Wall clock time and date at job start Tue Mar 31 2020 14:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99864 * 2 1 4 4 C 1.53001 * 109.46882 * 180.02562 * 3 2 1 5 5 N 1.46894 * 109.47290 * 68.07530 * 4 3 2 6 6 C 1.46892 * 110.99958 * 157.92601 * 5 4 3 7 7 C 1.50699 * 109.47669 * 287.99482 * 6 5 4 8 8 H 1.08005 * 119.99663 * 3.29547 * 7 6 5 9 9 C 1.37878 * 120.00323 * 183.29025 * 7 6 5 10 10 N 1.31522 * 119.99814 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 120.00057 * 0.02562 * 9 7 6 12 12 H 1.48491 * 109.47117 * 89.99749 * 11 9 7 13 13 H 1.48498 * 109.46961 * 210.00080 * 11 9 7 14 14 H 1.48501 * 109.47066 * 329.99395 * 11 9 7 15 15 C 1.46903 * 110.99780 * 281.88005 * 5 4 3 16 16 C 1.50699 * 109.46679 * 164.66189 * 15 5 4 17 17 C 1.38246 * 119.90962 * 269.97985 * 16 15 5 18 18 C 1.38643 * 120.12599 * 180.02562 * 17 16 15 19 19 C 1.39115 * 119.86491 * 359.71624 * 18 17 16 20 20 C 1.38936 * 119.80455 * 0.55685 * 19 18 17 21 21 O 1.35996 * 120.02753 * 179.72519 * 20 19 18 22 22 C 1.42899 * 117.00151 * 179.71987 * 21 20 19 23 23 C 1.38210 * 119.91044 * 89.99924 * 16 15 5 24 24 O 1.36595 * 108.66116 * 179.81331 * 19 18 17 25 25 C 1.43988 * 105.53586 * 343.13743 * 24 19 18 26 26 O 1.36519 * 131.48180 * 180.02562 * 18 17 16 27 27 H 1.09003 * 109.47027 * 299.99623 * 1 2 3 28 28 H 1.08998 * 109.47414 * 59.99823 * 1 2 3 29 29 H 1.08998 * 109.46926 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46945 * 60.00648 * 3 2 1 31 31 H 1.08992 * 109.47323 * 300.00260 * 3 2 1 32 32 H 1.09007 * 109.47262 * 308.07138 * 4 3 2 33 33 H 1.09004 * 109.46842 * 188.08189 * 4 3 2 34 34 H 1.09006 * 109.47539 * 47.99899 * 6 5 4 35 35 H 1.08999 * 109.47172 * 167.99564 * 6 5 4 36 36 H 0.96992 * 119.99507 * 180.02562 * 10 9 7 37 37 H 1.09000 * 109.46843 * 44.66866 * 15 5 4 38 38 H 1.08994 * 109.47394 * 284.65879 * 15 5 4 39 39 H 1.07997 * 119.93553 * 0.04365 * 17 16 15 40 40 H 1.09005 * 109.46678 * 60.00169 * 22 21 20 41 41 H 1.09003 * 109.47351 * 179.97438 * 22 21 20 42 42 H 1.08997 * 109.47644 * 300.00426 * 22 21 20 43 43 H 1.07998 * 119.95766 * 0.02562 * 23 16 15 44 44 H 1.09001 * 110.57795 * 268.29541 * 25 24 19 45 45 H 1.09000 * 110.70907 * 145.46311 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9822 0.6307 -1.2857 6 6 5.3871 0.9718 -1.5460 7 6 5.4950 2.4379 -1.8779 8 1 4.6169 3.0657 -1.8419 9 6 6.7146 2.9777 -2.2274 10 7 6.8088 4.2573 -2.5165 11 14 8.2332 1.8917 -2.2902 12 1 8.3760 1.3189 -3.6527 13 1 9.4347 2.7016 -1.9652 14 1 8.0961 0.7914 -1.3025 15 6 3.7761 -0.8230 -1.3324 16 6 3.8821 -1.2997 -2.7581 17 6 2.7535 -1.3465 -3.5551 18 6 2.8458 -1.7849 -4.8672 19 6 4.0784 -2.1723 -5.3830 20 6 5.2089 -2.1290 -4.5766 21 8 6.4151 -2.5120 -5.0745 22 6 7.5356 -2.4357 -4.1909 23 6 5.1074 -1.6893 -3.2652 24 8 3.9059 -2.5628 -6.6805 25 6 2.4918 -2.7883 -6.8307 26 8 1.9012 -1.9227 -5.8431 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.6886 1.8464 0.8901 31 1 1.6886 1.8464 -0.8899 32 1 3.8480 0.5240 0.8082 33 1 3.9780 2.1703 0.1438 34 1 5.9839 0.7550 -0.6600 35 1 5.7549 0.3814 -2.3852 36 1 7.6667 4.6369 -2.7627 37 1 2.7870 -1.0624 -0.9420 38 1 4.5354 -1.3174 -0.7266 39 1 1.7981 -1.0409 -3.1549 40 1 7.3598 -3.0746 -3.3253 41 1 8.4328 -2.7696 -4.7121 42 1 7.6687 -1.4055 -3.8609 43 1 5.9867 -1.6519 -2.6392 44 1 2.2457 -3.8298 -6.6234 45 1 2.1611 -2.5095 -7.8312 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093099875.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:28 Heat of formation + Delta-G solvation = -98.049607 kcal Electronic energy + Delta-G solvation = -28685.455072 eV Core-core repulsion = 24670.682977 eV Total energy + Delta-G solvation = -4014.772095 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.98069 -39.43675 -38.26062 -37.15808 -36.00276 -35.59380 -32.52164 -31.00834 -29.75823 -29.35724 -27.94288 -26.95968 -26.29303 -25.58828 -24.21180 -22.46261 -22.02585 -21.67582 -19.97607 -18.05847 -17.76607 -17.42818 -16.92584 -16.60334 -16.19912 -15.81298 -15.71419 -15.35199 -15.04465 -14.93745 -14.45201 -14.18315 -14.12766 -13.91608 -13.52962 -13.16417 -12.81544 -12.77094 -12.61430 -12.39968 -12.08577 -11.89384 -11.69449 -11.48277 -11.38753 -11.27723 -11.18275 -11.06976 -10.73287 -10.60986 -10.33240 -10.11056 -9.85181 -9.34952 -9.27525 -8.58105 -8.05605 -7.76922 -7.39343 -6.06437 -4.02510 1.31544 1.53569 2.89036 3.23719 3.29111 3.30069 3.31729 3.57739 3.75084 4.04153 4.39106 4.71742 4.79123 4.90387 4.93820 5.00460 5.22916 5.25074 5.26788 5.31252 5.33876 5.37378 5.45743 5.54606 5.60974 5.67493 5.70318 5.72425 5.75410 5.82301 5.94148 6.20719 6.26529 6.27997 6.37960 6.50594 6.60838 6.79543 6.81530 6.93663 7.09443 7.39352 7.52593 7.60719 7.90650 7.99677 8.64864 9.02989 9.55692 11.07017 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.008084 B = 0.006213 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3462.915265 B = 4505.633679 C = 6940.239824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.390 6.390 3 C 0.066 3.934 4 C 0.064 3.936 5 N -0.517 5.517 6 C 0.155 3.845 7 C -0.505 4.505 8 H 0.081 0.919 9 C 0.069 3.931 10 N -0.899 5.899 11 Si 0.866 3.134 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.267 1.267 15 C 0.083 3.917 16 C -0.005 4.005 17 C -0.110 4.110 18 C 0.067 3.933 19 C -0.015 4.015 20 C 0.149 3.851 21 O -0.312 6.312 22 C 0.024 3.976 23 C -0.188 4.188 24 O -0.304 6.304 25 C 0.213 3.787 26 O -0.308 6.308 27 H 0.035 0.965 28 H 0.040 0.960 29 H 0.078 0.922 30 H 0.045 0.955 31 H 0.061 0.939 32 H 0.032 0.968 33 H 0.103 0.897 34 H -0.013 1.013 35 H 0.030 0.970 36 H 0.263 0.737 37 H 0.107 0.893 38 H 0.033 0.967 39 H 0.137 0.863 40 H 0.056 0.944 41 H 0.100 0.900 42 H 0.060 0.940 43 H 0.139 0.861 44 H 0.078 0.922 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.320 -15.084 0.219 17.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.309 6.309 3 C -0.011 4.011 4 C -0.064 4.064 5 N -0.241 5.241 6 C 0.029 3.971 7 C -0.543 4.543 8 H 0.099 0.901 9 C -0.132 4.132 10 N -0.539 5.539 11 Si 0.693 3.307 12 H -0.200 1.200 13 H -0.211 1.211 14 H -0.192 1.192 15 C -0.045 4.045 16 C -0.006 4.006 17 C -0.130 4.130 18 C 0.023 3.977 19 C -0.059 4.059 20 C 0.103 3.897 21 O -0.226 6.226 22 C -0.071 4.071 23 C -0.207 4.207 24 O -0.221 6.221 25 C 0.101 3.899 26 O -0.224 6.224 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.097 0.903 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.050 0.950 33 H 0.122 0.878 34 H 0.005 0.995 35 H 0.048 0.952 36 H 0.073 0.927 37 H 0.125 0.875 38 H 0.051 0.949 39 H 0.155 0.845 40 H 0.075 0.925 41 H 0.118 0.882 42 H 0.078 0.922 43 H 0.157 0.843 44 H 0.096 0.904 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.364 -14.896 -0.593 17.094 hybrid contribution 1.294 -0.496 0.413 1.446 sum -7.070 -15.393 -0.180 16.940 Atomic orbital electron populations 1.22669 0.82187 1.02012 0.99682 1.87828 1.18802 1.29032 1.95258 1.22748 0.94378 0.83930 0.99999 1.22098 0.92258 1.01747 0.90293 1.61891 1.23587 1.07940 1.30690 1.20324 0.83581 0.98182 0.95027 1.21013 0.95947 0.91777 1.45550 0.90127 1.24874 0.98503 0.94792 0.95043 1.69883 1.25223 1.11653 1.47092 0.86994 0.83539 0.81301 0.78841 1.20017 1.21130 1.19207 1.21332 1.02940 0.89961 0.90218 1.19382 0.90775 0.93887 0.96549 1.19783 1.00322 1.04281 0.88565 1.19430 0.85658 1.01796 0.90813 1.18668 0.93356 1.09469 0.84405 1.17726 0.83527 0.98016 0.90445 1.86106 1.14344 1.81621 1.40495 1.23128 0.87140 1.02323 0.94528 1.20979 0.99480 1.06443 0.93805 1.87380 1.25227 1.84990 1.24474 1.25520 0.75660 0.94539 0.94183 1.87349 1.38326 1.66259 1.30473 0.94675 0.94181 0.90299 0.93717 0.92119 0.95007 0.87848 0.99508 0.95210 0.92700 0.87480 0.94878 0.84507 0.92496 0.88151 0.92177 0.84333 0.90420 0.85570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.39 -5.55 7.93 -35.23 -0.28 -5.83 16 3 C 0.07 0.99 6.25 37.16 0.23 1.23 16 4 C 0.06 1.14 5.35 -3.83 -0.02 1.12 16 5 N -0.52 -10.37 4.32 -237.52 -1.03 -11.39 16 6 C 0.15 3.61 3.62 -4.98 -0.02 3.60 16 7 C -0.50 -13.97 8.93 -34.44 -0.31 -14.27 16 8 H 0.08 2.43 7.87 -52.48 -0.41 2.01 16 9 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 10 N -0.90 -27.31 13.96 55.43 0.77 -26.53 16 11 Si 0.87 20.98 27.40 -169.99 -4.66 16.32 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.27 -6.08 6.64 56.52 0.38 -5.70 16 15 C 0.08 1.42 4.92 -4.97 -0.02 1.39 16 16 C 0.00 -0.09 5.07 -104.63 -0.53 -0.62 16 17 C -0.11 -1.85 9.71 -39.43 -0.38 -2.23 16 18 C 0.07 1.15 7.15 -39.11 -0.28 0.87 16 19 C -0.01 -0.26 7.09 -39.00 -0.28 -0.54 16 20 C 0.15 2.67 6.69 -39.16 -0.26 2.40 16 21 O -0.31 -5.33 10.50 -19.73 -0.21 -5.54 16 22 C 0.02 0.32 9.81 101.05 0.99 1.31 16 23 C -0.19 -3.27 7.05 -39.43 -0.28 -3.55 16 24 O -0.30 -5.02 11.40 -46.29 -0.53 -5.55 16 25 C 0.21 2.57 8.90 101.05 0.90 3.47 16 26 O -0.31 -4.72 11.40 -45.75 -0.52 -5.24 16 27 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.03 0.53 7.96 -51.93 -0.41 0.12 16 33 H 0.10 2.02 6.99 -51.93 -0.36 1.65 16 34 H -0.01 -0.30 7.34 -51.93 -0.38 -0.68 16 35 H 0.03 0.70 4.58 -51.93 -0.24 0.47 16 36 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 37 H 0.11 1.71 5.09 -51.93 -0.26 1.45 16 38 H 0.03 0.55 8.00 -51.93 -0.42 0.13 16 39 H 0.14 2.10 8.06 -52.49 -0.42 1.68 16 40 H 0.06 0.64 7.66 -51.93 -0.40 0.25 16 41 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.06 0.89 7.66 -51.93 -0.40 0.49 16 43 H 0.14 2.28 5.80 -52.49 -0.30 1.97 16 44 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.13 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 365.25 15.07 5.50 5.50 Total: -1.00 -33.13 365.25 -6.74 -39.87 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -6.55 Total: 0.89 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: 0.76 Total: -2.49 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: -0.25 Total: -37.93 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -1.54 Total: -22.16 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.66 Total: 16.32 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.13 -6.74 -39.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093099875.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.184 kcal (2) G-P(sol) polarization free energy of solvation -33.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds