Wall clock time and date at job start Tue Mar 31 2020 13:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45197 * 109.46802 * 2 1 4 4 C 1.34231 * 116.99866 * 179.97438 * 3 2 1 5 5 O 1.20826 * 119.99741 * 359.97438 * 4 3 2 6 6 C 1.50702 * 120.00188 * 180.02562 * 4 3 2 7 7 O 1.42903 * 109.47156 * 180.02562 * 6 4 3 8 8 C 1.35980 * 117.00204 * 179.97438 * 7 6 4 9 9 C 1.38699 * 119.99968 * 359.72674 * 8 7 6 10 10 C 1.38127 * 120.00104 * 179.76831 * 9 8 7 11 11 C 1.38692 * 119.99835 * 0.50126 * 10 9 8 12 12 O 1.35985 * 119.99861 * 179.72930 * 11 10 9 13 13 C 1.42899 * 117.00095 * 0.02562 * 12 11 10 14 14 C 1.53004 * 109.47014 * 179.97438 * 13 12 11 15 15 N 1.46496 * 109.46918 * 65.00725 * 14 13 12 16 16 C 1.46510 * 119.99781 * 269.99774 * 15 14 13 17 17 C 1.36939 * 120.00682 * 89.99556 * 15 14 13 18 18 H 1.08002 * 119.99567 * 22.71524 * 17 15 14 19 19 C 1.38812 * 120.00623 * 202.71452 * 17 15 14 20 20 N 1.31621 * 119.99644 * 11.50900 * 19 17 15 21 21 Si 1.86794 * 120.00187 * 191.50615 * 19 17 15 22 22 H 1.48495 * 109.47127 * 89.99780 * 21 19 17 23 23 H 1.48500 * 109.47358 * 209.99781 * 21 19 17 24 24 H 1.48497 * 109.46976 * 330.00054 * 21 19 17 25 25 C 1.38696 * 120.00326 * 359.74646 * 11 10 9 26 26 C 1.38137 * 119.99694 * 0.02562 * 25 11 10 27 27 H 1.08997 * 109.47626 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47216 * 300.00046 * 1 2 3 29 29 H 1.09003 * 109.47018 * 59.99661 * 1 2 3 30 30 H 1.08992 * 109.46906 * 240.00400 * 2 1 3 31 31 H 1.09000 * 109.47137 * 119.99835 * 2 1 3 32 32 H 1.08994 * 109.47087 * 60.00233 * 6 4 3 33 33 H 1.08999 * 109.46875 * 299.99622 * 6 4 3 34 34 H 1.08009 * 119.99527 * 359.97438 * 9 8 7 35 35 H 1.08003 * 120.00387 * 180.23290 * 10 9 8 36 36 H 1.08994 * 109.47479 * 300.00147 * 13 12 11 37 37 H 1.09002 * 109.46753 * 60.00742 * 13 12 11 38 38 H 1.09004 * 109.47147 * 184.99765 * 14 13 12 39 39 H 1.08997 * 109.47592 * 305.00447 * 14 13 12 40 40 H 1.08998 * 109.47083 * 93.91554 * 16 15 14 41 41 H 1.09008 * 109.46800 * 213.91449 * 16 15 14 42 42 H 1.08996 * 109.47075 * 333.91383 * 16 15 14 43 43 H 0.96998 * 120.00008 * 180.02562 * 20 19 17 44 44 H 1.07999 * 120.00120 * 179.97438 * 25 11 10 45 45 H 1.08004 * 119.99681 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0806 0.5867 0.0015 6 6 3.9206 2.9375 0.0012 7 8 5.3477 2.8627 0.0010 8 6 6.0277 4.0403 0.0010 9 6 5.3342 5.2415 -0.0046 10 6 6.0248 6.4377 0.0002 11 6 7.4117 6.4377 0.0001 12 8 8.0916 7.6153 -0.0007 13 6 7.3134 8.8138 -0.0009 14 6 8.2454 10.0272 -0.0012 15 7 9.0056 10.0586 -1.2531 16 6 10.2978 9.3739 -1.3429 17 6 8.5086 10.7279 -2.3395 18 1 7.7818 11.5150 -2.2027 19 6 8.9388 10.3947 -3.6166 20 7 9.6427 9.2993 -3.8090 21 14 8.5186 11.5009 -5.0619 22 1 9.5882 12.5162 -5.2355 23 1 8.4082 10.6824 -6.2961 24 1 7.2254 12.1835 -4.8033 25 6 8.1053 5.2366 0.0006 26 6 7.4146 4.0403 0.0006 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.5844 3.4693 0.8911 33 1 3.5851 3.4698 -0.8888 34 1 4.2541 5.2414 -0.0094 35 1 5.4848 7.3731 -0.0004 36 1 6.6842 8.8383 -0.8906 37 1 6.6850 8.8391 0.8894 38 1 7.6549 10.9390 0.0881 39 1 8.9343 9.9565 0.8405 40 1 10.1502 8.3702 -1.7414 41 1 10.9603 9.9334 -2.0034 42 1 10.7442 9.3089 -0.3506 43 1 9.9436 9.0667 -4.7013 44 1 9.1853 5.2366 0.0002 45 1 7.9546 3.1050 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075711824.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:17 Heat of formation + Delta-G solvation = -103.536918 kcal Electronic energy + Delta-G solvation = -26412.582477 eV Core-core repulsion = 22397.572435 eV Total energy + Delta-G solvation = -4015.010042 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.97913 -40.10920 -38.77590 -37.03811 -36.29132 -35.14644 -32.33057 -31.58661 -31.06197 -29.90600 -28.69138 -27.70359 -25.75433 -24.04501 -23.75092 -22.53663 -21.80310 -21.20386 -20.26270 -18.69309 -17.84965 -17.42425 -17.35533 -17.00485 -16.49496 -15.94439 -15.60366 -15.39253 -14.71498 -14.60080 -14.34622 -14.07481 -13.59097 -13.51044 -13.29170 -13.22703 -13.06635 -12.89301 -12.61062 -12.53770 -12.21812 -12.06353 -11.85974 -11.40856 -11.18183 -11.05645 -10.98869 -10.85065 -10.80315 -10.64695 -10.50847 -10.13992 -10.08623 -9.90501 -9.72764 -8.92517 -8.52177 -7.48944 -6.72982 -5.68842 -3.16264 1.40683 1.65877 1.77723 1.78374 3.35041 3.38539 3.44396 3.46187 3.82807 3.93334 4.18654 4.45901 4.50582 4.51195 4.60773 4.65964 4.80447 4.86879 4.93746 5.18797 5.30251 5.34450 5.39806 5.46772 5.49795 5.53954 5.62996 5.85536 5.96086 5.97906 6.04774 6.09830 6.17178 6.36541 6.46779 6.56944 6.66531 6.75369 6.91582 7.25144 7.37435 7.48368 7.79781 7.91936 7.99662 8.42433 9.26647 9.89564 10.39706 11.35291 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.018244 B = 0.002158 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.363214 B =12974.795923 C =13593.505000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.063 3.937 3 O -0.356 6.356 4 C 0.465 3.535 5 O -0.484 6.484 6 C 0.071 3.929 7 O -0.298 6.298 8 C 0.070 3.930 9 C -0.166 4.166 10 C -0.176 4.176 11 C 0.123 3.877 12 O -0.292 6.292 13 C 0.037 3.963 14 C 0.151 3.849 15 N -0.596 5.596 16 C 0.170 3.830 17 C -0.261 4.261 18 H 0.068 0.932 19 C 0.003 3.997 20 N -0.901 5.901 21 Si 0.904 3.096 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.280 1.280 25 C -0.118 4.118 26 C -0.102 4.102 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.126 0.874 35 H 0.131 0.869 36 H 0.062 0.938 37 H 0.040 0.960 38 H 0.066 0.934 39 H 0.048 0.952 40 H 0.033 0.967 41 H 0.040 0.960 42 H -0.005 1.005 43 H 0.252 0.748 44 H 0.139 0.861 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.644 -14.573 10.600 23.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.010 4.010 3 O -0.274 6.274 4 C 0.306 3.694 5 O -0.370 6.370 6 C -0.006 4.006 7 O -0.213 6.213 8 C 0.026 3.974 9 C -0.185 4.185 10 C -0.194 4.194 11 C 0.076 3.924 12 O -0.204 6.204 13 C -0.041 4.041 14 C 0.023 3.977 15 N -0.319 5.319 16 C 0.026 3.974 17 C -0.391 4.391 18 H 0.086 0.914 19 C -0.196 4.196 20 N -0.546 5.546 21 Si 0.734 3.266 22 H -0.215 1.215 23 H -0.218 1.218 24 H -0.206 1.206 25 C -0.136 4.136 26 C -0.121 4.121 27 H 0.100 0.900 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.144 0.856 35 H 0.149 0.851 36 H 0.080 0.920 37 H 0.058 0.942 38 H 0.084 0.916 39 H 0.066 0.934 40 H 0.051 0.949 41 H 0.058 0.942 42 H 0.014 0.986 43 H 0.062 0.938 44 H 0.157 0.843 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -15.051 -15.101 10.427 23.734 hybrid contribution -0.759 0.519 -1.021 1.374 sum -15.810 -14.582 9.406 23.475 Atomic orbital electron populations 1.21823 0.92260 1.03195 1.03726 1.23099 0.95489 0.79478 1.02967 1.86445 1.23474 1.33146 1.84334 1.23021 0.81041 0.91817 0.73484 1.90721 1.60265 1.42639 1.43331 1.21781 0.81881 0.91593 1.05337 1.86044 1.16244 1.28696 1.90325 1.18692 0.91631 0.83452 1.03589 1.20940 0.99615 0.91632 1.06282 1.21082 0.93443 0.98565 1.06360 1.19132 0.90389 0.87382 0.95539 1.86233 1.35334 1.11726 1.87119 1.23974 0.96094 0.84711 0.99305 1.20966 0.93586 0.92784 0.90365 1.43922 1.18320 1.61220 1.08393 1.20748 0.85356 0.97189 0.94108 1.19203 1.23521 1.11506 0.84841 0.91444 1.25057 1.00480 0.96552 0.97469 1.70094 1.40565 1.23015 1.20891 0.86275 0.78076 0.79857 0.82410 1.21483 1.21769 1.20566 1.20286 1.00572 0.88884 1.03890 1.20152 0.90422 0.98378 1.03103 0.89992 0.91329 0.91294 0.90914 0.90946 0.87795 0.87719 0.85622 0.85103 0.91980 0.94239 0.91566 0.93379 0.94915 0.94169 0.98612 0.93770 0.84345 0.84715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 10.29 37.16 0.38 -0.29 16 2 C 0.06 0.44 6.19 37.16 0.23 0.67 16 3 O -0.36 -3.20 10.22 -39.26 -0.40 -3.60 16 4 C 0.47 5.06 8.03 36.01 0.29 5.35 16 5 O -0.48 -6.94 16.25 -25.48 -0.41 -7.35 16 6 C 0.07 0.68 5.33 36.01 0.19 0.87 16 7 O -0.30 -4.01 9.67 -39.63 -0.38 -4.39 16 8 C 0.07 0.98 6.69 -39.24 -0.26 0.72 16 9 C -0.17 -2.18 9.03 -39.45 -0.36 -2.54 16 10 C -0.18 -2.68 9.03 -39.45 -0.36 -3.03 16 11 C 0.12 2.15 6.69 -39.24 -0.26 1.89 16 12 O -0.29 -5.82 9.70 -19.69 -0.19 -6.01 16 13 C 0.04 0.69 5.08 37.16 0.19 0.88 16 14 C 0.15 3.03 6.12 -4.04 -0.02 3.01 16 15 N -0.60 -15.03 2.89 -181.11 -0.52 -15.55 16 16 C 0.17 4.33 8.61 59.85 0.52 4.85 16 17 C -0.26 -7.12 9.67 -15.06 -0.15 -7.27 16 18 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 19 C 0.00 0.09 5.12 -17.43 -0.09 0.00 16 20 N -0.90 -26.61 10.62 55.49 0.59 -26.02 16 21 Si 0.90 21.88 29.57 -169.99 -5.03 16.85 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 C -0.12 -1.88 9.98 -39.45 -0.39 -2.27 16 26 C -0.10 -1.47 9.98 -39.45 -0.39 -1.87 16 27 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 28 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.51 8.13 -51.93 -0.42 0.09 16 31 H 0.07 0.49 8.13 -51.93 -0.42 0.07 16 32 H 0.10 0.74 7.67 -51.93 -0.40 0.34 16 33 H 0.11 0.81 7.65 -51.93 -0.40 0.41 16 34 H 0.13 1.23 6.29 -52.48 -0.33 0.90 16 35 H 0.13 1.84 6.29 -52.48 -0.33 1.51 16 36 H 0.06 1.26 7.66 -51.93 -0.40 0.86 16 37 H 0.04 0.60 7.66 -51.93 -0.40 0.20 16 38 H 0.07 1.22 8.03 -51.93 -0.42 0.80 16 39 H 0.05 0.89 7.87 -51.93 -0.41 0.49 16 40 H 0.03 0.91 7.43 -51.93 -0.39 0.52 16 41 H 0.04 1.09 7.20 -51.92 -0.37 0.72 16 42 H 0.00 -0.11 7.85 -51.93 -0.41 -0.51 16 43 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 44 H 0.14 2.08 8.06 -52.49 -0.42 1.66 16 45 H 0.13 1.71 8.06 -52.48 -0.42 1.28 16 LS Contribution 380.63 15.07 5.74 5.74 Total: -1.00 -33.88 380.63 -7.85 -41.73 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -6.75 Total: -2.36 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -0.49 Total: 0.97 kcal Atomic # 7 Polarization: -41.64 SS G_CDS: 0.07 Total: -41.58 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -1.39 Total: -21.36 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.88 -7.85 -41.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075711824.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.808 kcal (2) G-P(sol) polarization free energy of solvation -33.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds