Wall clock time and date at job start Tue Mar 31 2020 13:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34231 * 116.99938 * 2 1 4 4 O 1.20823 * 119.99961 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99963 * 179.97438 * 3 2 1 6 6 N 1.46503 * 109.46822 * 179.97438 * 5 3 2 7 7 C 1.36936 * 120.00150 * 269.20199 * 6 5 3 8 8 H 1.07991 * 120.00081 * 189.27631 * 7 6 5 9 9 C 1.38812 * 119.99644 * 9.28331 * 7 6 5 10 10 N 1.31618 * 120.00332 * 24.75375 * 9 7 6 11 11 Si 1.86801 * 119.99870 * 204.75485 * 9 7 6 12 12 H 1.48502 * 109.47155 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47450 * 120.00021 * 11 9 7 14 14 H 1.48502 * 109.47179 * 240.00295 * 11 9 7 15 15 C 1.46494 * 119.99675 * 89.20918 * 6 5 3 16 16 C 1.53000 * 109.47089 * 269.99345 * 15 6 5 17 17 C 1.53006 * 109.47149 * 180.02562 * 16 15 6 18 18 O 1.42901 * 109.46983 * 180.02562 * 17 16 15 19 19 C 1.35983 * 116.99869 * 179.97438 * 18 17 16 20 20 C 1.38696 * 120.00022 * 359.73371 * 19 18 17 21 21 C 1.38132 * 119.99910 * 179.76452 * 20 19 18 22 22 C 1.38698 * 119.99824 * 0.50370 * 21 20 19 23 23 O 1.35987 * 119.99903 * 179.72534 * 22 21 20 24 24 C 1.42898 * 116.99858 * 0.02562 * 23 22 21 25 25 C 1.38694 * 120.00090 * 359.74273 * 22 21 20 26 26 C 1.38132 * 120.00032 * 0.02562 * 25 22 21 27 27 H 1.09005 * 109.46979 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47475 * 300.00326 * 1 2 3 29 29 H 1.08997 * 109.47223 * 60.00495 * 1 2 3 30 30 H 1.08997 * 109.47090 * 59.99687 * 5 3 2 31 31 H 1.08994 * 109.47048 * 299.99982 * 5 3 2 32 32 H 0.97000 * 120.00147 * 179.97438 * 10 9 7 33 33 H 1.09008 * 109.47295 * 149.99969 * 15 6 5 34 34 H 1.08996 * 109.47502 * 29.99868 * 15 6 5 35 35 H 1.09004 * 109.46705 * 60.00630 * 16 15 6 36 36 H 1.08996 * 109.47376 * 300.00601 * 16 15 6 37 37 H 1.08996 * 109.47126 * 60.00406 * 17 16 15 38 38 H 1.08999 * 109.46767 * 300.00013 * 17 16 15 39 39 H 1.08001 * 119.99685 * 359.97438 * 20 19 18 40 40 H 1.07998 * 119.99857 * 180.22545 * 21 20 19 41 41 H 1.09000 * 109.47340 * 59.99596 * 24 23 22 42 42 H 1.08999 * 109.47178 * 179.97438 * 24 23 22 43 43 H 1.08994 * 109.47419 * 299.99899 * 24 23 22 44 44 H 1.08002 * 120.00240 * 179.97438 * 25 22 21 45 45 H 1.08004 * 120.00002 * 179.97438 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9816 2.6798 -0.0002 7 6 4.1921 3.3310 -1.1863 8 1 4.6398 4.3137 -1.1907 9 6 3.8297 2.7279 -2.3828 10 7 2.8849 1.8117 -2.3984 11 14 4.6829 3.2168 -3.9711 12 1 5.6999 4.2606 -3.6857 13 1 5.3464 2.0274 -4.5630 14 1 3.6804 3.7515 -4.9273 15 6 4.1719 3.3880 1.2681 16 6 2.8550 4.0435 1.6887 17 6 3.0539 4.7837 3.0130 18 8 1.8238 5.3954 3.4062 19 6 1.8280 6.0975 4.5707 20 6 2.9911 6.1899 5.3206 21 6 2.9967 6.9072 6.5010 22 6 1.8364 7.5263 6.9417 23 8 1.8404 8.2278 8.1067 24 6 3.0746 8.2858 8.8248 25 6 0.6720 7.4297 6.1944 26 6 0.6677 6.7164 5.0115 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 3.9564 0.7806 -0.8891 31 1 3.9557 0.7810 0.8908 32 1 2.6314 1.3905 -3.2347 33 1 4.9365 4.1552 1.1447 34 1 4.4872 2.6809 2.0353 35 1 2.0905 3.2764 1.8121 36 1 2.5397 4.7506 0.9215 37 1 3.8183 5.5508 2.8892 38 1 3.3694 4.0768 3.7804 39 1 3.8933 5.7038 4.9798 40 1 3.9033 6.9821 7.0831 41 1 3.8369 8.7511 8.2000 42 1 2.9397 8.8746 9.7320 43 1 3.3886 7.2762 9.0897 44 1 -0.2316 7.9114 6.5378 45 1 -0.2392 6.6408 4.4298 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080896822.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:57 Heat of formation + Delta-G solvation = -123.814655 kcal Electronic energy + Delta-G solvation = -27147.562042 eV Core-core repulsion = 23131.672691 eV Total energy + Delta-G solvation = -4015.889351 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.36336 -40.77371 -39.96303 -38.09219 -37.30029 -36.42215 -34.35459 -32.42974 -32.09897 -30.28589 -29.65730 -27.93718 -27.65569 -27.12845 -24.64549 -23.34995 -22.71747 -22.05067 -21.45954 -19.40914 -18.88374 -18.53656 -18.03074 -17.55363 -17.21941 -17.10389 -16.85378 -16.55726 -16.47752 -15.79165 -15.60738 -15.43842 -15.09150 -14.58929 -14.44536 -14.27828 -14.17773 -13.85515 -13.58002 -13.43321 -13.28602 -13.14968 -12.89261 -12.69406 -12.67090 -12.46563 -12.33803 -12.15892 -12.01478 -11.83151 -11.59080 -11.57727 -11.33181 -11.16357 -10.95222 -10.50357 -10.08806 -9.06154 -8.71930 -7.96308 -5.23734 0.24771 0.46177 1.47666 1.51022 1.60605 2.05372 2.24845 2.36501 2.45416 2.58206 2.72892 3.25766 3.54403 3.76953 3.84402 4.03412 4.14025 4.19323 4.35031 4.39165 4.43257 4.43268 4.46155 4.47228 4.52301 4.52849 4.58238 4.64529 4.72661 4.77050 4.84540 4.90289 4.97887 5.08360 5.21413 5.25693 5.27681 5.34798 5.56120 5.61239 5.64580 6.00106 6.20945 6.37845 6.57569 7.02548 7.53810 7.81095 8.15433 9.13215 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.016883 B = 0.002573 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.083827 B =10880.693207 C =11836.364119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.387 6.387 3 C 0.464 3.536 4 O -0.538 6.538 5 C 0.185 3.815 6 N -0.580 5.580 7 C -0.254 4.254 8 H 0.083 0.917 9 C -0.052 4.052 10 N -0.929 5.929 11 Si 0.969 3.031 12 H -0.266 1.266 13 H -0.286 1.286 14 H -0.307 1.307 15 C 0.148 3.852 16 C -0.122 4.122 17 C 0.071 3.929 18 O -0.341 6.341 19 C 0.075 3.925 20 C -0.173 4.173 21 C -0.165 4.165 22 C 0.077 3.923 23 O -0.334 6.334 24 C 0.018 3.982 25 C -0.117 4.117 26 C -0.129 4.129 27 H 0.125 0.875 28 H 0.049 0.951 29 H 0.032 0.968 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.249 0.751 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.045 0.955 36 H 0.030 0.970 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.147 0.853 40 H 0.157 0.843 41 H 0.063 0.937 42 H 0.119 0.881 43 H 0.063 0.937 44 H 0.151 0.849 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.301 5.481 20.197 21.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.304 6.304 3 C 0.306 3.694 4 O -0.426 6.426 5 C 0.055 3.945 6 N -0.299 5.299 7 C -0.384 4.384 8 H 0.100 0.900 9 C -0.247 4.247 10 N -0.576 5.576 11 Si 0.798 3.202 12 H -0.190 1.190 13 H -0.212 1.212 14 H -0.235 1.235 15 C 0.023 3.977 16 C -0.162 4.162 17 C -0.004 4.004 18 O -0.256 6.256 19 C 0.030 3.970 20 C -0.192 4.192 21 C -0.183 4.183 22 C 0.032 3.968 23 O -0.249 6.249 24 C -0.077 4.077 25 C -0.135 4.135 26 C -0.148 4.148 27 H 0.143 0.857 28 H 0.068 0.932 29 H 0.051 0.949 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.058 0.942 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.064 0.936 36 H 0.049 0.951 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.165 0.835 40 H 0.174 0.826 41 H 0.081 0.919 42 H 0.137 0.863 43 H 0.082 0.918 44 H 0.169 0.831 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.773 5.790 20.025 20.921 hybrid contribution -0.277 0.241 -1.495 1.539 sum 1.496 6.031 18.530 19.544 Atomic orbital electron populations 1.23112 0.77850 1.03982 1.00475 1.86504 1.22937 1.35685 1.85296 1.25812 0.94178 0.80197 0.69254 1.90453 1.67541 1.37535 1.47081 1.20564 0.84892 0.86627 1.02396 1.44499 1.75204 1.07699 1.02544 1.19613 1.32694 1.02056 0.84019 0.89964 1.25451 0.98158 1.00319 1.00727 1.70007 1.28978 1.32478 1.26135 0.85188 0.77963 0.77506 0.79563 1.19010 1.21238 1.23516 1.21071 0.93760 0.95944 0.86960 1.22122 1.01264 0.98839 0.93970 1.22888 0.84444 0.96413 0.96698 1.86132 1.37275 1.65097 1.37091 1.19307 0.95453 0.95220 0.87001 1.21316 0.97967 1.03394 0.96535 1.21301 0.98548 1.00519 0.97978 1.19048 0.94621 0.95365 0.87748 1.86047 1.37213 1.69024 1.32618 1.23325 0.84457 1.03138 0.96745 1.20400 0.97916 1.01364 0.93851 1.20448 0.97346 0.99701 0.97302 0.85688 0.93205 0.94916 0.88744 0.89008 0.94171 0.91249 0.90357 0.93621 0.95098 0.90823 0.90346 0.83490 0.82590 0.91880 0.86323 0.91799 0.83132 0.84473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.43 10.56 113.37 1.20 2.63 16 2 O -0.39 -16.82 10.57 -51.43 -0.54 -17.37 16 3 C 0.46 22.68 5.95 71.24 0.42 23.11 16 4 O -0.54 -29.89 13.41 21.97 0.29 -29.59 16 5 C 0.18 8.37 5.58 85.63 0.48 8.85 16 6 N -0.58 -27.17 2.09 -706.36 -1.48 -28.64 16 7 C -0.25 -13.32 9.70 84.03 0.82 -12.51 16 8 H 0.08 4.21 7.93 -2.92 -0.02 4.19 16 9 C -0.05 -2.81 4.89 84.86 0.41 -2.40 16 10 N -0.93 -53.07 9.02 21.65 0.20 -52.88 16 11 Si 0.97 44.31 29.62 68.60 2.03 46.35 16 12 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 13 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 14 H -0.31 -14.66 7.11 99.48 0.71 -13.95 16 15 C 0.15 5.47 5.71 86.38 0.49 5.97 16 16 C -0.12 -4.78 5.15 30.60 0.16 -4.62 16 17 C 0.07 2.13 4.74 71.98 0.34 2.47 16 18 O -0.34 -11.71 10.14 -93.36 -0.95 -12.65 16 19 C 0.08 2.17 6.69 22.49 0.15 2.32 16 20 C -0.17 -4.05 9.03 22.35 0.20 -3.85 16 21 C -0.16 -3.29 9.03 22.35 0.20 -3.09 16 22 C 0.08 1.68 6.69 22.49 0.15 1.83 16 23 O -0.33 -6.45 10.50 -93.40 -0.98 -7.43 16 24 C 0.02 0.19 9.81 113.37 1.11 1.30 16 25 C -0.12 -2.66 9.98 22.35 0.22 -2.44 16 26 C -0.13 -3.41 9.98 22.35 0.22 -3.18 16 27 H 0.12 3.26 8.14 -2.38 -0.02 3.24 16 28 H 0.05 1.71 8.13 -2.39 -0.02 1.69 16 29 H 0.03 1.28 8.13 -2.39 -0.02 1.26 16 30 H 0.09 4.70 6.29 -2.39 -0.02 4.69 16 31 H 0.09 3.35 7.90 -2.39 -0.02 3.34 16 32 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 33 H 0.07 2.36 8.03 -2.38 -0.02 2.34 16 34 H 0.08 2.35 7.90 -2.39 -0.02 2.33 16 35 H 0.05 2.05 6.30 -2.38 -0.02 2.03 16 36 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.07 1.93 7.67 -2.39 -0.02 1.91 16 38 H 0.08 1.96 7.65 -2.39 -0.02 1.94 16 39 H 0.15 2.87 6.29 -2.91 -0.02 2.85 16 40 H 0.16 2.13 6.29 -2.91 -0.02 2.11 16 41 H 0.06 0.56 7.66 -2.39 -0.02 0.54 16 42 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.06 0.55 7.66 -2.39 -0.02 0.54 16 44 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 45 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 Total: -1.00 -72.25 372.84 6.14 -66.10 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: 0.99 Total: 19.73 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: 6.58 Total: 16.38 kcal Atomic # 7 Polarization: -80.24 SS G_CDS: -1.28 Total: -81.52 kcal Atomic # 8 Polarization: -64.86 SS G_CDS: -2.18 Total: -67.03 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.35 kcal Total: -72.25 6.14 -66.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080896822.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.711 kcal (2) G-P(sol) polarization free energy of solvation -72.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds