Wall clock time and date at job start Tue Mar 31 2020 14:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00020 * 2 1 4 4 C 1.52998 * 109.47085 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47355 * 64.99756 * 4 3 2 6 6 C 1.46506 * 120.00243 * 269.99976 * 5 4 3 7 7 C 1.50700 * 109.47177 * 269.99976 * 6 5 4 8 8 H 1.07997 * 119.99865 * 0.02562 * 7 6 5 9 9 C 1.37876 * 119.99725 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00227 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99893 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47251 * 59.99509 * 11 9 7 13 13 H 1.48497 * 109.47240 * 179.97438 * 11 9 7 14 14 H 1.48506 * 109.47172 * 299.99782 * 11 9 7 15 15 C 1.34777 * 120.00004 * 90.00302 * 5 4 3 16 16 O 1.21282 * 120.00380 * 180.02562 * 15 5 4 17 17 C 1.50701 * 119.99901 * 359.97438 * 15 5 4 18 18 O 1.42898 * 109.47123 * 179.97438 * 17 15 5 19 19 C 1.35993 * 117.00126 * 180.02562 * 18 17 15 20 20 C 1.38570 * 120.07150 * 0.27756 * 19 18 17 21 21 C 1.38244 * 119.99485 * 180.27403 * 20 19 18 22 22 C 1.38248 * 120.15181 * 359.72506 * 21 20 19 23 23 C 1.38243 * 120.14349 * 359.97438 * 22 21 20 24 24 C 1.38565 * 120.00269 * 0.02562 * 23 22 21 25 25 O 1.35987 * 120.07608 * 180.02562 * 24 23 22 26 26 C 1.42905 * 117.00096 * 359.97438 * 25 24 23 27 27 H 1.09002 * 109.47045 * 299.99928 * 1 2 3 28 28 H 1.09002 * 109.47381 * 59.99833 * 1 2 3 29 29 H 1.09000 * 109.47178 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47007 * 60.00076 * 3 2 1 31 31 H 1.09004 * 109.46827 * 300.00019 * 3 2 1 32 32 H 1.09009 * 109.46870 * 304.99758 * 4 3 2 33 33 H 1.09002 * 109.47424 * 185.00201 * 4 3 2 34 34 H 1.09000 * 109.46803 * 30.00235 * 6 5 4 35 35 H 1.09005 * 109.46872 * 149.99876 * 6 5 4 36 36 H 0.97004 * 120.00507 * 180.02562 * 10 9 7 37 37 H 1.09001 * 109.46790 * 60.00522 * 17 15 5 38 38 H 1.08997 * 109.46991 * 300.00194 * 17 15 5 39 39 H 1.07992 * 120.00311 * 0.02562 * 20 19 18 40 40 H 1.07998 * 119.92090 * 179.74527 * 21 20 19 41 41 H 1.08001 * 119.92720 * 180.02562 * 22 21 20 42 42 H 1.08006 * 119.99913 * 180.02562 * 23 22 21 43 43 H 1.09001 * 109.47103 * 300.00410 * 26 25 24 44 44 H 1.09004 * 109.47054 * 59.99914 * 26 25 24 45 45 H 1.09000 * 109.47187 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2526 6 6 4.1052 -0.8922 -1.3427 7 6 5.5010 -1.2979 -0.9448 8 1 6.2195 -0.5460 -0.6536 9 6 5.8606 -2.6289 -0.9526 10 7 4.9854 -3.5444 -1.3067 11 14 7.5905 -3.1319 -0.4588 12 1 7.8529 -2.6975 0.9368 13 1 7.7218 -4.6082 -0.5501 14 1 8.5718 -2.4898 -1.3699 15 6 4.2616 1.3337 -2.3217 16 8 4.6256 0.8202 -3.3584 17 6 4.1278 2.8319 -2.2293 18 8 4.4852 3.4201 -3.4816 19 6 4.4189 4.7757 -3.5683 20 6 4.0242 5.5232 -2.4703 21 6 3.9519 6.9007 -2.5618 22 6 4.2781 7.5360 -3.7456 23 6 4.6786 6.7966 -4.8429 24 6 4.7532 5.4156 -4.7579 25 8 5.1474 4.6868 -5.8362 26 6 5.4695 5.4103 -7.0257 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.6886 1.8463 0.8899 31 1 1.6886 1.8464 -0.8900 32 1 3.8514 0.5682 0.8410 33 1 3.9786 2.1765 0.0890 34 1 3.3852 -1.3630 -0.6733 35 1 3.9120 -1.2115 -2.3668 36 1 5.2383 -4.4809 -1.3119 37 1 4.7898 3.2083 -1.4495 38 1 3.0970 3.0903 -1.9870 39 1 3.7693 5.0295 -1.5443 40 1 3.6402 7.4818 -1.7066 41 1 4.2208 8.6124 -3.8130 42 1 4.9333 7.2954 -5.7664 43 1 4.5966 5.9735 -7.3560 44 1 6.2898 6.0985 -6.8215 45 1 5.7682 4.7111 -7.8067 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103214761.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:17 Heat of formation + Delta-G solvation = -113.604079 kcal Electronic energy + Delta-G solvation = -27628.407795 eV Core-core repulsion = 23612.961208 eV Total energy + Delta-G solvation = -4015.446587 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.63192 -39.32946 -38.18815 -37.46472 -36.75989 -34.82917 -32.66955 -30.49837 -30.45222 -29.63831 -28.54834 -27.29901 -26.49388 -25.90202 -23.01907 -22.75613 -22.37535 -21.83014 -18.85853 -18.54532 -17.38035 -16.80215 -16.54355 -16.41082 -16.16642 -15.92417 -15.51204 -15.41909 -15.10814 -14.86611 -14.71517 -14.66263 -14.22455 -13.82409 -13.62734 -13.04700 -12.70234 -12.66669 -12.27411 -12.15051 -11.95751 -11.88787 -11.69136 -11.35461 -11.28297 -11.23507 -11.20620 -11.02868 -10.88965 -10.78557 -10.39016 -10.09022 -9.57422 -9.46535 -8.89761 -8.89071 -8.33153 -7.88148 -7.65637 -5.94688 -3.99051 1.13746 1.32486 2.94024 3.21249 3.30822 3.37942 3.42108 3.46240 3.60357 3.98992 4.07004 4.51978 4.62962 4.72313 4.82269 4.94029 4.95787 5.03790 5.05811 5.14356 5.23994 5.28153 5.28544 5.38927 5.39270 5.41941 5.45254 5.49220 5.53227 5.56004 5.60634 5.84555 6.03163 6.10889 6.17376 6.32835 6.52777 6.98059 7.22729 7.37209 7.54773 7.56622 7.63734 8.02275 8.33317 8.41086 8.94806 9.09709 9.64691 11.13383 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.011431 B = 0.003486 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.971436 B = 8031.313171 C = 9559.730866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.369 6.369 3 C 0.042 3.958 4 C 0.108 3.892 5 N -0.586 5.586 6 C 0.252 3.748 7 C -0.528 4.528 8 H 0.055 0.945 9 C 0.062 3.938 10 N -0.893 5.893 11 Si 0.896 3.104 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.505 3.495 16 O -0.512 6.512 17 C 0.039 3.961 18 O -0.274 6.274 19 C 0.107 3.893 20 C -0.178 4.178 21 C -0.117 4.117 22 C -0.124 4.124 23 C -0.175 4.175 24 C 0.100 3.900 25 O -0.300 6.300 26 C 0.027 3.973 27 H 0.035 0.965 28 H 0.036 0.964 29 H 0.085 0.915 30 H 0.053 0.947 31 H 0.043 0.957 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.049 0.951 35 H 0.040 0.960 36 H 0.263 0.737 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.135 0.865 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.133 0.867 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.676 22.621 -0.648 23.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.288 6.288 3 C -0.036 4.036 4 C -0.017 4.017 5 N -0.319 5.319 6 C 0.134 3.866 7 C -0.567 4.567 8 H 0.074 0.926 9 C -0.140 4.140 10 N -0.532 5.532 11 Si 0.724 3.276 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.202 1.202 15 C 0.289 3.711 16 O -0.387 6.387 17 C -0.040 4.040 18 O -0.186 6.186 19 C 0.060 3.940 20 C -0.197 4.197 21 C -0.135 4.135 22 C -0.142 4.142 23 C -0.194 4.194 24 C 0.054 3.946 25 O -0.213 6.213 26 C -0.068 4.068 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.103 0.897 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.115 0.885 33 H 0.097 0.903 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.153 0.847 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.151 0.849 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.305 21.569 -1.417 22.516 hybrid contribution 0.620 0.333 0.486 0.855 sum -5.684 21.902 -0.931 22.646 Atomic orbital electron populations 1.22712 0.81929 1.02707 0.99136 1.88110 1.18813 1.26709 1.95127 1.23126 0.95238 0.85675 0.99552 1.21578 0.91325 0.98940 0.89857 1.48120 1.64609 1.09861 1.09311 1.19352 0.96854 0.71336 0.99077 1.21431 0.97442 0.92271 1.45594 0.92626 1.24906 0.97367 0.96386 0.95331 1.69933 1.34360 1.01016 1.47895 0.86590 0.84820 0.77282 0.78885 1.20314 1.21230 1.20233 1.19708 0.79673 0.86812 0.84888 1.90734 1.44838 1.74137 1.28978 1.22758 1.01030 0.94313 0.85907 1.86325 1.82759 1.15811 1.33741 1.18425 0.99769 0.83370 0.92390 1.21120 1.05833 0.94991 0.97760 1.20830 1.01056 0.93572 0.98068 1.20806 1.01017 0.99674 0.92729 1.21049 1.06123 0.91487 1.00695 1.18313 0.99909 0.89712 0.86658 1.86294 1.81337 1.34499 1.19159 1.23066 0.99803 0.98119 0.85836 0.94643 0.94552 0.89677 0.92851 0.93832 0.88459 0.90286 0.93323 0.94155 0.92761 0.89650 0.90018 0.84734 0.85645 0.85776 0.84907 0.92890 0.92867 0.88129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.37 -6.23 9.53 -35.23 -0.34 -6.57 16 3 C 0.04 0.57 6.28 37.16 0.23 0.81 16 4 C 0.11 1.68 5.62 -4.05 -0.02 1.66 16 5 N -0.59 -12.57 2.42 -175.05 -0.42 -12.99 16 6 C 0.25 6.79 4.98 -5.19 -0.03 6.77 16 7 C -0.53 -15.34 9.39 -34.44 -0.32 -15.67 16 8 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 9 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 10 N -0.89 -27.24 13.29 55.43 0.74 -26.50 16 11 Si 0.90 22.37 29.54 -169.99 -5.02 17.35 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 14 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 15 C 0.50 11.06 7.75 -10.98 -0.09 10.97 16 16 O -0.51 -14.03 16.08 -14.36 -0.23 -14.26 16 17 C 0.04 0.62 3.77 36.01 0.14 0.76 16 18 O -0.27 -5.08 9.45 -47.34 -0.45 -5.52 16 19 C 0.11 1.61 6.70 -39.12 -0.26 1.35 16 20 C -0.18 -2.06 9.04 -39.46 -0.36 -2.41 16 21 C -0.12 -1.12 10.04 -39.58 -0.40 -1.52 16 22 C -0.12 -1.16 10.04 -39.58 -0.40 -1.55 16 23 C -0.17 -1.86 9.04 -39.46 -0.36 -2.22 16 24 C 0.10 1.42 6.70 -39.12 -0.26 1.16 16 25 O -0.30 -4.56 10.28 -34.20 -0.35 -4.91 16 26 C 0.03 0.26 9.81 101.05 0.99 1.25 16 27 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.04 0.56 7.30 -51.93 -0.38 0.18 16 32 H 0.10 1.62 8.07 -51.92 -0.42 1.20 16 33 H 0.08 0.92 6.44 -51.93 -0.33 0.58 16 34 H 0.05 1.35 7.11 -51.93 -0.37 0.98 16 35 H 0.04 1.24 7.42 -51.93 -0.39 0.86 16 36 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 37 H 0.09 1.12 6.91 -51.93 -0.36 0.77 16 38 H 0.08 1.04 6.79 -51.93 -0.35 0.69 16 39 H 0.13 1.26 6.30 -52.49 -0.33 0.92 16 40 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 41 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 42 H 0.13 1.06 6.30 -52.48 -0.33 0.73 16 43 H 0.05 0.40 7.66 -51.93 -0.40 0.01 16 44 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 45 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 378.44 15.07 5.70 5.70 Total: -1.00 -38.29 378.44 -7.04 -45.33 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -6.56 Total: -2.23 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: -0.11 Total: 4.59 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: 0.31 Total: -39.49 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -1.37 Total: -31.26 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -38.29 -7.04 -45.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103214761.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.271 kcal (2) G-P(sol) polarization free energy of solvation -38.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds