Wall clock time and date at job start Tue Mar 31 2020 14:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35809 * 117.00308 * 2 1 4 4 C 1.39084 * 119.87888 * 0.02562 * 3 2 1 5 5 C 1.37595 * 120.28069 * 179.97438 * 4 3 2 6 6 C 1.39888 * 120.03674 * 0.02562 * 5 4 3 7 7 C 1.47314 * 120.11945 * 180.02562 * 6 5 4 8 8 O 1.21611 * 119.99767 * 179.97438 * 7 6 5 9 9 N 1.34775 * 119.99713 * 0.02562 * 7 6 5 10 10 C 1.46507 * 119.99609 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.46972 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47238 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.47148 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00213 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99878 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99989 * 0.02562 * 15 13 12 17 17 Si 1.86808 * 120.00126 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46683 * 90.00050 * 17 15 13 19 19 H 1.48500 * 109.47114 * 210.00216 * 17 15 13 20 20 H 1.48500 * 109.47093 * 330.00124 * 17 15 13 21 21 C 1.40215 * 119.75866 * 0.02562 * 6 5 4 22 22 O 1.35759 * 120.13480 * 180.02562 * 21 6 5 23 23 C 1.42902 * 117.00423 * 89.99944 * 22 21 6 24 24 C 1.38805 * 119.72190 * 359.72543 * 21 6 5 25 25 O 1.36105 * 120.01955 * 180.29511 * 24 21 6 26 26 C 1.42900 * 117.00114 * 270.21402 * 25 24 21 27 27 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46938 * 59.99564 * 1 2 3 29 29 H 1.09004 * 109.46926 * 299.99685 * 1 2 3 30 30 H 1.07997 * 119.85697 * 359.97367 * 4 3 2 31 31 H 1.08002 * 119.98039 * 180.02562 * 5 4 3 32 32 H 0.96997 * 120.00386 * 359.97438 * 9 7 6 33 33 H 1.08998 * 109.46538 * 299.99432 * 10 9 7 34 34 H 1.08994 * 109.47186 * 59.99871 * 10 9 7 35 35 H 1.09001 * 109.47159 * 299.99902 * 11 10 9 36 36 H 1.09005 * 109.47225 * 59.99451 * 11 10 9 37 37 H 1.08992 * 109.47406 * 300.00214 * 12 11 10 38 38 H 1.09007 * 109.46528 * 60.00190 * 12 11 10 39 39 H 0.97000 * 119.99799 * 179.97438 * 16 15 13 40 40 H 1.09005 * 109.46897 * 59.99639 * 23 22 21 41 41 H 1.08996 * 109.47430 * 179.97438 * 23 22 21 42 42 H 1.08998 * 109.46660 * 300.00369 * 23 22 21 43 43 H 1.09003 * 109.47406 * 59.99693 * 26 25 24 44 44 H 1.08996 * 109.47315 * 179.97438 * 26 25 24 45 45 H 1.09003 * 109.46998 * 300.00366 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2100 0.0000 4 6 1.2857 2.3749 0.0005 5 6 1.9019 3.6052 0.0011 6 6 3.2982 3.6891 0.0005 7 6 3.9598 5.0053 0.0017 8 8 5.1739 5.0756 0.0017 9 7 3.2195 6.1315 0.0038 10 6 3.8774 7.4405 0.0055 11 6 2.8176 8.5440 0.0070 12 6 3.5046 9.9110 0.0095 13 6 2.4607 10.9979 0.0104 14 1 1.4121 10.7394 0.0097 15 6 2.8443 12.3222 0.0120 16 7 4.1212 12.6369 0.0122 17 14 1.5503 13.6695 0.0124 18 1 1.2064 14.0250 1.4126 19 1 2.0824 14.8671 -0.6861 20 1 0.3334 13.1873 -0.6890 21 6 4.0659 2.5157 -0.0011 22 8 5.4215 2.5882 -0.0011 23 6 6.0696 2.6211 1.2721 24 6 3.4339 1.2799 0.0036 25 8 4.1731 0.1371 0.0081 26 6 4.5297 -0.4100 -1.2629 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8901 30 1 0.2075 2.3135 0.0005 31 1 1.3071 4.5067 0.0019 32 1 2.2511 6.0754 0.0041 33 1 4.5000 7.5330 0.8954 34 1 4.4992 7.5358 -0.8846 35 1 2.1952 8.4513 -0.8830 36 1 2.1953 8.4489 0.8969 37 1 4.1266 10.0035 0.8996 38 1 4.1271 10.0063 -0.8803 39 1 4.3911 13.5686 0.0130 40 1 5.8246 1.7160 1.8280 41 1 7.1486 2.6785 1.1293 42 1 5.7296 3.4934 1.8303 43 1 5.1197 0.3183 -1.8195 44 1 5.1165 -1.3168 -1.1166 45 1 3.6251 -0.6485 -1.8225 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070940566.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:36 Heat of formation + Delta-G solvation = -124.724219 kcal Electronic energy + Delta-G solvation = -27120.200032 eV Core-core repulsion = 23104.271239 eV Total energy + Delta-G solvation = -4015.928793 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.21084 -39.62614 -38.80832 -37.66968 -36.54763 -35.34299 -33.31935 -31.51275 -30.48738 -30.24209 -28.04730 -27.39481 -26.60889 -26.47079 -23.96521 -22.92442 -22.20102 -20.75871 -20.19092 -19.00641 -17.93011 -17.55069 -16.86478 -16.52608 -16.42032 -16.20999 -15.71164 -15.37245 -15.28335 -15.12700 -14.94061 -14.65230 -14.45794 -13.87548 -13.80025 -13.41113 -13.21238 -12.91673 -12.68843 -12.29490 -12.14614 -11.85298 -11.84548 -11.76118 -11.54130 -11.25729 -10.91149 -10.73762 -10.61000 -10.57430 -10.04552 -9.87363 -9.73181 -9.36101 -9.12370 -9.02974 -8.82270 -8.52730 -8.38032 -6.02576 -4.05757 0.51433 0.65816 2.53978 2.69637 3.23050 3.29943 3.36397 3.38898 3.44107 3.51031 3.88784 4.35531 4.43445 4.51654 4.67779 4.69852 4.71923 4.90336 4.94544 5.04810 5.11075 5.16890 5.30733 5.33197 5.40376 5.44608 5.56821 5.66885 5.69877 5.77379 5.77878 5.85543 5.93915 6.16029 6.47867 6.59278 6.64575 6.82919 6.99398 7.07714 7.44603 7.62766 7.70635 7.75475 7.96159 8.36162 8.41408 9.00917 9.58428 11.08707 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.020673 B = 0.002308 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.073762 B =12128.221789 C =13277.556000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.302 6.302 3 C 0.145 3.855 4 C -0.212 4.212 5 C -0.036 4.036 6 C -0.181 4.181 7 C 0.554 3.446 8 O -0.523 6.523 9 N -0.723 5.723 10 C 0.118 3.882 11 C -0.121 4.121 12 C 0.024 3.976 13 C -0.522 4.522 14 H 0.055 0.945 15 C 0.057 3.943 16 N -0.893 5.893 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.179 3.821 22 O -0.312 6.312 23 C 0.054 3.946 24 C 0.030 3.970 25 O -0.317 6.317 26 C 0.036 3.964 27 H 0.103 0.897 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.143 0.857 31 H 0.140 0.860 32 H 0.395 0.605 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.261 0.739 40 H 0.044 0.956 41 H 0.095 0.905 42 H 0.051 0.949 43 H 0.050 0.950 44 H 0.093 0.907 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.361 -28.680 0.093 29.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.214 6.214 3 C 0.098 3.902 4 C -0.231 4.231 5 C -0.055 4.055 6 C -0.185 4.185 7 C 0.340 3.660 8 O -0.400 6.400 9 N -0.375 5.375 10 C -0.004 4.004 11 C -0.159 4.159 12 C -0.014 4.014 13 C -0.561 4.561 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.532 5.532 17 Si 0.721 3.279 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C 0.133 3.867 22 O -0.228 6.228 23 C -0.040 4.040 24 C -0.015 4.015 25 O -0.233 6.233 26 C -0.058 4.058 27 H 0.121 0.879 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.160 0.840 31 H 0.158 0.842 32 H 0.230 0.770 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.037 0.963 38 H 0.038 0.962 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.113 0.887 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.112 0.888 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.063 -28.745 0.092 29.187 hybrid contribution -1.625 1.034 -0.071 1.927 sum -6.688 -27.711 0.021 28.506 Atomic orbital electron populations 1.23191 0.77881 1.04414 1.01796 1.86137 1.21675 1.25942 1.87663 1.19448 0.91093 0.85126 0.94532 1.21117 1.00590 0.91309 1.10074 1.21097 0.92763 0.97888 0.93707 1.20340 0.93647 0.93835 1.10678 1.17833 0.87109 0.83488 0.77521 1.90817 1.13041 1.87169 1.48940 1.46128 1.10037 1.06384 1.74947 1.21656 0.96524 0.80111 1.02131 1.21894 0.97167 0.95990 1.00842 1.19027 0.95917 0.88750 0.97692 1.21196 0.92943 0.90969 1.50966 0.92664 1.25033 0.95270 0.98892 0.95288 1.69964 1.14712 1.18043 1.50518 0.86584 0.81718 0.81531 0.78089 1.20660 1.21199 1.19910 1.18721 0.84507 0.89353 0.94148 1.85906 1.13327 1.93592 1.29986 1.22888 0.97632 1.00277 0.83167 1.18153 0.86749 0.86361 1.10257 1.86089 1.70405 1.37311 1.29501 1.23021 0.99621 0.98648 0.84517 0.87865 0.92229 0.92135 0.83976 0.84227 0.77026 0.91656 0.91607 0.92719 0.92742 0.96258 0.96236 0.92912 0.93703 0.88651 0.93070 0.93111 0.88844 0.93688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 101.05 0.99 1.10 16 2 O -0.30 -2.82 10.26 -34.02 -0.35 -3.17 16 3 C 0.15 1.53 6.70 -38.98 -0.26 1.26 16 4 C -0.21 -1.82 9.01 -39.50 -0.36 -2.18 16 5 C -0.04 -0.35 9.52 -39.20 -0.37 -0.72 16 6 C -0.18 -2.40 5.89 -104.85 -0.62 -3.01 16 7 C 0.55 8.81 7.76 -12.57 -0.10 8.71 16 8 O -0.52 -10.08 14.00 -16.67 -0.23 -10.32 16 9 N -0.72 -10.57 5.51 -61.42 -0.34 -10.91 16 10 C 0.12 2.08 5.67 -4.04 -0.02 2.06 16 11 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 12 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 13 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 14 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.89 -26.76 13.29 55.43 0.74 -26.03 16 17 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 21 C 0.18 2.49 5.74 -38.63 -0.22 2.27 16 22 O -0.31 -4.70 8.61 -47.65 -0.41 -5.11 16 23 C 0.05 0.67 10.49 101.05 1.06 1.73 16 24 C 0.03 0.38 5.74 -39.09 -0.22 0.15 16 25 O -0.32 -3.93 9.97 -45.51 -0.45 -4.39 16 26 C 0.04 0.34 11.13 101.05 1.13 1.46 16 27 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.22 7.65 -51.93 -0.40 -0.17 16 29 H 0.06 0.24 7.65 -51.93 -0.40 -0.16 16 30 H 0.14 0.78 6.27 -52.49 -0.33 0.45 16 31 H 0.14 1.00 6.39 -52.49 -0.34 0.67 16 32 H 0.40 4.54 6.49 -40.82 -0.26 4.28 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.05 0.68 7.50 -51.93 -0.39 0.29 16 43 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 380.45 15.07 5.73 5.73 Total: -1.00 -34.93 380.45 -6.75 -41.68 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -6.73 Total: -1.37 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: 0.31 Total: -2.48 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.40 Total: -36.94 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -1.45 Total: -22.99 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.93 -6.75 -41.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940566.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.044 kcal (2) G-P(sol) polarization free energy of solvation -34.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds