057 -9.63663 -9.21462 -8.20406 -6.30077 0.88790 1.31816 1.34903 1.45737 1.75175 1.89325 1.97803 2.18341 2.26485 2.35469 2.54408 3.10610 3.64625 3.78179 3.83993 3.92834 4.04480 4.16061 4.28079 4.35454 4.41296 4.48110 4.55047 4.59028 4.78309 4.84235 4.90135 5.03082 5.05266 5.09019 5.18625 5.27635 5.33902 5.36264 5.43477 5.52032 5.58570 5.72425 5.84217 5.93894 6.05818 6.10750 6.33891 6.70579 6.79830 7.15348 7.32631 7.49621 7.68171 8.87376 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013823 B = 0.002819 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.139241 B = 9930.486828 C =10883.630673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.010 3.990 3 Si 0.953 3.047 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.514 4.514 8 H 0.047 0.953 9 C 0.259 3.741 10 N -0.601 5.601 11 C 0.192 3.808 12 C -0.039 4.039 13 C -0.198 4.198 14 C -0.238 4.238 15 C -0.037 4.037 16 O -0.179 6.179 17 C 0.495 3.505 18 O -0.594 6.594 19 C -0.125 4.125 20 C -0.098 4.098 21 C -0.109 4.109 22 C 0.137 3.863 23 N -0.729 5.729 24 C 0.694 3.306 25 N -0.846 5.846 26 O -0.654 6.654 27 H 0.264 0.736 28 H -0.001 1.001 29 H 0.029 0.971 30 H 0.115 0.885 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.156 0.844 34 H 0.240 0.760 35 H 0.106 0.894 36 H 0.128 0.872 37 H 0.057 0.943 38 H 0.044 0.956 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.051 0.949 42 H 0.046 0.954 43 H 0.416 0.584 44 H 0.416 0.584 45 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.264 -20.450 5.443 27.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.189 4.189 3 Si 0.779 3.221 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.195 1.195 7 C -0.553 4.553 8 H 0.065 0.935 9 C 0.137 3.863 10 N -0.332 5.332 11 C 0.069 3.931 12 C -0.090 4.090 13 C -0.218 4.218 14 C -0.258 4.258 15 C -0.104 4.104 16 O -0.075 6.075 17 C 0.285 3.715 18 O -0.475 6.475 19 C -0.164 4.164 20 C -0.137 4.137 21 C -0.147 4.147 22 C 0.012 3.988 23 N -0.386 5.386 24 C 0.391 3.609 25 N -0.416 5.416 26 O -0.537 6.537 27 H 0.073 0.927 28 H 0.017 0.983 29 H 0.047 0.953 30 H 0.133 0.867 31 H 0.147 0.853 32 H 0.149 0.851 33 H 0.174 0.826 34 H 0.256 0.744 35 H 0.124 0.876 36 H 0.146 0.854 37 H 0.076 0.924 38 H 0.063 0.937 39 H 0.108 0.892 40 H 0.116 0.884 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.253 0.747 44 H 0.247 0.753 45 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 16.531 -19.862 3.973 26.145 hybrid contribution 0.203 1.551 0.267 1.587 sum 16.734 -18.311 4.239 25.165 Atomic orbital electron populations 1.70039 1.07216 1.27671 1.52009 1.25682 0.95614 1.02400 0.95190 0.85576 0.78845 0.79891 0.77816 1.19657 1.21146 1.19500 1.21564 0.92777 0.91596 1.49399 0.93486 1.18811 0.87769 0.83744 0.95940 1.48336 1.44432 1.34554 1.05864 1.20156 0.89230 0.97487 0.86196 1.22974 0.84674 0.99988 1.01394 1.21735 0.98124 0.98060 1.03872 1.22103 0.93231 1.03593 1.06824 1.24678 0.97020 0.90698 0.98052 1.83936 1.15547 1.47740 1.60290 1.21649 0.82036 0.85021 0.82792 1.90653 1.59950 1.63966 1.32937 1.21740 0.98527 0.96210 0.99957 1.21158 0.99530 0.98092 0.94935 1.21640 1.00060 0.98441 0.94510 1.21126 0.91561 0.87914 0.98211 1.44891 1.48804 1.37609 1.07327 1.16315 0.79853 0.80740 0.83969 1.42762 1.48402 1.36510 1.13902 1.90958 1.64283 1.65633 1.32810 0.92673 0.98276 0.95346 0.86707 0.85300 0.85097 0.82618 0.74361 0.87553 0.85444 0.92416 0.93689 0.89250 0.88363 0.93037 0.93579 0.74662 0.75320 0.74802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.12 13.29 21.45 0.28 -55.84 16 2 C 0.01 0.55 5.46 84.65 0.46 1.01 16 3 Si 0.95 45.95 29.54 68.60 2.03 47.97 16 4 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 5 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 6 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.51 -29.24 9.14 25.60 0.23 -29.00 16 8 H 0.05 2.74 7.65 -2.91 -0.02 2.72 16 9 C 0.26 13.55 5.20 85.63 0.45 14.00 16 10 N -0.60 -24.34 2.44 -830.50 -2.03 -26.37 16 11 C 0.19 5.54 5.78 85.63 0.50 6.04 16 12 C -0.04 -1.23 6.85 24.83 0.17 -1.06 16 13 C -0.20 -6.73 10.40 22.19 0.23 -6.50 16 14 C -0.24 -6.81 10.91 22.19 0.24 -6.57 16 15 C -0.04 -0.88 12.09 66.97 0.81 -0.07 16 16 O -0.18 -4.87 9.55 -2.58 -0.02 -4.89 16 17 C 0.49 19.85 7.67 87.66 0.67 20.53 16 18 O -0.59 -30.65 15.56 -3.05 -0.05 -30.70 16 19 C -0.12 -3.12 4.25 29.85 0.13 -3.00 16 20 C -0.10 -2.41 4.50 30.60 0.14 -2.27 16 21 C -0.11 -1.59 5.33 30.60 0.16 -1.42 16 22 C 0.14 2.65 5.67 86.38 0.49 3.14 16 23 N -0.73 -10.60 5.56 -478.53 -2.66 -13.26 16 24 C 0.69 13.85 8.84 179.06 1.58 15.43 16 25 N -0.85 -7.84 8.88 -184.74 -1.64 -9.48 16 26 O -0.65 -21.09 17.18 -4.01 -0.07 -21.16 16 27 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 28 H 0.00 -0.05 7.42 -2.38 -0.02 -0.07 16 29 H 0.03 1.49 7.89 -2.39 -0.02 1.47 16 30 H 0.11 3.09 7.89 -2.39 -0.02 3.07 16 31 H 0.13 2.48 6.44 -2.39 -0.02 2.46 16 32 H 0.13 4.82 8.06 -2.91 -0.02 4.80 16 33 H 0.16 3.81 8.06 -2.91 -0.02 3.78 16 34 H 0.24 3.23 8.06 -2.91 -0.02 3.21 16 35 H 0.11 2.44 6.93 -2.38 -0.02 2.43 16 36 H 0.13 2.16 7.40 -2.39 -0.02 2.14 16 37 H 0.06 1.58 8.10 -2.38 -0.02 1.57 16 38 H 0.04 1.35 8.10 -2.39 -0.02 1.33 16 39 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.42 2.58 8.49 -92.71 -0.79 1.79 16 44 H 0.42 0.60 8.84 -92.71 -0.82 -0.22 16 45 H 0.42 3.39 8.93 -92.71 -0.83 2.56 16 Total: -1.00 -89.52 384.56 0.71 -88.81 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -1.40 Total: 14.64 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: 6.26 Total: 10.27 kcal Atomic # 7 Polarization: -98.90 SS G_CDS: -6.04 Total: -104.94 kcal Atomic # 8 Polarization: -56.61 SS G_CDS: -0.14 Total: -56.75 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.97 kcal Total: -89.52 0.71 -88.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070871404.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.165 kcal (2) G-P(sol) polarization free energy of solvation -89.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds