Wall clock time and date at job start Tue Mar 31 2020 13:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.46876 * 2 1 4 4 C 1.37097 * 120.00115 * 274.88386 * 3 2 1 5 5 H 1.07998 * 119.99615 * 186.12219 * 4 3 2 6 6 C 1.38947 * 119.99963 * 6.12050 * 4 3 2 7 7 N 1.31415 * 120.00145 * 6.64558 * 6 4 3 8 8 Si 1.86797 * 120.00137 * 186.64240 * 6 4 3 9 9 H 1.48498 * 109.47067 * 89.99989 * 8 6 4 10 10 H 1.48495 * 109.47363 * 210.00285 * 8 6 4 11 11 H 1.48501 * 109.46784 * 330.00192 * 8 6 4 12 12 C 1.34781 * 119.99646 * 94.88326 * 3 2 1 13 13 O 1.21294 * 119.99638 * 186.00263 * 12 3 2 14 14 C 1.50697 * 120.00109 * 6.00479 * 12 3 2 15 15 C 1.50702 * 110.01534 * 298.86946 * 14 12 3 16 16 C 1.38229 * 119.98376 * 116.65943 * 15 14 12 17 17 C 1.38192 * 120.04780 * 180.02562 * 16 15 14 18 18 C 1.38499 * 120.02552 * 359.78548 * 17 16 15 19 19 F 1.35092 * 120.01249 * 180.26153 * 18 17 16 20 20 C 1.38403 * 119.97208 * 0.46458 * 18 17 16 21 21 C 1.38434 * 119.94971 * 359.51812 * 20 18 17 22 22 F 1.35099 * 120.01420 * 180.27734 * 21 20 18 23 23 C 1.54266 * 110.03509 * 60.26313 * 14 12 3 24 24 C 1.54965 * 104.15642 * 95.75423 * 23 14 12 25 25 C 1.54887 * 102.77985 * 37.88905 * 24 23 14 26 26 C 1.53879 * 110.02968 * 177.48355 * 14 12 3 27 27 H 1.08998 * 109.47304 * 305.81601 * 1 2 3 28 28 H 1.08992 * 109.47493 * 65.82233 * 1 2 3 29 29 H 1.09003 * 109.47102 * 185.82220 * 1 2 3 30 30 H 1.08999 * 109.47024 * 240.00294 * 2 1 3 31 31 H 1.09004 * 109.47128 * 119.99740 * 2 1 3 32 32 H 0.96996 * 120.00325 * 179.97438 * 7 6 4 33 33 H 1.07998 * 119.97900 * 0.02562 * 16 15 14 34 34 H 1.08004 * 119.98546 * 180.02562 * 17 16 15 35 35 H 1.08000 * 120.01801 * 179.79402 * 20 18 17 36 36 H 1.08997 * 110.48604 * 214.39976 * 23 14 12 37 37 H 1.08997 * 110.48519 * 337.04433 * 23 14 12 38 38 H 1.08999 * 110.72160 * 279.56929 * 24 23 14 39 39 H 1.09005 * 110.75815 * 156.22007 * 24 23 14 40 40 H 1.08997 * 110.49045 * 203.40233 * 25 24 23 41 41 H 1.09008 * 110.48909 * 80.76076 * 25 24 23 42 42 H 1.08992 * 110.03219 * 359.94865 * 26 14 12 43 43 H 1.08998 * 110.03370 * 121.32918 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1515 2.0613 -1.1830 5 1 2.6034 3.0421 -1.1940 6 6 1.7051 1.4885 -2.3676 7 7 1.0391 0.3560 -2.3398 8 14 2.0515 2.3284 -3.9997 9 1 3.3453 1.8415 -4.5422 10 1 0.9627 2.0139 -4.9592 11 1 2.1219 3.7976 -3.7952 12 6 2.3365 1.9835 1.1630 13 8 2.6362 3.1587 1.1753 14 6 2.3202 1.1966 2.4482 15 6 0.9331 0.6702 2.7130 16 6 0.7059 -0.6929 2.7447 17 6 -0.5655 -1.1771 2.9869 18 6 -1.6128 -0.2968 3.2027 19 9 -2.8546 -0.7704 3.4447 20 6 -1.3874 1.0682 3.1661 21 6 -0.1132 1.5521 2.9237 22 9 0.1093 2.8842 2.8933 23 6 3.3223 0.0268 2.3644 24 6 4.6053 0.5779 3.0365 25 6 4.0431 1.4265 4.2039 26 6 2.7783 2.0865 3.6169 27 1 -0.3634 0.6014 0.8333 28 1 -0.3634 0.4209 -0.9374 29 1 -0.3633 -1.0224 0.1043 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.7271 -0.0437 -3.1667 33 1 1.5226 -1.3801 2.5800 34 1 -0.7419 -2.2423 3.0118 35 1 -2.2042 1.7553 3.3310 36 1 2.9463 -0.8376 2.9118 37 1 3.5176 -0.2345 1.3244 38 1 5.1674 1.2015 2.3413 39 1 5.2241 -0.2363 3.4138 40 1 4.7645 2.1857 4.5056 41 1 3.7834 0.7885 5.0488 42 1 3.0133 3.0872 3.2544 43 1 1.9971 2.1383 4.3753 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089783707.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:44 Heat of formation + Delta-G solvation = -66.351167 kcal Electronic energy + Delta-G solvation = -30031.300037 eV Core-core repulsion = 25906.814974 eV Total energy + Delta-G solvation = -4124.485063 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.144 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.84771 -48.56442 -40.55593 -37.99499 -36.61229 -35.04690 -32.12882 -31.06489 -30.69802 -29.26988 -28.44158 -27.42956 -24.81322 -23.41876 -22.35145 -22.11371 -20.77609 -20.27509 -18.42229 -18.00485 -16.92740 -16.77043 -16.37049 -15.80091 -15.54579 -15.31761 -15.20674 -14.92446 -14.52259 -14.16879 -14.07623 -13.90258 -13.58944 -13.13219 -12.92994 -12.75298 -12.38237 -12.26464 -11.82290 -11.70624 -11.48108 -11.18493 -11.10726 -10.97787 -10.79571 -10.77215 -10.69581 -10.49131 -10.41243 -10.30997 -10.12242 -10.03907 -9.71753 -8.88007 -8.79788 -8.56380 -8.01430 -7.68952 -6.16531 -3.79883 1.16850 1.22441 3.14802 3.24654 3.30257 3.54109 3.82706 4.08541 4.11908 4.60161 4.66405 4.75017 4.87773 4.91357 4.99489 5.07122 5.21140 5.30649 5.38912 5.65415 5.73190 5.82795 5.87862 5.95641 5.99676 6.01758 6.11898 6.12525 6.22252 6.26740 6.28360 6.33805 6.44933 6.51988 6.56465 6.74293 6.83953 6.87299 6.91726 6.98569 7.42545 7.61101 7.90106 8.10530 8.56035 9.20193 9.47791 10.00236 10.69035 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011607 B = 0.006596 C = 0.005114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.675295 B = 4243.862569 C = 5473.535158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.108 3.892 3 N -0.437 5.437 4 C -0.290 4.290 5 H 0.102 0.898 6 C 0.021 3.979 7 N -0.877 5.877 8 Si 0.929 3.071 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.271 1.271 12 C 0.456 3.544 13 O -0.582 6.582 14 C -0.030 4.030 15 C -0.091 4.091 16 C -0.061 4.061 17 C -0.160 4.160 18 C 0.118 3.882 19 F -0.138 7.138 20 C -0.194 4.194 21 C 0.141 3.859 22 F -0.119 7.119 23 C -0.124 4.124 24 C -0.122 4.122 25 C -0.120 4.120 26 C -0.108 4.108 27 H 0.022 0.978 28 H 0.092 0.908 29 H 0.029 0.971 30 H 0.113 0.887 31 H 0.040 0.960 32 H 0.263 0.737 33 H 0.149 0.851 34 H 0.139 0.861 35 H 0.143 0.857 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.095 0.905 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.374 -6.497 10.902 12.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.015 4.015 3 N -0.154 5.154 4 C -0.418 4.418 5 H 0.120 0.880 6 C -0.179 4.179 7 N -0.519 5.519 8 Si 0.756 3.244 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.196 1.196 12 C 0.243 3.757 13 O -0.467 6.467 14 C -0.033 4.033 15 C -0.092 4.092 16 C -0.078 4.078 17 C -0.179 4.179 18 C 0.099 3.901 19 F -0.117 7.117 20 C -0.214 4.214 21 C 0.121 3.879 22 F -0.097 7.097 23 C -0.161 4.161 24 C -0.159 4.159 25 C -0.157 4.157 26 C -0.146 4.146 27 H 0.041 0.959 28 H 0.110 0.890 29 H 0.048 0.952 30 H 0.130 0.870 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.166 0.834 34 H 0.157 0.843 35 H 0.161 0.839 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.114 0.886 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.365 -5.995 10.714 12.283 hybrid contribution -0.458 0.370 -0.916 1.089 sum -0.823 -5.625 9.798 11.328 Atomic orbital electron populations 1.22418 0.96831 0.98580 1.02759 1.22051 0.94817 0.83451 1.01139 1.43736 1.54928 1.12050 1.04714 1.19830 1.36498 1.02451 0.83041 0.88041 1.25241 0.96269 0.96773 0.99630 1.70121 1.36448 1.18392 1.26984 0.85868 0.77851 0.79574 0.81103 1.20489 1.20986 1.19608 1.19384 0.85013 0.87385 0.83906 1.90478 1.54792 1.16002 1.85418 1.20151 0.90549 0.96263 0.96373 1.19833 0.94886 0.93299 1.01217 1.20939 0.96661 0.94180 0.96059 1.21059 0.92121 1.00126 1.04605 1.17210 0.79941 0.91359 1.01591 1.91488 1.39546 1.88808 1.91848 1.20924 0.97239 0.95055 1.08146 1.17103 0.92699 0.78168 0.99939 1.91588 1.95158 1.29698 1.93279 1.22848 0.94609 0.96429 1.02242 1.22483 0.96925 0.99055 0.97461 1.22326 0.97145 0.98751 0.97494 1.22217 0.96639 1.00842 0.94877 0.95901 0.88970 0.95175 0.86975 0.94174 0.92578 0.83355 0.84330 0.83935 0.90547 0.89805 0.91157 0.91683 0.91795 0.92115 0.88638 0.92367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 7.82 37.16 0.29 -2.88 16 2 C 0.11 2.35 4.13 -4.04 -0.02 2.33 16 3 N -0.44 -10.85 2.54 -114.81 -0.29 -11.14 16 4 C -0.29 -7.92 9.52 -14.93 -0.14 -8.06 16 5 H 0.10 2.94 7.22 -52.49 -0.38 2.56 16 6 C 0.02 0.54 5.35 -17.47 -0.09 0.45 16 7 N -0.88 -21.89 7.21 55.50 0.40 -21.49 16 8 Si 0.93 20.58 29.56 -169.99 -5.02 15.55 16 9 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 12 C 0.46 10.89 5.62 -10.98 -0.06 10.83 16 13 O -0.58 -15.97 14.82 5.55 0.08 -15.89 16 14 C -0.03 -0.55 0.32 -155.69 -0.05 -0.60 16 15 C -0.09 -1.55 2.42 -104.54 -0.25 -1.80 16 16 C -0.06 -0.86 5.98 -39.60 -0.24 -1.09 16 17 C -0.16 -2.11 9.55 -39.50 -0.38 -2.49 16 18 C 0.12 1.72 7.15 -39.42 -0.28 1.43 16 19 F -0.14 -1.96 17.27 2.25 0.04 -1.92 16 20 C -0.19 -3.03 9.48 -39.45 -0.37 -3.41 16 21 C 0.14 2.52 5.24 -39.43 -0.21 2.31 16 22 F -0.12 -2.42 15.34 2.25 0.03 -2.39 16 23 C -0.12 -1.90 4.23 -25.03 -0.11 -2.01 16 24 C -0.12 -1.70 6.91 -24.70 -0.17 -1.87 16 25 C -0.12 -1.63 6.83 -25.07 -0.17 -1.80 16 26 C -0.11 -1.85 5.19 -25.61 -0.13 -1.98 16 27 H 0.02 0.47 3.98 -51.93 -0.21 0.27 16 28 H 0.09 2.28 5.88 -51.93 -0.31 1.98 16 29 H 0.03 0.57 8.12 -51.93 -0.42 0.15 16 30 H 0.11 2.67 5.81 -51.93 -0.30 2.37 16 31 H 0.04 0.74 2.27 -51.93 -0.12 0.62 16 32 H 0.26 6.31 8.31 -40.82 -0.34 5.97 16 33 H 0.15 1.78 5.09 -52.49 -0.27 1.51 16 34 H 0.14 1.44 8.06 -52.48 -0.42 1.02 16 35 H 0.14 1.98 8.06 -52.49 -0.42 1.56 16 36 H 0.08 0.95 5.44 -51.93 -0.28 0.66 16 37 H 0.08 1.42 6.02 -51.93 -0.31 1.11 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 42 H 0.10 1.92 6.39 -51.93 -0.33 1.58 16 43 H 0.06 0.94 7.04 -51.93 -0.37 0.57 16 LS Contribution 324.07 15.07 4.88 4.88 Total: -1.00 -29.45 324.07 -7.23 -36.68 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -4.96 Total: 6.35 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: -2.39 Total: -10.63 kcal Atomic # 7 Polarization: -32.74 SS G_CDS: 0.11 Total: -32.63 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: 0.08 Total: -15.89 kcal Atomic # 9 Polarization: -4.38 SS G_CDS: 0.07 Total: -4.31 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.45 -7.23 -36.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089783707.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.676 kcal (2) G-P(sol) polarization free energy of solvation -29.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds