Wall clock time and date at job start Tue Mar 31 2020 14:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35809 * 117.00308 * 2 1 4 4 C 1.39084 * 119.87888 * 0.02562 * 3 2 1 5 5 C 1.37595 * 120.28069 * 179.97438 * 4 3 2 6 6 C 1.39888 * 120.03674 * 0.02562 * 5 4 3 7 7 C 1.47314 * 120.11945 * 180.02562 * 6 5 4 8 8 O 1.21611 * 119.99767 * 179.97438 * 7 6 5 9 9 N 1.34775 * 119.99713 * 0.02562 * 7 6 5 10 10 C 1.46507 * 119.99609 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.46972 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47238 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.47148 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00213 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99878 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99989 * 0.02562 * 15 13 12 17 17 Si 1.86808 * 120.00126 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46683 * 90.00050 * 17 15 13 19 19 H 1.48500 * 109.47114 * 210.00216 * 17 15 13 20 20 H 1.48500 * 109.47093 * 330.00124 * 17 15 13 21 21 C 1.40215 * 119.75866 * 0.02562 * 6 5 4 22 22 O 1.35759 * 120.13480 * 180.02562 * 21 6 5 23 23 C 1.42902 * 117.00423 * 89.99944 * 22 21 6 24 24 C 1.38805 * 119.72190 * 359.72543 * 21 6 5 25 25 O 1.36105 * 120.01955 * 180.29511 * 24 21 6 26 26 C 1.42900 * 117.00114 * 270.21402 * 25 24 21 27 27 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46938 * 59.99564 * 1 2 3 29 29 H 1.09004 * 109.46926 * 299.99685 * 1 2 3 30 30 H 1.07997 * 119.85697 * 359.97367 * 4 3 2 31 31 H 1.08002 * 119.98039 * 180.02562 * 5 4 3 32 32 H 0.96997 * 120.00386 * 359.97438 * 9 7 6 33 33 H 1.08998 * 109.46538 * 299.99432 * 10 9 7 34 34 H 1.08994 * 109.47186 * 59.99871 * 10 9 7 35 35 H 1.09001 * 109.47159 * 299.99902 * 11 10 9 36 36 H 1.09005 * 109.47225 * 59.99451 * 11 10 9 37 37 H 1.08992 * 109.47406 * 300.00214 * 12 11 10 38 38 H 1.09007 * 109.46528 * 60.00190 * 12 11 10 39 39 H 0.97000 * 119.99799 * 179.97438 * 16 15 13 40 40 H 1.09005 * 109.46897 * 59.99639 * 23 22 21 41 41 H 1.08996 * 109.47430 * 179.97438 * 23 22 21 42 42 H 1.08998 * 109.46660 * 300.00369 * 23 22 21 43 43 H 1.09003 * 109.47406 * 59.99693 * 26 25 24 44 44 H 1.08996 * 109.47315 * 179.97438 * 26 25 24 45 45 H 1.09003 * 109.46998 * 300.00366 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2100 0.0000 4 6 1.2857 2.3749 0.0005 5 6 1.9019 3.6052 0.0011 6 6 3.2982 3.6891 0.0005 7 6 3.9598 5.0053 0.0017 8 8 5.1739 5.0756 0.0017 9 7 3.2195 6.1315 0.0038 10 6 3.8774 7.4405 0.0055 11 6 2.8176 8.5440 0.0070 12 6 3.5046 9.9110 0.0095 13 6 2.4607 10.9979 0.0104 14 1 1.4121 10.7394 0.0097 15 6 2.8443 12.3222 0.0120 16 7 4.1212 12.6369 0.0122 17 14 1.5503 13.6695 0.0124 18 1 1.2064 14.0250 1.4126 19 1 2.0824 14.8671 -0.6861 20 1 0.3334 13.1873 -0.6890 21 6 4.0659 2.5157 -0.0011 22 8 5.4215 2.5882 -0.0011 23 6 6.0696 2.6211 1.2721 24 6 3.4339 1.2799 0.0036 25 8 4.1731 0.1371 0.0081 26 6 4.5297 -0.4100 -1.2629 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8901 30 1 0.2075 2.3135 0.0005 31 1 1.3071 4.5067 0.0019 32 1 2.2511 6.0754 0.0041 33 1 4.5000 7.5330 0.8954 34 1 4.4992 7.5358 -0.8846 35 1 2.1952 8.4513 -0.8830 36 1 2.1953 8.4489 0.8969 37 1 4.1266 10.0035 0.8996 38 1 4.1271 10.0063 -0.8803 39 1 4.3911 13.5686 0.0130 40 1 5.8246 1.7160 1.8280 41 1 7.1486 2.6785 1.1293 42 1 5.7296 3.4934 1.8303 43 1 5.1197 0.3183 -1.8195 44 1 5.1165 -1.3168 -1.1166 45 1 3.6251 -0.6485 -1.8225 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070940566.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:35 Heat of formation + Delta-G solvation = -147.742226 kcal Electronic energy + Delta-G solvation = -27121.198167 eV Core-core repulsion = 23104.271239 eV Total energy + Delta-G solvation = -4016.926928 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.07909 -40.64529 -39.73694 -38.59870 -37.40066 -36.90158 -35.17502 -33.15705 -31.42853 -31.17983 -28.92224 -28.24845 -28.04468 -27.32660 -25.37005 -24.18481 -23.14789 -22.30982 -21.48846 -19.85555 -18.88818 -18.58573 -18.33128 -17.66991 -17.29469 -17.27108 -16.72598 -16.66594 -16.38490 -16.35124 -15.97785 -15.71703 -15.55255 -15.26837 -15.05132 -14.25956 -14.21431 -13.95961 -13.77651 -13.66668 -13.58654 -13.26707 -12.80498 -12.74258 -12.65410 -12.53700 -12.37561 -12.20638 -11.98497 -11.66079 -11.58961 -11.45284 -11.24177 -11.05716 -10.62960 -10.54465 -10.13891 -9.85988 -9.36996 -8.18424 -6.29924 -0.38461 -0.14459 1.42618 1.44071 1.54927 1.64913 1.98513 2.08672 2.40672 2.44204 2.67734 2.97610 3.15478 3.66538 3.72308 3.83893 4.09957 4.10266 4.18120 4.22801 4.35173 4.36803 4.41590 4.43009 4.43711 4.45811 4.55982 4.70988 4.74617 4.76818 4.83013 4.90599 4.95529 5.01992 5.03850 5.18112 5.20660 5.42123 5.53682 5.71962 5.85357 5.97214 6.23063 6.24726 6.55600 6.56216 6.87905 7.22174 7.39738 8.93758 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.020673 B = 0.002308 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.073762 B =12128.221789 C =13277.556000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.317 6.317 3 C 0.151 3.849 4 C -0.198 4.198 5 C -0.023 4.023 6 C -0.203 4.203 7 C 0.553 3.447 8 O -0.566 6.566 9 N -0.710 5.710 10 C 0.132 3.868 11 C -0.101 4.101 12 C 0.023 3.977 13 C -0.539 4.539 14 H 0.068 0.932 15 C -0.005 4.005 16 N -0.936 5.936 17 Si 0.968 3.032 18 H -0.273 1.273 19 H -0.286 1.286 20 H -0.259 1.259 21 C 0.157 3.843 22 O -0.336 6.336 23 C 0.056 3.944 24 C 0.012 3.988 25 O -0.334 6.334 26 C 0.034 3.966 27 H 0.121 0.879 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.183 0.817 31 H 0.170 0.830 32 H 0.414 0.586 33 H 0.050 0.950 34 H 0.048 0.952 35 H 0.070 0.930 36 H 0.071 0.929 37 H -0.009 1.009 38 H -0.009 1.009 39 H 0.263 0.737 40 H 0.056 0.944 41 H 0.105 0.895 42 H 0.035 0.965 43 H 0.039 0.961 44 H 0.114 0.886 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.271 -29.824 0.056 31.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.229 6.229 3 C 0.103 3.897 4 C -0.216 4.216 5 C -0.042 4.042 6 C -0.207 4.207 7 C 0.341 3.659 8 O -0.447 6.447 9 N -0.363 5.363 10 C 0.008 3.992 11 C -0.139 4.139 12 C -0.015 4.015 13 C -0.577 4.577 14 H 0.087 0.913 15 C -0.203 4.203 16 N -0.576 5.576 17 Si 0.792 3.208 18 H -0.198 1.198 19 H -0.212 1.212 20 H -0.183 1.183 21 C 0.111 3.889 22 O -0.253 6.253 23 C -0.038 4.038 24 C -0.033 4.033 25 O -0.251 6.251 26 C -0.060 4.060 27 H 0.139 0.861 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.200 0.800 31 H 0.187 0.813 32 H 0.252 0.748 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.010 0.990 38 H 0.009 0.991 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.123 0.877 42 H 0.053 0.947 43 H 0.058 0.942 44 H 0.133 0.867 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.033 -29.921 0.055 31.254 hybrid contribution -0.453 1.250 -0.066 1.331 sum -9.486 -28.670 -0.011 30.199 Atomic orbital electron populations 1.23572 0.75351 1.06245 1.03246 1.86133 1.24253 1.25445 1.87107 1.19547 0.90532 0.86357 0.93230 1.21501 1.02335 0.89866 1.07915 1.21407 0.91193 0.99700 0.91894 1.20176 0.95167 0.91831 1.13562 1.18282 0.86712 0.84537 0.76357 1.90791 1.15074 1.87837 1.50949 1.45831 1.10888 1.04890 1.74649 1.21242 0.95869 0.81349 1.00703 1.21600 0.97059 0.92888 1.02331 1.18946 0.95377 0.92140 0.95015 1.21683 0.93933 0.91782 1.50307 0.91344 1.26044 0.97493 1.01870 0.94847 1.70118 1.17109 1.18651 1.51771 0.85410 0.79048 0.77900 0.78446 1.19820 1.21198 1.18282 1.18980 0.84068 0.90351 0.95478 1.85853 1.14595 1.93803 1.31022 1.22917 0.98106 1.00039 0.82695 1.18266 0.87874 0.85868 1.11298 1.86047 1.70770 1.37319 1.30942 1.23155 1.00116 0.98993 0.83687 0.86118 0.90596 0.90687 0.79983 0.81259 0.74839 0.93143 0.93327 0.91156 0.91061 0.99015 0.99082 0.92861 0.92514 0.87693 0.94653 0.94210 0.86733 0.92893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.81 113.37 1.11 1.17 16 2 O -0.32 -5.06 10.26 -77.19 -0.79 -5.85 16 3 C 0.15 2.83 6.70 22.66 0.15 2.98 16 4 C -0.20 -2.65 9.01 22.32 0.20 -2.44 16 5 C -0.02 -0.39 9.52 22.52 0.21 -0.17 16 6 C -0.20 -5.26 5.89 -20.01 -0.12 -5.38 16 7 C 0.55 17.72 7.76 86.63 0.67 18.39 16 8 O -0.57 -22.90 14.00 16.91 0.24 -22.67 16 9 N -0.71 -20.10 5.51 -466.48 -2.57 -22.67 16 10 C 0.13 4.71 5.67 86.38 0.49 5.20 16 11 C -0.10 -3.81 5.27 30.59 0.16 -3.65 16 12 C 0.02 1.19 4.97 29.85 0.15 1.33 16 13 C -0.54 -29.79 9.11 25.60 0.23 -29.55 16 14 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 15 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 16 N -0.94 -57.25 13.29 21.45 0.28 -56.97 16 17 Si 0.97 43.46 29.54 68.60 2.03 45.49 16 18 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 19 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 20 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 21 C 0.16 4.43 5.74 22.89 0.13 4.56 16 22 O -0.34 -10.66 8.61 -63.44 -0.55 -11.20 16 23 C 0.06 1.48 10.49 113.37 1.19 2.67 16 24 C 0.01 0.30 5.74 22.59 0.13 0.43 16 25 O -0.33 -8.25 9.97 -70.42 -0.70 -8.96 16 26 C 0.03 0.63 11.13 113.37 1.26 1.89 16 27 H 0.12 0.28 8.14 -2.39 -0.02 0.26 16 28 H 0.08 0.22 7.65 -2.39 -0.02 0.20 16 29 H 0.07 0.24 7.65 -2.38 -0.02 0.22 16 30 H 0.18 0.95 6.27 -2.91 -0.02 0.93 16 31 H 0.17 1.68 6.39 -2.91 -0.02 1.66 16 32 H 0.41 8.40 6.49 -92.71 -0.60 7.80 16 33 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.07 2.45 8.14 -2.39 -0.02 2.44 16 36 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 37 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 38 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16 39 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 40 H 0.06 1.30 8.14 -2.38 -0.02 1.29 16 41 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 42 H 0.03 1.02 7.50 -2.39 -0.02 1.00 16 43 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -78.98 380.45 4.78 -74.20 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: 0.40 Total: 11.01 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: 6.44 Total: -2.40 kcal Atomic # 7 Polarization: -77.35 SS G_CDS: -2.28 Total: -79.63 kcal Atomic # 8 Polarization: -46.87 SS G_CDS: -1.80 Total: -48.67 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -78.98 4.78 -74.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940566.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.542 kcal (2) G-P(sol) polarization free energy of solvation -78.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds