Wall clock time and date at job start Tue Mar 31 2020 13:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45197 * 109.46802 * 2 1 4 4 C 1.34231 * 116.99866 * 179.97438 * 3 2 1 5 5 O 1.20826 * 119.99741 * 359.97438 * 4 3 2 6 6 C 1.50702 * 120.00188 * 180.02562 * 4 3 2 7 7 O 1.42903 * 109.47156 * 180.02562 * 6 4 3 8 8 C 1.35980 * 117.00204 * 179.97438 * 7 6 4 9 9 C 1.38699 * 119.99968 * 359.72674 * 8 7 6 10 10 C 1.38127 * 120.00104 * 179.76831 * 9 8 7 11 11 C 1.38692 * 119.99835 * 0.50126 * 10 9 8 12 12 O 1.35985 * 119.99861 * 179.72930 * 11 10 9 13 13 C 1.42899 * 117.00095 * 0.02562 * 12 11 10 14 14 C 1.53004 * 109.47014 * 179.97438 * 13 12 11 15 15 N 1.46496 * 109.46918 * 65.00725 * 14 13 12 16 16 C 1.46510 * 119.99781 * 269.99774 * 15 14 13 17 17 C 1.36939 * 120.00682 * 89.99556 * 15 14 13 18 18 H 1.08002 * 119.99567 * 22.71524 * 17 15 14 19 19 C 1.38812 * 120.00623 * 202.71452 * 17 15 14 20 20 N 1.31621 * 119.99644 * 11.50900 * 19 17 15 21 21 Si 1.86794 * 120.00187 * 191.50615 * 19 17 15 22 22 H 1.48495 * 109.47127 * 89.99780 * 21 19 17 23 23 H 1.48500 * 109.47358 * 209.99781 * 21 19 17 24 24 H 1.48497 * 109.46976 * 330.00054 * 21 19 17 25 25 C 1.38696 * 120.00326 * 359.74646 * 11 10 9 26 26 C 1.38137 * 119.99694 * 0.02562 * 25 11 10 27 27 H 1.08997 * 109.47626 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47216 * 300.00046 * 1 2 3 29 29 H 1.09003 * 109.47018 * 59.99661 * 1 2 3 30 30 H 1.08992 * 109.46906 * 240.00400 * 2 1 3 31 31 H 1.09000 * 109.47137 * 119.99835 * 2 1 3 32 32 H 1.08994 * 109.47087 * 60.00233 * 6 4 3 33 33 H 1.08999 * 109.46875 * 299.99622 * 6 4 3 34 34 H 1.08009 * 119.99527 * 359.97438 * 9 8 7 35 35 H 1.08003 * 120.00387 * 180.23290 * 10 9 8 36 36 H 1.08994 * 109.47479 * 300.00147 * 13 12 11 37 37 H 1.09002 * 109.46753 * 60.00742 * 13 12 11 38 38 H 1.09004 * 109.47147 * 184.99765 * 14 13 12 39 39 H 1.08997 * 109.47592 * 305.00447 * 14 13 12 40 40 H 1.08998 * 109.47083 * 93.91554 * 16 15 14 41 41 H 1.09008 * 109.46800 * 213.91449 * 16 15 14 42 42 H 1.08996 * 109.47075 * 333.91383 * 16 15 14 43 43 H 0.96998 * 120.00008 * 180.02562 * 20 19 17 44 44 H 1.07999 * 120.00120 * 179.97438 * 25 11 10 45 45 H 1.08004 * 119.99681 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0806 0.5867 0.0015 6 6 3.9206 2.9375 0.0012 7 8 5.3477 2.8627 0.0010 8 6 6.0277 4.0403 0.0010 9 6 5.3342 5.2415 -0.0046 10 6 6.0248 6.4377 0.0002 11 6 7.4117 6.4377 0.0001 12 8 8.0916 7.6153 -0.0007 13 6 7.3134 8.8138 -0.0009 14 6 8.2454 10.0272 -0.0012 15 7 9.0056 10.0586 -1.2531 16 6 10.2978 9.3739 -1.3429 17 6 8.5086 10.7279 -2.3395 18 1 7.7818 11.5150 -2.2027 19 6 8.9388 10.3947 -3.6166 20 7 9.6427 9.2993 -3.8090 21 14 8.5186 11.5009 -5.0619 22 1 9.5882 12.5162 -5.2355 23 1 8.4082 10.6824 -6.2961 24 1 7.2254 12.1835 -4.8033 25 6 8.1053 5.2366 0.0006 26 6 7.4146 4.0403 0.0006 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.5844 3.4693 0.8911 33 1 3.5851 3.4698 -0.8888 34 1 4.2541 5.2414 -0.0094 35 1 5.4848 7.3731 -0.0004 36 1 6.6842 8.8383 -0.8906 37 1 6.6850 8.8391 0.8894 38 1 7.6549 10.9390 0.0881 39 1 8.9343 9.9565 0.8405 40 1 10.1502 8.3702 -1.7414 41 1 10.9603 9.9334 -2.0034 42 1 10.7442 9.3089 -0.3506 43 1 9.9436 9.0667 -4.7013 44 1 9.1853 5.2366 0.0002 45 1 7.9546 3.1050 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075711824.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:16 Heat of formation + Delta-G solvation = -122.978014 kcal Electronic energy + Delta-G solvation = -26413.425506 eV Core-core repulsion = 22397.572435 eV Total energy + Delta-G solvation = -4015.853072 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.84561 -41.18629 -39.95573 -38.00856 -37.57759 -36.79855 -33.49930 -32.86394 -32.17308 -31.06028 -30.07264 -28.87690 -27.83038 -25.47201 -24.56939 -23.65844 -23.04799 -22.11559 -21.87415 -19.66720 -19.09638 -18.55390 -18.36769 -18.11822 -17.83194 -17.04915 -16.78968 -16.65968 -16.36296 -15.79111 -15.37487 -15.13662 -15.09736 -14.88305 -14.66146 -14.34248 -14.18376 -13.94516 -13.63805 -13.52994 -13.24968 -13.02014 -12.97028 -12.82844 -12.68346 -12.61283 -12.54626 -12.27701 -12.13672 -11.98337 -11.80736 -11.69382 -11.59930 -11.46398 -11.23083 -10.61831 -10.05472 -8.77598 -8.67256 -7.78713 -5.27807 0.28188 0.49432 0.96010 1.02022 1.47144 1.48703 1.57068 2.43344 2.52127 2.58570 2.76782 3.34515 3.46407 3.72207 3.80202 3.85655 3.95560 4.01171 4.03037 4.03815 4.22010 4.32085 4.33717 4.44204 4.48410 4.53472 4.56968 4.77405 4.83627 4.91490 4.92284 4.97127 5.09658 5.10891 5.11427 5.24488 5.35341 5.37125 5.40982 5.59618 5.66664 5.81870 6.24625 6.35168 6.56315 6.68353 7.17738 7.90025 8.35926 9.24637 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.018244 B = 0.002158 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.363214 B =12974.795923 C =13593.505000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.054 3.946 3 O -0.351 6.351 4 C 0.469 3.531 5 O -0.528 6.528 6 C 0.062 3.938 7 O -0.317 6.317 8 C 0.075 3.925 9 C -0.157 4.157 10 C -0.178 4.178 11 C 0.088 3.912 12 O -0.322 6.322 13 C 0.046 3.954 14 C 0.145 3.855 15 N -0.614 5.614 16 C 0.189 3.811 17 C -0.262 4.262 18 H 0.078 0.922 19 C -0.058 4.058 20 N -0.938 5.938 21 Si 0.968 3.032 22 H -0.287 1.287 23 H -0.300 1.300 24 H -0.264 1.264 25 C -0.131 4.131 26 C -0.110 4.110 27 H 0.100 0.900 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.137 0.863 33 H 0.131 0.869 34 H 0.166 0.834 35 H 0.143 0.857 36 H 0.039 0.961 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.063 0.937 40 H 0.001 0.999 41 H 0.012 0.988 42 H 0.022 0.978 43 H 0.245 0.755 44 H 0.135 0.865 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.524 -14.157 11.547 26.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.020 4.020 3 O -0.268 6.268 4 C 0.312 3.688 5 O -0.416 6.416 6 C -0.013 4.013 7 O -0.232 6.232 8 C 0.031 3.969 9 C -0.175 4.175 10 C -0.196 4.196 11 C 0.042 3.958 12 O -0.236 6.236 13 C -0.031 4.031 14 C 0.018 3.982 15 N -0.336 5.336 16 C 0.044 3.956 17 C -0.392 4.392 18 H 0.096 0.904 19 C -0.253 4.253 20 N -0.584 5.584 21 Si 0.797 3.203 22 H -0.214 1.214 23 H -0.227 1.227 24 H -0.188 1.188 25 C -0.149 4.149 26 C -0.129 4.129 27 H 0.119 0.881 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.154 0.846 33 H 0.148 0.852 34 H 0.184 0.816 35 H 0.161 0.839 36 H 0.058 0.942 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.082 0.918 40 H 0.019 0.981 41 H 0.031 0.969 42 H 0.040 0.960 43 H 0.054 0.946 44 H 0.152 0.848 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -17.989 -14.669 11.416 25.867 hybrid contribution 0.025 0.272 -1.207 1.238 sum -17.965 -14.396 10.209 25.184 Atomic orbital electron populations 1.21841 0.90029 1.04524 1.03957 1.23376 0.97197 0.78554 1.02828 1.86456 1.22347 1.34343 1.83699 1.23337 0.81326 0.91916 0.72180 1.90710 1.61260 1.44049 1.45603 1.22165 0.79820 0.91277 1.08030 1.86018 1.18534 1.28483 1.90157 1.18768 0.91557 0.84110 1.02418 1.21293 1.01535 0.90278 1.04439 1.21277 0.92529 0.99962 1.05883 1.19422 0.91678 0.86788 0.97931 1.86164 1.36616 1.12696 1.88075 1.23721 0.95430 0.83895 1.00071 1.21214 0.94121 0.94425 0.88426 1.44142 1.18826 1.61084 1.09593 1.20400 0.85675 0.94975 0.94528 1.19610 1.22640 1.11389 0.85544 0.90402 1.25856 1.01228 0.97984 1.00192 1.70287 1.42443 1.24932 1.20774 0.85243 0.78347 0.77903 0.78813 1.21437 1.22667 1.18845 1.20371 1.00693 0.89278 1.04578 1.20315 0.91299 0.98252 1.02997 0.88141 0.90939 0.91145 0.91275 0.91029 0.84560 0.85199 0.81637 0.83949 0.94224 0.90211 0.89588 0.91819 0.98110 0.96941 0.95994 0.94610 0.84757 0.83588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.29 71.98 0.74 -0.24 16 2 C 0.05 0.68 6.19 71.98 0.45 1.12 16 3 O -0.35 -5.65 10.22 -51.43 -0.53 -6.18 16 4 C 0.47 9.46 8.03 71.24 0.57 10.03 16 5 O -0.53 -14.91 16.25 28.39 0.46 -14.45 16 6 C 0.06 1.01 5.33 71.24 0.38 1.39 16 7 O -0.32 -7.89 9.67 -74.24 -0.72 -8.60 16 8 C 0.08 1.97 6.69 22.49 0.15 2.12 16 9 C -0.16 -3.66 9.03 22.35 0.20 -3.46 16 10 C -0.18 -5.09 9.03 22.35 0.20 -4.89 16 11 C 0.09 3.06 6.69 22.49 0.15 3.21 16 12 O -0.32 -12.88 9.70 -93.38 -0.91 -13.78 16 13 C 0.05 1.65 5.08 71.98 0.37 2.02 16 14 C 0.14 5.56 6.12 86.38 0.53 6.09 16 15 N -0.61 -30.84 2.89 -726.91 -2.10 -32.94 16 16 C 0.19 9.84 8.61 127.77 1.10 10.94 16 17 C -0.26 -14.20 9.67 84.03 0.81 -13.39 16 18 H 0.08 3.98 7.85 -2.91 -0.02 3.96 16 19 C -0.06 -3.27 5.12 84.86 0.43 -2.83 16 20 N -0.94 -57.04 10.62 21.65 0.23 -56.81 16 21 Si 0.97 45.30 29.57 68.60 2.03 47.32 16 22 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 23 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 24 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 25 C -0.13 -4.24 9.98 22.36 0.22 -4.02 16 26 C -0.11 -3.14 9.98 22.35 0.22 -2.92 16 27 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 28 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.07 0.92 8.13 -2.39 -0.02 0.90 16 31 H 0.07 0.92 8.13 -2.39 -0.02 0.90 16 32 H 0.14 1.35 7.67 -2.39 -0.02 1.33 16 33 H 0.13 1.48 7.65 -2.39 -0.02 1.46 16 34 H 0.17 2.43 6.29 -2.91 -0.02 2.41 16 35 H 0.14 3.65 6.29 -2.91 -0.02 3.64 16 36 H 0.04 1.57 7.66 -2.39 -0.02 1.56 16 37 H 0.08 2.18 7.66 -2.39 -0.02 2.16 16 38 H 0.09 2.94 8.03 -2.39 -0.02 2.92 16 39 H 0.06 2.24 7.87 -2.39 -0.02 2.23 16 40 H 0.00 0.03 7.43 -2.39 -0.02 0.01 16 41 H 0.01 0.67 7.20 -2.38 -0.02 0.66 16 42 H 0.02 0.99 7.85 -2.39 -0.02 0.97 16 43 H 0.24 14.56 8.31 -92.71 -0.77 13.79 16 44 H 0.13 4.28 8.06 -2.91 -0.02 4.26 16 45 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -75.22 380.63 5.98 -69.24 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: 0.98 Total: 11.00 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: 6.53 Total: 5.19 kcal Atomic # 7 Polarization: -87.88 SS G_CDS: -1.87 Total: -89.75 kcal Atomic # 8 Polarization: -41.32 SS G_CDS: -1.69 Total: -43.01 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -75.22 5.98 -69.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075711824.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.740 kcal (2) G-P(sol) polarization free energy of solvation -75.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds