Wall clock time and date at job start Tue Mar 31 2020 13:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.46876 * 2 1 4 4 C 1.37097 * 120.00115 * 274.88386 * 3 2 1 5 5 H 1.07998 * 119.99615 * 186.12219 * 4 3 2 6 6 C 1.38947 * 119.99963 * 6.12050 * 4 3 2 7 7 N 1.31415 * 120.00145 * 6.64558 * 6 4 3 8 8 Si 1.86797 * 120.00137 * 186.64240 * 6 4 3 9 9 H 1.48498 * 109.47067 * 89.99989 * 8 6 4 10 10 H 1.48495 * 109.47363 * 210.00285 * 8 6 4 11 11 H 1.48501 * 109.46784 * 330.00192 * 8 6 4 12 12 C 1.34781 * 119.99646 * 94.88326 * 3 2 1 13 13 O 1.21294 * 119.99638 * 186.00263 * 12 3 2 14 14 C 1.50697 * 120.00109 * 6.00479 * 12 3 2 15 15 C 1.50702 * 110.01534 * 298.86946 * 14 12 3 16 16 C 1.38229 * 119.98376 * 116.65943 * 15 14 12 17 17 C 1.38192 * 120.04780 * 180.02562 * 16 15 14 18 18 C 1.38499 * 120.02552 * 359.78548 * 17 16 15 19 19 F 1.35092 * 120.01249 * 180.26153 * 18 17 16 20 20 C 1.38403 * 119.97208 * 0.46458 * 18 17 16 21 21 C 1.38434 * 119.94971 * 359.51812 * 20 18 17 22 22 F 1.35099 * 120.01420 * 180.27734 * 21 20 18 23 23 C 1.54266 * 110.03509 * 60.26313 * 14 12 3 24 24 C 1.54965 * 104.15642 * 95.75423 * 23 14 12 25 25 C 1.54887 * 102.77985 * 37.88905 * 24 23 14 26 26 C 1.53879 * 110.02968 * 177.48355 * 14 12 3 27 27 H 1.08998 * 109.47304 * 305.81601 * 1 2 3 28 28 H 1.08992 * 109.47493 * 65.82233 * 1 2 3 29 29 H 1.09003 * 109.47102 * 185.82220 * 1 2 3 30 30 H 1.08999 * 109.47024 * 240.00294 * 2 1 3 31 31 H 1.09004 * 109.47128 * 119.99740 * 2 1 3 32 32 H 0.96996 * 120.00325 * 179.97438 * 7 6 4 33 33 H 1.07998 * 119.97900 * 0.02562 * 16 15 14 34 34 H 1.08004 * 119.98546 * 180.02562 * 17 16 15 35 35 H 1.08000 * 120.01801 * 179.79402 * 20 18 17 36 36 H 1.08997 * 110.48604 * 214.39976 * 23 14 12 37 37 H 1.08997 * 110.48519 * 337.04433 * 23 14 12 38 38 H 1.08999 * 110.72160 * 279.56929 * 24 23 14 39 39 H 1.09005 * 110.75815 * 156.22007 * 24 23 14 40 40 H 1.08997 * 110.49045 * 203.40233 * 25 24 23 41 41 H 1.09008 * 110.48909 * 80.76076 * 25 24 23 42 42 H 1.08992 * 110.03219 * 359.94865 * 26 14 12 43 43 H 1.08998 * 110.03370 * 121.32918 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1515 2.0613 -1.1830 5 1 2.6034 3.0421 -1.1940 6 6 1.7051 1.4885 -2.3676 7 7 1.0391 0.3560 -2.3398 8 14 2.0515 2.3284 -3.9997 9 1 3.3453 1.8415 -4.5422 10 1 0.9627 2.0139 -4.9592 11 1 2.1219 3.7976 -3.7952 12 6 2.3365 1.9835 1.1630 13 8 2.6362 3.1587 1.1753 14 6 2.3202 1.1966 2.4482 15 6 0.9331 0.6702 2.7130 16 6 0.7059 -0.6929 2.7447 17 6 -0.5655 -1.1771 2.9869 18 6 -1.6128 -0.2968 3.2027 19 9 -2.8546 -0.7704 3.4447 20 6 -1.3874 1.0682 3.1661 21 6 -0.1132 1.5521 2.9237 22 9 0.1093 2.8842 2.8933 23 6 3.3223 0.0268 2.3644 24 6 4.6053 0.5779 3.0365 25 6 4.0431 1.4265 4.2039 26 6 2.7783 2.0865 3.6169 27 1 -0.3634 0.6014 0.8333 28 1 -0.3634 0.4209 -0.9374 29 1 -0.3633 -1.0224 0.1043 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.7271 -0.0437 -3.1667 33 1 1.5226 -1.3801 2.5800 34 1 -0.7419 -2.2423 3.0118 35 1 -2.2042 1.7553 3.3310 36 1 2.9463 -0.8376 2.9118 37 1 3.5176 -0.2345 1.3244 38 1 5.1674 1.2015 2.3413 39 1 5.2241 -0.2363 3.4138 40 1 4.7645 2.1857 4.5056 41 1 3.7834 0.7885 5.0488 42 1 3.0133 3.0872 3.2544 43 1 1.9971 2.1383 4.3753 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089783707.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:43 Heat of formation + Delta-G solvation = -81.783105 kcal Electronic energy + Delta-G solvation = -30031.969216 eV Core-core repulsion = 25906.814974 eV Total energy + Delta-G solvation = -4125.154242 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.144 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.00085 -49.96813 -42.01506 -39.45184 -38.08075 -36.91122 -33.84069 -32.54792 -31.89898 -31.03811 -29.69750 -28.78048 -26.66198 -24.71522 -23.75008 -23.55508 -22.40656 -21.45821 -19.96047 -19.23929 -18.80996 -18.05833 -17.85906 -17.21380 -16.98584 -16.69575 -16.50286 -16.27729 -16.12720 -15.74924 -15.36502 -15.32903 -15.14445 -14.66476 -14.57476 -14.20048 -13.79421 -13.56463 -13.49139 -13.25072 -12.90101 -12.77330 -12.60260 -12.57963 -12.28022 -12.21489 -12.03466 -11.94882 -11.90469 -11.86741 -11.69862 -11.38538 -11.35954 -10.69618 -10.36553 -9.96193 -9.62288 -9.42938 -8.11796 -5.83706 -0.03826 0.04326 1.35027 1.39768 1.50301 2.03629 2.26442 2.37775 2.90072 3.07636 3.11033 3.46818 3.49678 3.55430 3.69666 3.78778 3.98068 4.03736 4.19530 4.36281 4.50084 4.52766 4.61310 4.67009 4.80065 4.83503 4.86982 4.95642 4.96546 5.00401 5.07266 5.10181 5.10864 5.17284 5.20517 5.26068 5.33972 5.36048 5.43602 5.55790 5.70427 5.80295 6.06592 6.14197 6.62517 7.23592 7.58735 8.11760 8.69390 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011607 B = 0.006596 C = 0.005114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.675295 B = 4243.862569 C = 5473.535158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.113 3.887 3 N -0.449 5.449 4 C -0.336 4.336 5 H 0.065 0.935 6 C -0.002 4.002 7 N -0.872 5.872 8 Si 0.983 3.017 9 H -0.268 1.268 10 H -0.271 1.271 11 H -0.286 1.286 12 C 0.446 3.554 13 O -0.635 6.635 14 C -0.026 4.026 15 C -0.104 4.104 16 C -0.057 4.057 17 C -0.140 4.140 18 C 0.119 3.881 19 F -0.134 7.134 20 C -0.198 4.198 21 C 0.106 3.894 22 F -0.147 7.147 23 C -0.123 4.123 24 C -0.119 4.119 25 C -0.110 4.110 26 C -0.109 4.109 27 H 0.023 0.977 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.269 0.731 33 H 0.180 0.820 34 H 0.180 0.820 35 H 0.150 0.850 36 H 0.120 0.880 37 H 0.065 0.935 38 H 0.040 0.960 39 H 0.104 0.896 40 H 0.068 0.932 41 H 0.094 0.906 42 H 0.052 0.948 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.630 -10.448 12.072 15.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.008 4.008 3 N -0.165 5.165 4 C -0.464 4.464 5 H 0.083 0.917 6 C -0.203 4.203 7 N -0.513 5.513 8 Si 0.808 3.192 9 H -0.193 1.193 10 H -0.196 1.196 11 H -0.212 1.212 12 C 0.235 3.765 13 O -0.523 6.523 14 C -0.029 4.029 15 C -0.106 4.106 16 C -0.075 4.075 17 C -0.159 4.159 18 C 0.100 3.900 19 F -0.113 7.113 20 C -0.217 4.217 21 C 0.086 3.914 22 F -0.125 7.125 23 C -0.160 4.160 24 C -0.157 4.157 25 C -0.148 4.148 26 C -0.147 4.147 27 H 0.042 0.958 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.110 0.890 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.197 0.803 34 H 0.197 0.803 35 H 0.167 0.833 36 H 0.138 0.862 37 H 0.084 0.916 38 H 0.059 0.941 39 H 0.123 0.877 40 H 0.087 0.913 41 H 0.113 0.887 42 H 0.071 0.929 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.639 -9.995 11.884 15.542 hybrid contribution -0.476 1.617 -1.275 2.114 sum -1.114 -8.378 10.609 13.564 Atomic orbital electron populations 1.22265 0.96563 0.99941 1.00817 1.22074 0.94890 0.81897 1.01973 1.43942 1.55143 1.13106 1.04355 1.19645 1.39206 1.02271 0.85277 0.91672 1.25812 0.95542 0.97402 1.01537 1.70235 1.35069 1.18164 1.27815 0.85079 0.78416 0.77791 0.77884 1.19323 1.19591 1.21173 1.20430 0.83258 0.87298 0.85523 1.90433 1.56603 1.18657 1.86655 1.20088 0.92782 0.96929 0.93141 1.19864 0.93635 0.94608 1.02460 1.21270 0.98155 0.92940 0.95101 1.21475 0.90802 1.01862 1.01739 1.17320 0.80540 0.90966 1.01222 1.91506 1.39437 1.88591 1.91754 1.21047 0.96612 0.96245 1.07845 1.17501 0.94193 0.77355 1.02303 1.91519 1.95416 1.31757 1.93830 1.22929 0.94488 0.96558 1.02056 1.22493 0.96531 0.99803 0.96839 1.22331 0.95181 0.99105 0.98163 1.22185 0.98784 0.98947 0.94827 0.95816 0.92548 0.92263 0.88975 0.90373 0.92054 0.80297 0.80283 0.83264 0.86170 0.91609 0.94111 0.87717 0.91331 0.88721 0.92935 0.91777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.74 7.82 71.98 0.56 -5.18 16 2 C 0.11 4.84 4.13 86.38 0.36 5.20 16 3 N -0.45 -23.10 2.54 -635.53 -1.62 -24.72 16 4 C -0.34 -19.33 9.52 84.04 0.80 -18.53 16 5 H 0.07 4.12 7.22 -2.91 -0.02 4.10 16 6 C 0.00 -0.11 5.35 84.93 0.45 0.34 16 7 N -0.87 -43.50 7.21 21.66 0.16 -43.34 16 8 Si 0.98 43.01 29.56 68.60 2.03 45.04 16 9 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 10 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 11 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 12 C 0.45 22.34 5.62 87.66 0.49 22.83 16 13 O -0.64 -37.80 14.82 -3.07 -0.05 -37.84 16 14 C -0.03 -0.95 0.32 -52.95 -0.02 -0.96 16 15 C -0.10 -3.38 2.42 -19.81 -0.05 -3.43 16 16 C -0.06 -1.37 5.98 22.26 0.13 -1.23 16 17 C -0.14 -2.98 9.55 22.32 0.21 -2.76 16 18 C 0.12 3.06 7.15 22.37 0.16 3.22 16 19 F -0.13 -3.36 17.27 44.97 0.78 -2.58 16 20 C -0.20 -5.98 9.48 22.36 0.21 -5.77 16 21 C 0.11 3.81 5.24 22.37 0.12 3.92 16 22 F -0.15 -6.35 15.34 44.97 0.69 -5.66 16 23 C -0.12 -3.46 4.23 31.70 0.13 -3.32 16 24 C -0.12 -3.05 6.91 31.91 0.22 -2.83 16 25 C -0.11 -2.78 6.83 31.67 0.22 -2.57 16 26 C -0.11 -3.80 5.19 31.32 0.16 -3.64 16 27 H 0.02 0.96 3.98 -2.39 -0.01 0.95 16 28 H 0.06 2.78 5.88 -2.39 -0.01 2.76 16 29 H 0.06 2.07 8.12 -2.39 -0.02 2.05 16 30 H 0.09 4.32 5.81 -2.39 -0.01 4.31 16 31 H 0.08 2.68 2.27 -2.38 -0.01 2.68 16 32 H 0.27 12.63 8.31 -92.71 -0.77 11.86 16 33 H 0.18 3.12 5.09 -2.91 -0.01 3.10 16 34 H 0.18 2.44 8.06 -2.91 -0.02 2.41 16 35 H 0.15 4.13 8.06 -2.91 -0.02 4.10 16 36 H 0.12 2.30 5.44 -2.39 -0.01 2.28 16 37 H 0.07 2.11 6.02 -2.39 -0.01 2.10 16 38 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 40 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 42 H 0.05 2.27 6.39 -2.39 -0.02 2.26 16 43 H 0.06 2.09 7.04 -2.39 -0.02 2.07 16 Total: -1.00 -70.95 324.07 7.23 -63.72 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 1.07 Total: 20.11 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: 4.17 Total: -14.73 kcal Atomic # 7 Polarization: -66.60 SS G_CDS: -1.46 Total: -68.06 kcal Atomic # 8 Polarization: -37.80 SS G_CDS: -0.05 Total: -37.84 kcal Atomic # 9 Polarization: -9.70 SS G_CDS: 1.47 Total: -8.24 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -70.95 7.23 -63.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089783707.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.061 kcal (2) G-P(sol) polarization free energy of solvation -70.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds