Wall clock time and date at job start Tue Mar 31 2020 14:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42903 * 113.99876 * 2 1 4 4 C 1.52997 * 109.46988 * 180.02562 * 3 2 1 5 5 N 1.46907 * 109.47040 * 64.00209 * 4 3 2 6 6 C 1.46902 * 110.99845 * 71.97594 * 5 4 3 7 7 C 1.50705 * 109.47134 * 61.19506 * 6 5 4 8 8 H 1.07998 * 119.99287 * 0.97875 * 7 6 5 9 9 C 1.37869 * 120.00091 * 180.97475 * 7 6 5 10 10 N 1.31519 * 119.99922 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00237 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.46938 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.47061 * 120.00260 * 11 9 7 14 14 H 1.48500 * 109.47612 * 240.00580 * 11 9 7 15 15 C 1.46901 * 111.00297 * 195.93122 * 5 4 3 16 16 C 1.52997 * 109.47091 * 162.02524 * 15 5 4 17 17 O 1.42906 * 109.47066 * 68.56838 * 16 15 5 18 18 C 1.35638 * 116.99762 * 179.97438 * 17 16 15 19 19 C 1.38710 * 120.15621 * 0.02562 * 18 17 16 20 20 C 1.38052 * 120.08781 * 180.02562 * 19 18 17 21 21 C 1.38570 * 120.40264 * 359.95077 * 20 19 18 22 22 C 1.37764 * 120.30969 * 0.02562 * 21 20 19 23 23 C 1.39769 * 119.90206 * 0.02562 * 22 21 20 24 24 C 1.47393 * 120.19607 * 179.97438 * 23 22 21 25 25 O 1.21512 * 119.99760 * 179.97438 * 24 23 22 26 26 O 1.34748 * 120.00338 * 0.02562 * 24 23 22 27 27 H 1.08999 * 109.47510 * 59.99160 * 1 2 3 28 28 H 1.08995 * 109.47151 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46567 * 299.99727 * 1 2 3 30 30 H 1.08995 * 109.46998 * 60.00713 * 3 2 1 31 31 H 1.08998 * 109.47234 * 300.00509 * 3 2 1 32 32 H 1.09000 * 109.47212 * 304.00424 * 4 3 2 33 33 H 1.08997 * 109.47160 * 183.99786 * 4 3 2 34 34 H 1.09000 * 109.47243 * 181.19274 * 6 5 4 35 35 H 1.09000 * 109.47494 * 301.19637 * 6 5 4 36 36 H 0.96996 * 119.99888 * 180.02562 * 10 9 7 37 37 H 1.08999 * 109.46892 * 42.02577 * 15 5 4 38 38 H 1.09000 * 109.47151 * 282.02609 * 15 5 4 39 39 H 1.08994 * 109.47599 * 308.57105 * 16 15 5 40 40 H 1.08995 * 109.47080 * 188.56759 * 16 15 5 41 41 H 1.07993 * 119.95579 * 0.02562 * 19 18 17 42 42 H 1.07995 * 119.79434 * 179.97438 * 20 19 18 43 43 H 1.07999 * 119.84481 * 180.02562 * 21 20 19 44 44 H 1.08000 * 120.04383 * 179.74354 * 22 21 20 45 45 H 0.96701 * 117.00694 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9752 0.5410 -1.2458 6 6 3.8213 1.4488 -2.3905 7 6 4.6754 2.6724 -2.1797 8 1 5.2850 2.7589 -1.2924 9 6 4.6788 3.6811 -3.1195 10 7 3.9361 3.5757 -4.1999 11 14 5.7370 5.1980 -2.8579 12 1 6.4719 5.0733 -1.5736 13 1 6.7089 5.3220 -3.9738 14 1 4.8719 6.4044 -2.8186 15 6 5.3609 0.0668 -1.1326 16 6 5.6384 -0.9639 -2.2286 17 8 5.6405 -0.3160 -3.5024 18 6 5.8738 -1.0942 -4.5886 19 6 6.0962 -2.4548 -4.4363 20 6 6.3341 -3.2453 -5.5427 21 6 6.3516 -2.6887 -6.8116 22 6 6.1323 -1.3393 -6.9820 23 6 5.8913 -0.5268 -5.8706 24 6 5.6563 0.9177 -6.0453 25 8 5.4467 1.6207 -5.0766 26 8 5.6729 1.4587 -7.2793 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8901 30 1 1.6887 1.8463 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8526 0.5829 0.8510 33 1 3.9786 2.1779 0.0710 34 1 4.1341 0.9401 -3.3023 35 1 2.7765 1.7463 -2.4805 36 1 3.9388 4.2852 -4.8613 37 1 5.5088 -0.3930 -0.1555 38 1 6.0435 0.9092 -1.2448 39 1 4.8631 -1.7298 -2.2119 40 1 6.6099 -1.4266 -2.0547 41 1 6.0834 -2.8963 -3.4508 42 1 6.5071 -4.3041 -5.4186 43 1 6.5382 -3.3156 -7.6710 44 1 6.1510 -0.9093 -7.9725 45 1 5.5133 2.4102 -7.3439 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071226603.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:32 Heat of formation + Delta-G solvation = -144.728644 kcal Electronic energy + Delta-G solvation = -29038.918245 eV Core-core repulsion = 25022.121996 eV Total energy + Delta-G solvation = -4016.796250 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.41610 -40.07843 -39.24721 -38.35245 -37.34206 -36.51151 -34.27914 -32.45767 -31.88210 -30.56670 -29.81317 -27.78088 -26.75654 -25.34192 -25.10196 -23.88023 -22.36357 -21.95407 -21.11299 -19.20457 -18.49287 -18.28211 -17.64657 -17.39953 -17.29291 -16.68656 -16.58478 -16.39958 -16.02487 -15.83142 -15.60986 -15.33469 -15.13530 -15.08859 -14.54854 -14.05022 -13.80197 -13.65058 -13.32194 -13.13268 -13.09117 -12.78578 -12.68973 -12.60553 -12.42304 -12.32322 -12.17594 -12.02173 -11.88257 -11.80744 -11.60724 -11.35632 -11.26294 -10.91176 -10.45854 -10.18481 -9.96432 -9.07476 -8.80574 -7.83841 -5.92076 -0.04214 0.54057 1.33821 1.36777 1.43853 1.99146 2.37947 2.45917 2.51591 2.96331 3.04040 3.40745 3.46826 3.91240 3.99894 4.25490 4.26925 4.29561 4.33152 4.40533 4.43751 4.46409 4.58440 4.58745 4.62237 4.65100 4.72120 4.84380 4.86341 5.03167 5.04121 5.05929 5.18952 5.36131 5.43386 5.49650 5.54979 5.75649 5.90639 5.96057 6.20825 6.30082 6.40364 6.50520 6.63008 6.77963 7.20652 7.44164 7.71132 9.19935 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.009407 B = 0.005788 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2975.800671 B = 4836.567169 C = 6758.631245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.397 6.397 3 C 0.079 3.921 4 C 0.060 3.940 5 N -0.536 5.536 6 C 0.202 3.798 7 C -0.538 4.538 8 H 0.038 0.962 9 C 0.043 3.957 10 N -0.883 5.883 11 Si 0.926 3.074 12 H -0.277 1.277 13 H -0.292 1.292 14 H -0.284 1.284 15 C 0.058 3.942 16 C 0.063 3.937 17 O -0.287 6.287 18 C 0.163 3.837 19 C -0.230 4.230 20 C -0.039 4.039 21 C -0.175 4.175 22 C -0.034 4.034 23 C -0.189 4.189 24 C 0.468 3.532 25 O -0.448 6.448 26 O -0.526 6.526 27 H 0.027 0.973 28 H 0.100 0.900 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.022 0.978 32 H 0.083 0.917 33 H 0.041 0.959 34 H 0.057 0.943 35 H -0.026 1.026 36 H 0.248 0.752 37 H 0.105 0.895 38 H 0.028 0.972 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.152 0.848 42 H 0.168 0.832 43 H 0.164 0.836 44 H 0.148 0.852 45 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.698 -14.527 -0.578 14.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.316 6.316 3 C 0.002 3.998 4 C -0.068 4.068 5 N -0.259 5.259 6 C 0.076 3.924 7 C -0.577 4.577 8 H 0.056 0.944 9 C -0.158 4.158 10 N -0.521 5.521 11 Si 0.755 3.245 12 H -0.202 1.202 13 H -0.219 1.219 14 H -0.211 1.211 15 C -0.070 4.070 16 C -0.012 4.012 17 O -0.199 6.199 18 C 0.115 3.885 19 C -0.248 4.248 20 C -0.057 4.057 21 C -0.192 4.192 22 C -0.052 4.052 23 C -0.191 4.191 24 C 0.309 3.691 25 O -0.332 6.332 26 O -0.340 6.340 27 H 0.046 0.954 28 H 0.118 0.882 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.040 0.960 32 H 0.101 0.899 33 H 0.060 0.940 34 H 0.075 0.925 35 H -0.008 1.008 36 H 0.057 0.943 37 H 0.123 0.877 38 H 0.046 0.954 39 H 0.090 0.910 40 H 0.104 0.896 41 H 0.170 0.830 42 H 0.185 0.815 43 H 0.181 0.819 44 H 0.165 0.835 45 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 2.411 -15.007 -0.443 15.206 hybrid contribution 0.555 3.100 0.024 3.150 sum 2.967 -11.907 -0.419 12.278 Atomic orbital electron populations 1.22857 0.80710 1.03467 0.99925 1.87898 1.20334 1.28037 1.95329 1.22420 0.93977 0.84357 0.99040 1.22012 0.93451 0.98313 0.93046 1.62549 1.20037 1.39348 1.03994 1.19644 0.92742 0.89569 0.90473 1.21539 1.26729 1.04537 1.04933 0.94436 1.25246 0.96021 0.99576 0.94977 1.70066 1.40163 1.32298 1.09599 0.86040 0.79489 0.81680 0.77328 1.20154 1.21891 1.21056 1.22101 0.90504 0.97113 0.97307 1.23068 1.01459 0.95842 0.80790 1.86683 1.83143 1.36008 1.14040 1.19622 0.90897 0.91080 0.86930 1.21500 1.09902 0.91057 1.02360 1.21612 0.91788 1.01151 0.91139 1.21388 1.04776 0.94175 0.98900 1.21488 0.92509 0.94075 0.97147 1.18748 1.16732 0.90493 0.93138 1.21371 0.76337 0.89957 0.81458 1.91430 1.40007 1.61932 1.39794 1.84387 1.85601 1.31655 1.32345 0.95378 0.88196 0.92871 0.91761 0.95978 0.89879 0.94050 0.92537 1.00755 0.94274 0.87666 0.95404 0.91006 0.89574 0.83012 0.81470 0.81876 0.83464 0.72623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 11.01 113.37 1.25 1.99 16 2 O -0.40 -14.50 10.64 -148.98 -1.58 -16.09 16 3 C 0.08 3.01 6.08 71.98 0.44 3.44 16 4 C 0.06 2.40 5.19 86.30 0.45 2.85 16 5 N -0.54 -23.88 4.54 -900.77 -4.09 -27.97 16 6 C 0.20 11.10 4.70 85.56 0.40 11.51 16 7 C -0.54 -31.11 7.08 25.60 0.18 -30.93 16 8 H 0.04 2.17 6.04 -2.91 -0.02 2.16 16 9 C 0.04 2.56 4.65 84.65 0.39 2.95 16 10 N -0.88 -53.79 11.44 21.45 0.25 -53.54 16 11 Si 0.93 47.03 29.54 68.60 2.03 49.06 16 12 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 13 H -0.29 -14.90 7.11 99.48 0.71 -14.20 16 14 H -0.28 -14.04 7.11 99.48 0.71 -13.33 16 15 C 0.06 2.23 5.36 86.30 0.46 2.69 16 16 C 0.06 2.17 5.02 71.98 0.36 2.53 16 17 O -0.29 -12.35 5.55 -68.60 -0.38 -12.73 16 18 C 0.16 5.95 6.70 22.86 0.15 6.10 16 19 C -0.23 -6.01 9.03 22.34 0.20 -5.81 16 20 C -0.04 -0.77 10.03 22.30 0.22 -0.54 16 21 C -0.17 -3.52 10.02 22.24 0.22 -3.29 16 22 C -0.03 -0.93 9.61 22.53 0.22 -0.71 16 23 C -0.19 -6.98 5.88 -20.02 -0.12 -7.10 16 24 C 0.47 20.39 8.26 70.23 0.58 20.97 16 25 O -0.45 -24.07 11.61 26.80 0.31 -23.76 16 26 O -0.53 -18.83 12.68 -56.59 -0.72 -19.54 16 27 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.02 0.99 6.60 -2.39 -0.02 0.97 16 32 H 0.08 2.81 7.70 -2.39 -0.02 2.80 16 33 H 0.04 1.82 6.28 -2.39 -0.01 1.81 16 34 H 0.06 3.37 3.84 -2.39 -0.01 3.36 16 35 H -0.03 -1.59 6.59 -2.39 -0.02 -1.61 16 36 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 37 H 0.11 3.21 7.68 -2.39 -0.02 3.19 16 38 H 0.03 1.25 6.33 -2.39 -0.02 1.24 16 39 H 0.07 2.30 7.66 -2.39 -0.02 2.29 16 40 H 0.09 2.30 7.66 -2.39 -0.02 2.28 16 41 H 0.15 3.27 6.30 -2.91 -0.02 3.25 16 42 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16 43 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 44 H 0.15 3.54 7.61 -2.91 -0.02 3.52 16 45 H 0.41 12.99 9.11 -74.06 -0.67 12.32 16 Total: -1.00 -78.70 362.34 1.57 -77.12 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: 0.35 Total: 20.81 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: 5.42 Total: 6.64 kcal Atomic # 7 Polarization: -77.67 SS G_CDS: -3.85 Total: -81.52 kcal Atomic # 8 Polarization: -69.74 SS G_CDS: -2.37 Total: -72.11 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Total: -78.70 1.57 -77.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071226603.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.605 kcal (2) G-P(sol) polarization free energy of solvation -78.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds