Wall clock time and date at job start Tue Mar 31 2020 14:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42903 * 113.99876 * 2 1 4 4 C 1.52997 * 109.46988 * 180.02562 * 3 2 1 5 5 N 1.46907 * 109.47040 * 64.00209 * 4 3 2 6 6 C 1.46902 * 110.99845 * 71.97594 * 5 4 3 7 7 C 1.50705 * 109.47134 * 61.19506 * 6 5 4 8 8 H 1.07998 * 119.99287 * 0.97875 * 7 6 5 9 9 C 1.37869 * 120.00091 * 180.97475 * 7 6 5 10 10 N 1.31519 * 119.99922 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00237 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.46938 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.47061 * 120.00260 * 11 9 7 14 14 H 1.48500 * 109.47612 * 240.00580 * 11 9 7 15 15 C 1.46901 * 111.00297 * 195.93122 * 5 4 3 16 16 C 1.52997 * 109.47091 * 162.02524 * 15 5 4 17 17 O 1.42906 * 109.47066 * 68.56838 * 16 15 5 18 18 C 1.35638 * 116.99762 * 179.97438 * 17 16 15 19 19 C 1.38710 * 120.15621 * 0.02562 * 18 17 16 20 20 C 1.38052 * 120.08781 * 180.02562 * 19 18 17 21 21 C 1.38570 * 120.40264 * 359.95077 * 20 19 18 22 22 C 1.37764 * 120.30969 * 0.02562 * 21 20 19 23 23 C 1.39769 * 119.90206 * 0.02562 * 22 21 20 24 24 C 1.47393 * 120.19607 * 179.97438 * 23 22 21 25 25 O 1.21512 * 119.99760 * 179.97438 * 24 23 22 26 26 O 1.34748 * 120.00338 * 0.02562 * 24 23 22 27 27 H 1.08999 * 109.47510 * 59.99160 * 1 2 3 28 28 H 1.08995 * 109.47151 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46567 * 299.99727 * 1 2 3 30 30 H 1.08995 * 109.46998 * 60.00713 * 3 2 1 31 31 H 1.08998 * 109.47234 * 300.00509 * 3 2 1 32 32 H 1.09000 * 109.47212 * 304.00424 * 4 3 2 33 33 H 1.08997 * 109.47160 * 183.99786 * 4 3 2 34 34 H 1.09000 * 109.47243 * 181.19274 * 6 5 4 35 35 H 1.09000 * 109.47494 * 301.19637 * 6 5 4 36 36 H 0.96996 * 119.99888 * 180.02562 * 10 9 7 37 37 H 1.08999 * 109.46892 * 42.02577 * 15 5 4 38 38 H 1.09000 * 109.47151 * 282.02609 * 15 5 4 39 39 H 1.08994 * 109.47599 * 308.57105 * 16 15 5 40 40 H 1.08995 * 109.47080 * 188.56759 * 16 15 5 41 41 H 1.07993 * 119.95579 * 0.02562 * 19 18 17 42 42 H 1.07995 * 119.79434 * 179.97438 * 20 19 18 43 43 H 1.07999 * 119.84481 * 180.02562 * 21 20 19 44 44 H 1.08000 * 120.04383 * 179.74354 * 22 21 20 45 45 H 0.96701 * 117.00694 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9752 0.5410 -1.2458 6 6 3.8213 1.4488 -2.3905 7 6 4.6754 2.6724 -2.1797 8 1 5.2850 2.7589 -1.2924 9 6 4.6788 3.6811 -3.1195 10 7 3.9361 3.5757 -4.1999 11 14 5.7370 5.1980 -2.8579 12 1 6.4719 5.0733 -1.5736 13 1 6.7089 5.3220 -3.9738 14 1 4.8719 6.4044 -2.8186 15 6 5.3609 0.0668 -1.1326 16 6 5.6384 -0.9639 -2.2286 17 8 5.6405 -0.3160 -3.5024 18 6 5.8738 -1.0942 -4.5886 19 6 6.0962 -2.4548 -4.4363 20 6 6.3341 -3.2453 -5.5427 21 6 6.3516 -2.6887 -6.8116 22 6 6.1323 -1.3393 -6.9820 23 6 5.8913 -0.5268 -5.8706 24 6 5.6563 0.9177 -6.0453 25 8 5.4467 1.6207 -5.0766 26 8 5.6729 1.4587 -7.2793 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8901 30 1 1.6887 1.8463 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8526 0.5829 0.8510 33 1 3.9786 2.1779 0.0710 34 1 4.1341 0.9401 -3.3023 35 1 2.7765 1.7463 -2.4805 36 1 3.9388 4.2852 -4.8613 37 1 5.5088 -0.3930 -0.1555 38 1 6.0435 0.9092 -1.2448 39 1 4.8631 -1.7298 -2.2119 40 1 6.6099 -1.4266 -2.0547 41 1 6.0834 -2.8963 -3.4508 42 1 6.5071 -4.3041 -5.4186 43 1 6.5382 -3.3156 -7.6710 44 1 6.1510 -0.9093 -7.9725 45 1 5.5133 2.4102 -7.3439 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071226603.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:33 Heat of formation + Delta-G solvation = -120.394945 kcal Electronic energy + Delta-G solvation = -29037.863057 eV Core-core repulsion = 25022.121996 eV Total energy + Delta-G solvation = -4015.741061 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.11862 -38.58473 -37.76347 -37.08098 -35.80156 -34.96117 -32.16663 -31.24242 -30.57434 -29.31465 -28.09170 -26.15418 -25.31874 -24.06790 -23.30998 -22.43483 -21.05868 -20.61607 -19.36167 -17.94728 -17.04253 -16.34264 -16.24445 -15.88733 -15.85678 -15.26347 -15.15362 -14.74498 -14.54562 -14.46381 -14.24449 -14.11594 -13.67615 -13.45077 -13.04105 -12.49222 -12.38753 -12.22175 -11.85723 -11.67681 -11.57768 -11.35737 -11.15807 -11.02959 -10.80147 -10.71642 -10.60405 -10.47838 -10.38649 -10.19112 -9.73736 -9.59751 -9.39103 -9.27260 -9.02053 -8.83439 -8.05479 -7.83355 -6.97664 -5.69531 -3.71122 1.12784 1.64710 3.34302 3.39465 3.46633 3.49393 3.67115 3.76914 4.20096 4.39467 4.64048 4.93540 5.00045 5.03776 5.27117 5.40948 5.57562 5.61663 5.64724 5.68351 5.69679 5.79055 5.82268 5.88336 5.91893 5.94097 5.97205 6.11324 6.18598 6.28818 6.41943 6.54624 6.57805 6.61605 6.67486 6.78252 6.93228 7.42484 7.50212 7.74288 7.88147 7.91792 8.25208 8.29473 8.57253 8.59633 8.95227 9.32375 9.90121 11.36624 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.009407 B = 0.005788 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2975.800671 B = 4836.567169 C = 6758.631245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.378 6.378 3 C 0.071 3.929 4 C 0.062 3.938 5 N -0.534 5.534 6 C 0.179 3.821 7 C -0.539 4.539 8 H 0.045 0.955 9 C 0.088 3.912 10 N -0.861 5.861 11 Si 0.871 3.129 12 H -0.280 1.280 13 H -0.289 1.289 14 H -0.290 1.290 15 C 0.059 3.941 16 C 0.063 3.937 17 O -0.246 6.246 18 C 0.194 3.806 19 C -0.229 4.229 20 C -0.054 4.054 21 C -0.187 4.187 22 C -0.033 4.033 23 C -0.152 4.152 24 C 0.472 3.528 25 O -0.391 6.391 26 O -0.537 6.537 27 H 0.037 0.963 28 H 0.076 0.924 29 H 0.030 0.970 30 H 0.036 0.964 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.016 0.984 36 H 0.249 0.751 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.053 0.947 41 H 0.133 0.867 42 H 0.123 0.877 43 H 0.123 0.877 44 H 0.136 0.864 45 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.836 -11.549 -0.887 11.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.296 6.296 3 C -0.005 4.005 4 C -0.067 4.067 5 N -0.258 5.258 6 C 0.055 3.945 7 C -0.578 4.578 8 H 0.063 0.937 9 C -0.116 4.116 10 N -0.499 5.499 11 Si 0.701 3.299 12 H -0.205 1.205 13 H -0.215 1.215 14 H -0.217 1.217 15 C -0.070 4.070 16 C -0.012 4.012 17 O -0.156 6.156 18 C 0.144 3.856 19 C -0.248 4.248 20 C -0.072 4.072 21 C -0.206 4.206 22 C -0.051 4.051 23 C -0.154 4.154 24 C 0.310 3.690 25 O -0.270 6.270 26 O -0.351 6.351 27 H 0.055 0.945 28 H 0.095 0.905 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.034 0.966 36 H 0.059 0.941 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.151 0.849 42 H 0.141 0.859 43 H 0.141 0.859 44 H 0.154 0.846 45 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 1.548 -12.015 -0.739 12.137 hybrid contribution 0.830 2.320 0.189 2.471 sum 2.378 -9.695 -0.550 9.998 Atomic orbital electron populations 1.22628 0.82879 1.01676 0.99270 1.87956 1.17931 1.28544 1.95214 1.22586 0.94492 0.84000 0.99459 1.21952 0.92697 0.99031 0.92990 1.62610 1.18131 1.40642 1.04444 1.20113 0.95847 0.89493 0.89096 1.21416 1.27025 1.03900 1.05442 0.93735 1.24634 0.94862 0.97134 0.94986 1.69947 1.39114 1.31760 1.09097 0.86913 0.80939 0.84384 0.77703 1.20485 1.21508 1.21709 1.21965 0.93052 0.97453 0.94494 1.22995 0.99520 0.96625 0.82082 1.86765 1.82121 1.34006 1.12683 1.19249 0.89151 0.89532 0.87647 1.21216 1.10532 0.92665 1.00371 1.21068 0.94669 0.99322 0.92166 1.20903 1.07298 0.95104 0.97273 1.21275 0.92911 0.93067 0.97836 1.18569 1.13704 0.91588 0.91510 1.20680 0.77955 0.88711 0.81659 1.91463 1.36932 1.60400 1.38214 1.84406 1.86146 1.30896 1.33639 0.94462 0.90516 0.95138 0.94571 0.92392 0.92789 0.91952 0.90960 0.96594 0.94070 0.91264 0.92156 0.91690 0.92853 0.84922 0.85882 0.85860 0.84581 0.73485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.38 -7.02 10.64 -35.23 -0.37 -7.39 16 3 C 0.07 1.34 6.08 37.16 0.23 1.57 16 4 C 0.06 1.23 5.19 -3.82 -0.02 1.21 16 5 N -0.53 -11.61 4.54 -236.07 -1.07 -12.68 16 6 C 0.18 4.66 4.70 -4.97 -0.02 4.64 16 7 C -0.54 -14.84 7.08 -34.44 -0.24 -15.08 16 8 H 0.04 1.24 6.04 -52.49 -0.32 0.92 16 9 C 0.09 2.47 4.65 -17.82 -0.08 2.39 16 10 N -0.86 -24.96 11.44 55.43 0.63 -24.33 16 11 Si 0.87 22.08 29.54 -169.99 -5.02 17.06 16 12 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 14 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 15 C 0.06 1.13 5.36 -3.82 -0.02 1.11 16 16 C 0.06 1.10 5.02 37.16 0.19 1.28 16 17 O -0.25 -5.11 5.55 -40.50 -0.22 -5.34 16 18 C 0.19 3.51 6.70 -38.67 -0.26 3.26 16 19 C -0.23 -3.28 9.03 -39.48 -0.36 -3.64 16 20 C -0.05 -0.65 10.03 -39.53 -0.40 -1.05 16 21 C -0.19 -2.28 10.02 -39.63 -0.40 -2.67 16 22 C -0.03 -0.47 9.61 -39.18 -0.38 -0.85 16 23 C -0.15 -2.75 5.88 -104.86 -0.62 -3.37 16 24 C 0.47 9.75 8.26 34.46 0.28 10.04 16 25 O -0.39 -9.84 11.61 -26.60 -0.31 -10.15 16 26 O -0.54 -9.22 12.68 -40.62 -0.52 -9.74 16 27 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 1.23 6.60 -51.93 -0.34 0.88 16 32 H 0.05 0.95 7.70 -51.93 -0.40 0.55 16 33 H 0.06 1.33 6.28 -51.93 -0.33 1.01 16 34 H 0.07 2.02 3.84 -51.93 -0.20 1.82 16 35 H 0.02 0.46 6.59 -51.93 -0.34 0.12 16 36 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 37 H 0.07 1.12 7.68 -51.93 -0.40 0.72 16 38 H 0.06 1.32 6.33 -51.93 -0.33 0.99 16 39 H 0.06 1.08 7.66 -51.93 -0.40 0.68 16 40 H 0.05 0.76 7.66 -51.93 -0.40 0.36 16 41 H 0.13 1.64 6.30 -52.49 -0.33 1.31 16 42 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 43 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 44 H 0.14 1.74 7.61 -52.49 -0.40 1.34 16 45 H 0.41 5.99 9.11 45.56 0.42 6.40 16 LS Contribution 362.34 15.07 5.46 5.46 Total: -1.00 -33.54 362.34 -7.84 -41.38 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -5.44 Total: 5.30 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -0.98 Total: 0.42 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: -0.44 Total: -37.01 kcal Atomic # 8 Polarization: -31.19 SS G_CDS: -1.42 Total: -32.61 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.54 -7.84 -41.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071226603.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.013 kcal (2) G-P(sol) polarization free energy of solvation -33.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds