Wall clock time and date at job start Tue Mar 31 2020 14:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 C 1.50702 * 120.00072 * 179.72119 * 7 2 1 10 10 N 1.46495 * 109.47571 * 180.02562 * 9 7 2 11 11 C 1.34965 * 125.97869 * 124.71943 * 10 9 7 12 12 C 1.35241 * 107.86302 * 179.87777 * 11 10 9 13 13 C 1.40411 * 107.86611 * 0.38043 * 12 11 10 14 14 N 1.40154 * 125.97106 * 179.74212 * 13 12 11 15 15 C 1.34771 * 120.00504 * 0.02562 * 14 13 12 16 16 O 1.21297 * 119.99965 * 0.02562 * 15 14 13 17 17 C 1.50695 * 120.00677 * 179.97438 * 15 14 13 18 18 C 1.52995 * 109.47723 * 180.02562 * 17 15 14 19 19 O 1.42897 * 109.47352 * 180.02562 * 18 17 15 20 20 C 1.42903 * 114.00075 * 180.02562 * 19 18 17 21 21 C 1.53169 * 109.54324 * 269.55266 * 20 19 18 22 22 C 1.53090 * 109.16387 * 183.15283 * 21 20 19 23 23 O 1.42907 * 109.41674 * 57.60770 * 22 21 20 24 24 C 1.42903 * 114.09722 * 298.84228 * 23 22 21 25 25 C 1.53095 * 109.41175 * 61.15736 * 24 23 22 26 26 N 1.31221 * 108.05164 * 359.76641 * 13 12 11 27 27 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47047 * 300.00890 * 9 7 2 29 29 H 1.09001 * 109.46702 * 60.00291 * 9 7 2 30 30 H 1.08001 * 126.06619 * 359.97438 * 11 10 9 31 31 H 1.07998 * 126.06422 * 180.12700 * 12 11 10 32 32 H 0.97004 * 120.00050 * 180.02562 * 14 13 12 33 33 H 1.09000 * 109.47215 * 300.01034 * 17 15 14 34 34 H 1.09009 * 109.46645 * 60.00093 * 17 15 14 35 35 H 1.09004 * 109.47018 * 300.00055 * 18 17 15 36 36 H 1.08995 * 109.47387 * 59.99654 * 18 17 15 37 37 H 1.09001 * 109.54282 * 29.81689 * 20 19 18 38 38 H 1.09001 * 109.52206 * 303.05738 * 21 20 19 39 39 H 1.09000 * 109.52822 * 63.24719 * 21 20 19 40 40 H 1.09001 * 109.47915 * 297.62189 * 22 21 20 41 41 H 1.09002 * 109.47929 * 177.59150 * 22 21 20 42 42 H 1.09004 * 109.47772 * 301.17966 * 24 23 22 43 43 H 1.08995 * 109.49002 * 181.14200 * 24 23 22 44 44 H 1.09000 * 109.52123 * 182.49035 * 25 24 23 45 45 H 1.08993 * 109.52588 * 62.29606 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1940 -0.0121 10 7 3.9999 -2.5752 -0.0181 11 6 4.8469 -3.1128 -0.9209 12 6 5.0532 -4.4047 -0.5782 13 6 4.2965 -4.6708 0.5743 14 7 4.2277 -5.8973 1.2489 15 6 4.9306 -6.9550 0.7978 16 8 5.6232 -6.8453 -0.1920 17 6 4.8572 -8.2737 1.5235 18 6 5.7421 -9.2982 0.8107 19 8 5.6719 -10.5487 1.4986 20 6 6.4674 -11.5805 0.9115 21 6 5.6320 -12.3491 -0.1168 22 6 6.4668 -13.5008 -0.6828 23 8 6.8947 -14.3474 0.3860 24 6 7.7190 -13.6943 1.3535 25 6 6.9344 -12.5504 2.0013 26 7 3.6647 -3.5705 0.9089 27 1 -0.4850 0.8400 0.0004 28 1 3.8711 -0.6780 -0.9023 29 1 3.8785 -0.6824 0.8776 30 1 5.2837 -2.6015 -1.7660 31 1 5.6844 -5.1081 -1.1009 32 1 3.6742 -5.9850 2.0407 33 1 5.2048 -8.1442 2.5484 34 1 3.8259 -8.6269 1.5316 35 1 5.3947 -9.4278 -0.2143 36 1 6.7731 -8.9448 0.8029 37 1 7.3346 -11.1380 0.4212 38 1 4.7393 -12.7486 0.3645 39 1 5.3417 -11.6781 -0.9253 40 1 7.3384 -13.0985 -1.1991 41 1 5.8630 -14.0772 -1.3837 42 1 8.6070 -13.2944 0.8638 43 1 8.0173 -14.4099 2.1196 44 1 7.5756 -12.0231 2.7077 45 1 6.0680 -12.9538 2.5254 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084547812.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:15 Heat of formation + Delta-G solvation = -49.499438 kcal Electronic energy + Delta-G solvation = -26056.422851 eV Core-core repulsion = 22076.048800 eV Total energy + Delta-G solvation = -3980.374050 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.82568 -40.06230 -39.42096 -37.79403 -34.88573 -33.47344 -33.25536 -31.67733 -31.60071 -30.87280 -29.45296 -27.24441 -25.23200 -24.24839 -23.86924 -22.55457 -21.45363 -20.83334 -20.11289 -19.63868 -17.71574 -17.11518 -16.79500 -16.67963 -16.61252 -16.31155 -15.94315 -15.50025 -15.30461 -15.14213 -14.58158 -14.44947 -14.10517 -13.82975 -13.62802 -13.49671 -13.05751 -12.86321 -12.59469 -12.42756 -12.39968 -12.07607 -12.02544 -11.80250 -11.48323 -11.20024 -11.18518 -10.91462 -10.82360 -10.56207 -10.17190 -10.14220 -10.02277 -9.83724 -9.71966 -9.55687 -8.79234 -8.25013 -7.59182 -6.25909 -4.28555 2.20470 2.51671 2.79796 3.13892 3.18691 3.19630 3.25852 3.43093 3.61444 3.82806 4.20457 4.27181 4.31287 4.47812 4.49759 4.61356 4.72653 4.75262 4.79357 4.94160 5.01814 5.05279 5.17299 5.20048 5.23674 5.35006 5.42844 5.46426 5.51897 5.54889 5.65601 5.67396 5.76770 6.13384 6.34212 6.39577 6.49641 6.60589 6.70471 6.84135 7.21395 7.29140 7.49690 7.76781 8.13240 8.30446 8.51155 8.83432 9.28791 10.86726 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.042847 B = 0.001700 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.330794 B =16465.416048 C =16563.400864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.076 3.924 3 Si 0.875 3.125 4 H -0.272 1.272 5 H -0.265 1.265 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.085 0.915 9 C 0.232 3.768 10 N -0.318 5.318 11 C 0.052 3.948 12 C -0.284 4.284 13 C 0.258 3.742 14 N -0.629 5.629 15 C 0.525 3.475 16 O -0.521 6.521 17 C -0.135 4.135 18 C 0.078 3.922 19 O -0.382 6.382 20 C 0.091 3.909 21 C -0.180 4.180 22 C 0.063 3.937 23 O -0.383 6.383 24 C 0.063 3.937 25 C -0.154 4.154 26 N -0.296 5.296 27 H 0.268 0.732 28 H 0.054 0.946 29 H 0.038 0.962 30 H 0.169 0.831 31 H 0.161 0.839 32 H 0.414 0.586 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.052 0.948 41 H 0.098 0.902 42 H 0.052 0.948 43 H 0.100 0.900 44 H 0.081 0.919 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.560 -24.028 2.004 28.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.128 4.128 3 Si 0.701 3.299 4 H -0.197 1.197 5 H -0.190 1.190 6 H -0.206 1.206 7 C -0.574 4.574 8 H 0.103 0.897 9 C 0.113 3.887 10 N -0.100 5.100 11 C -0.098 4.098 12 C -0.315 4.315 13 C 0.005 3.995 14 N -0.276 5.276 15 C 0.311 3.689 16 O -0.396 6.396 17 C -0.175 4.175 18 C 0.001 3.999 19 O -0.301 6.301 20 C 0.034 3.966 21 C -0.218 4.218 22 C -0.014 4.014 23 O -0.301 6.301 24 C -0.014 4.014 25 C -0.192 4.192 26 N -0.127 5.127 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.186 0.814 31 H 0.179 0.821 32 H 0.249 0.751 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.070 0.930 41 H 0.116 0.884 42 H 0.070 0.930 43 H 0.118 0.882 44 H 0.099 0.901 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 14.884 -23.383 2.298 27.813 hybrid contribution 0.580 1.081 -0.388 1.287 sum 15.463 -22.302 1.910 27.205 Atomic orbital electron populations 1.69872 1.06154 1.27328 1.49058 1.24835 0.94881 0.98811 0.94231 0.86884 0.80218 0.83795 0.79006 1.19698 1.18974 1.20560 1.21104 0.87760 0.95725 1.52786 0.89650 1.20066 0.97487 0.72935 0.98237 1.48634 1.32742 1.10195 1.18423 1.22566 0.95988 0.94696 0.96518 1.21539 1.11610 0.96808 1.01554 1.19124 0.99004 0.86653 0.94729 1.42450 1.47488 1.07366 1.30341 1.20356 0.79113 0.84717 0.84761 1.90653 1.39498 1.83787 1.25662 1.21412 1.03529 0.91271 1.01296 1.22165 0.99427 0.82856 0.95484 1.87851 1.68935 1.19603 1.53716 1.22065 0.92932 0.87996 0.93655 1.22749 1.00659 0.98472 0.99960 1.22574 0.97685 0.91891 0.89236 1.87950 1.69036 1.36952 1.36208 1.22589 0.92335 0.94785 0.91646 1.22309 1.01877 0.96494 0.98486 1.77402 1.23592 0.95547 1.16122 0.92150 0.92869 0.94430 0.81354 0.82120 0.75082 0.87590 0.87518 0.92176 0.92169 0.91839 0.89954 0.90384 0.92979 0.88393 0.92957 0.88221 0.90067 0.89966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.43 13.96 55.43 0.77 -25.66 16 2 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 3 Si 0.87 20.01 27.47 -169.99 -4.67 15.34 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 5 H -0.26 -5.62 6.54 56.52 0.37 -5.25 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.54 -15.03 9.79 -34.44 -0.34 -15.36 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 9 C 0.23 5.44 5.33 -5.20 -0.03 5.41 16 10 N -0.32 -7.13 3.67 -62.56 -0.23 -7.35 16 11 C 0.05 0.98 11.43 -17.24 -0.20 0.78 16 12 C -0.28 -5.39 9.61 -39.83 -0.38 -5.77 16 13 C 0.26 5.02 8.11 -154.39 -1.25 3.77 16 14 N -0.63 -9.19 5.45 -11.13 -0.06 -9.25 16 15 C 0.52 6.87 7.80 -10.99 -0.09 6.78 16 16 O -0.52 -8.36 13.11 5.54 0.07 -8.29 16 17 C -0.13 -1.20 6.07 -27.89 -0.17 -1.37 16 18 C 0.08 0.72 5.04 37.16 0.19 0.91 16 19 O -0.38 -3.56 10.00 -35.23 -0.35 -3.91 16 20 C 0.09 0.70 2.70 -26.55 -0.07 0.63 16 21 C -0.18 -1.29 5.76 -26.60 -0.15 -1.44 16 22 C 0.06 0.41 6.84 37.20 0.25 0.66 16 23 O -0.38 -3.11 10.77 -35.23 -0.38 -3.49 16 24 C 0.06 0.37 6.84 37.21 0.25 0.63 16 25 C -0.15 -1.01 5.79 -26.59 -0.15 -1.16 16 26 N -0.30 -6.68 12.42 31.44 0.39 -6.29 16 27 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.05 1.15 7.12 -51.93 -0.37 0.78 16 29 H 0.04 0.87 7.57 -51.93 -0.39 0.47 16 30 H 0.17 2.52 8.06 -52.49 -0.42 2.10 16 31 H 0.16 2.93 5.92 -52.49 -0.31 2.62 16 32 H 0.41 4.87 8.82 -40.82 -0.36 4.51 16 33 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.11 0.81 8.14 -51.92 -0.42 0.39 16 35 H 0.06 0.59 7.95 -51.93 -0.41 0.17 16 36 H 0.06 0.57 8.04 -51.93 -0.42 0.15 16 37 H 0.06 0.45 7.79 -51.93 -0.40 0.05 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.54 7.99 -51.93 -0.42 0.12 16 40 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 373.08 15.07 5.62 5.62 Total: -1.00 -34.45 373.08 -7.96 -42.42 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -6.90 Total: 4.37 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -2.23 Total: -3.50 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: 0.87 Total: -48.56 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.66 Total: -15.68 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -4.67 Total: 15.34 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.45 -7.96 -42.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084547812.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.080 kcal (2) G-P(sol) polarization free energy of solvation -34.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds