Wall clock time and date at job start Tue Mar 31 2020 14:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00020 * 2 1 4 4 C 1.52998 * 109.47085 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47355 * 64.99756 * 4 3 2 6 6 C 1.46506 * 120.00243 * 269.99976 * 5 4 3 7 7 C 1.50700 * 109.47177 * 269.99976 * 6 5 4 8 8 H 1.07997 * 119.99865 * 0.02562 * 7 6 5 9 9 C 1.37876 * 119.99725 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00227 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99893 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47251 * 59.99509 * 11 9 7 13 13 H 1.48497 * 109.47240 * 179.97438 * 11 9 7 14 14 H 1.48506 * 109.47172 * 299.99782 * 11 9 7 15 15 C 1.34777 * 120.00004 * 90.00302 * 5 4 3 16 16 O 1.21282 * 120.00380 * 180.02562 * 15 5 4 17 17 C 1.50701 * 119.99901 * 359.97438 * 15 5 4 18 18 O 1.42898 * 109.47123 * 179.97438 * 17 15 5 19 19 C 1.35993 * 117.00126 * 180.02562 * 18 17 15 20 20 C 1.38570 * 120.07150 * 0.27756 * 19 18 17 21 21 C 1.38244 * 119.99485 * 180.27403 * 20 19 18 22 22 C 1.38248 * 120.15181 * 359.72506 * 21 20 19 23 23 C 1.38243 * 120.14349 * 359.97438 * 22 21 20 24 24 C 1.38565 * 120.00269 * 0.02562 * 23 22 21 25 25 O 1.35987 * 120.07608 * 180.02562 * 24 23 22 26 26 C 1.42905 * 117.00096 * 359.97438 * 25 24 23 27 27 H 1.09002 * 109.47045 * 299.99928 * 1 2 3 28 28 H 1.09002 * 109.47381 * 59.99833 * 1 2 3 29 29 H 1.09000 * 109.47178 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47007 * 60.00076 * 3 2 1 31 31 H 1.09004 * 109.46827 * 300.00019 * 3 2 1 32 32 H 1.09009 * 109.46870 * 304.99758 * 4 3 2 33 33 H 1.09002 * 109.47424 * 185.00201 * 4 3 2 34 34 H 1.09000 * 109.46803 * 30.00235 * 6 5 4 35 35 H 1.09005 * 109.46872 * 149.99876 * 6 5 4 36 36 H 0.97004 * 120.00507 * 180.02562 * 10 9 7 37 37 H 1.09001 * 109.46790 * 60.00522 * 17 15 5 38 38 H 1.08997 * 109.46991 * 300.00194 * 17 15 5 39 39 H 1.07992 * 120.00311 * 0.02562 * 20 19 18 40 40 H 1.07998 * 119.92090 * 179.74527 * 21 20 19 41 41 H 1.08001 * 119.92720 * 180.02562 * 22 21 20 42 42 H 1.08006 * 119.99913 * 180.02562 * 23 22 21 43 43 H 1.09001 * 109.47103 * 300.00410 * 26 25 24 44 44 H 1.09004 * 109.47054 * 59.99914 * 26 25 24 45 45 H 1.09000 * 109.47187 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2526 6 6 4.1052 -0.8922 -1.3427 7 6 5.5010 -1.2979 -0.9448 8 1 6.2195 -0.5460 -0.6536 9 6 5.8606 -2.6289 -0.9526 10 7 4.9854 -3.5444 -1.3067 11 14 7.5905 -3.1319 -0.4588 12 1 7.8529 -2.6975 0.9368 13 1 7.7218 -4.6082 -0.5501 14 1 8.5718 -2.4898 -1.3699 15 6 4.2616 1.3337 -2.3217 16 8 4.6256 0.8202 -3.3584 17 6 4.1278 2.8319 -2.2293 18 8 4.4852 3.4201 -3.4816 19 6 4.4189 4.7757 -3.5683 20 6 4.0242 5.5232 -2.4703 21 6 3.9519 6.9007 -2.5618 22 6 4.2781 7.5360 -3.7456 23 6 4.6786 6.7966 -4.8429 24 6 4.7532 5.4156 -4.7579 25 8 5.1474 4.6868 -5.8362 26 6 5.4695 5.4103 -7.0257 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.6886 1.8463 0.8899 31 1 1.6886 1.8464 -0.8900 32 1 3.8514 0.5682 0.8410 33 1 3.9786 2.1765 0.0890 34 1 3.3852 -1.3630 -0.6733 35 1 3.9120 -1.2115 -2.3668 36 1 5.2383 -4.4809 -1.3119 37 1 4.7898 3.2083 -1.4495 38 1 3.0970 3.0903 -1.9870 39 1 3.7693 5.0295 -1.5443 40 1 3.6402 7.4818 -1.7066 41 1 4.2208 8.6124 -3.8130 42 1 4.9333 7.2954 -5.7664 43 1 4.5966 5.9735 -7.3560 44 1 6.2898 6.0985 -6.8215 45 1 5.7682 4.7111 -7.8067 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103214761.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:17 Heat of formation + Delta-G solvation = -140.743555 kcal Electronic energy + Delta-G solvation = -27629.584651 eV Core-core repulsion = 23612.961208 eV Total energy + Delta-G solvation = -4016.623443 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.64408 -40.76789 -39.32109 -38.70030 -37.71135 -36.55922 -34.82101 -31.66066 -31.26196 -31.02566 -29.90407 -28.17867 -28.06211 -27.08854 -24.84676 -24.00994 -23.22794 -22.95484 -20.19886 -19.75548 -18.65219 -18.37348 -18.06786 -17.58364 -17.39947 -17.04080 -16.90264 -16.64389 -16.39005 -16.12251 -15.84515 -15.62157 -15.53691 -15.17870 -14.90091 -14.33623 -14.25933 -13.71866 -13.53616 -13.49335 -13.27496 -13.05708 -12.97928 -12.85589 -12.72643 -12.55922 -12.24883 -12.19474 -12.14127 -11.99284 -11.98182 -11.89223 -11.70305 -10.67761 -10.61969 -10.51665 -9.70151 -9.48375 -8.81063 -8.19438 -6.34408 0.33652 0.48611 1.35950 1.41609 1.48156 1.66153 1.69759 2.38660 2.42578 2.68731 2.79580 2.97744 3.10342 3.46528 3.81732 3.92084 4.01039 4.07304 4.14415 4.19439 4.31779 4.32180 4.38078 4.42412 4.46015 4.50026 4.53348 4.55255 4.62006 4.70198 4.78167 4.88025 4.94946 5.15704 5.24878 5.27967 5.37497 5.55602 5.56361 5.79843 5.84837 6.08903 6.09782 6.35401 6.62360 6.72321 6.76365 7.26796 7.41557 8.87959 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.011431 B = 0.003486 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.971436 B = 8031.313171 C = 9559.730866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.418 6.418 3 C 0.042 3.958 4 C 0.098 3.902 5 N -0.588 5.588 6 C 0.273 3.727 7 C -0.547 4.547 8 H 0.055 0.945 9 C 0.006 3.994 10 N -0.929 5.929 11 Si 0.969 3.031 12 H -0.257 1.257 13 H -0.278 1.278 14 H -0.280 1.280 15 C 0.493 3.507 16 O -0.587 6.587 17 C 0.055 3.945 18 O -0.320 6.320 19 C 0.063 3.937 20 C -0.175 4.175 21 C -0.114 4.114 22 C -0.117 4.117 23 C -0.173 4.173 24 C 0.067 3.933 25 O -0.346 6.346 26 C 0.019 3.981 27 H 0.065 0.935 28 H 0.042 0.958 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.052 0.948 32 H 0.084 0.916 33 H 0.129 0.871 34 H 0.035 0.965 35 H -0.015 1.015 36 H 0.266 0.734 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.158 0.842 40 H 0.162 0.838 41 H 0.160 0.840 42 H 0.156 0.844 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.758 26.680 1.644 27.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.338 6.338 3 C -0.035 4.035 4 C -0.024 4.024 5 N -0.319 5.319 6 C 0.152 3.848 7 C -0.585 4.585 8 H 0.073 0.927 9 C -0.193 4.193 10 N -0.568 5.568 11 Si 0.793 3.207 12 H -0.181 1.181 13 H -0.203 1.203 14 H -0.205 1.205 15 C 0.280 3.720 16 O -0.467 6.467 17 C -0.023 4.023 18 O -0.234 6.234 19 C 0.018 3.982 20 C -0.193 4.193 21 C -0.132 4.132 22 C -0.134 4.134 23 C -0.192 4.192 24 C 0.022 3.978 25 O -0.260 6.260 26 C -0.075 4.075 27 H 0.084 0.916 28 H 0.061 0.939 29 H 0.097 0.903 30 H 0.118 0.882 31 H 0.070 0.930 32 H 0.102 0.898 33 H 0.147 0.853 34 H 0.052 0.948 35 H 0.003 0.997 36 H 0.075 0.925 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.176 0.824 40 H 0.179 0.821 41 H 0.177 0.823 42 H 0.174 0.826 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.421 25.691 0.929 26.498 hybrid contribution 0.577 -0.805 -0.259 1.024 sum -5.844 24.887 0.670 25.572 Atomic orbital electron populations 1.22850 0.80034 1.03033 1.00854 1.88049 1.21151 1.29056 1.95537 1.23241 0.93227 0.84941 1.02113 1.22047 0.93503 1.00578 0.86291 1.48061 1.64272 1.07897 1.11709 1.18673 0.95766 0.75236 0.95091 1.21747 0.98278 0.92746 1.45746 0.92665 1.25890 1.01969 0.96368 0.95073 1.70073 1.36662 1.01437 1.48670 0.85461 0.78842 0.77152 0.79287 1.18086 1.20306 1.20538 1.20840 0.77887 0.89657 0.83584 1.90686 1.48145 1.76093 1.31733 1.22641 1.04039 0.89134 0.86437 1.86244 1.84088 1.18308 1.34797 1.18901 1.02872 0.82108 0.94318 1.21455 1.04640 0.95887 0.97360 1.21306 0.99607 0.92941 0.99306 1.21319 0.98780 1.01394 0.91956 1.21384 1.05361 0.90082 1.02359 1.18803 1.01310 0.91162 0.86510 1.86221 1.82011 1.36959 1.20833 1.23311 1.01194 0.98526 0.84443 0.91649 0.93916 0.90282 0.88190 0.92957 0.89778 0.85287 0.94751 0.99729 0.92490 0.86192 0.86187 0.82419 0.82077 0.82289 0.82646 0.91092 0.91191 0.87746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 11.01 113.37 1.25 1.93 16 2 O -0.42 -14.03 9.53 -148.98 -1.42 -15.45 16 3 C 0.04 1.04 6.28 71.98 0.45 1.49 16 4 C 0.10 2.90 5.62 86.38 0.49 3.39 16 5 N -0.59 -25.95 2.42 -826.14 -2.00 -27.95 16 6 C 0.27 15.69 4.98 85.63 0.43 16.11 16 7 C -0.55 -33.03 9.39 25.60 0.24 -32.79 16 8 H 0.06 3.25 7.81 -2.91 -0.02 3.23 16 9 C 0.01 0.35 5.46 84.65 0.46 0.81 16 10 N -0.93 -58.92 13.29 21.45 0.28 -58.63 16 11 Si 0.97 46.72 29.54 68.60 2.03 48.74 16 12 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 13 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 14 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 15 C 0.49 22.39 7.75 87.66 0.68 23.07 16 16 O -0.59 -34.63 16.08 16.00 0.26 -34.37 16 17 C 0.06 1.71 3.77 71.24 0.27 1.98 16 18 O -0.32 -12.14 9.45 -67.05 -0.63 -12.77 16 19 C 0.06 1.87 6.70 22.57 0.15 2.02 16 20 C -0.17 -3.47 9.04 22.35 0.20 -3.27 16 21 C -0.11 -1.65 10.04 22.27 0.22 -1.43 16 22 C -0.12 -1.68 10.04 22.27 0.22 -1.45 16 23 C -0.17 -3.30 9.04 22.35 0.20 -3.10 16 24 C 0.07 1.91 6.70 22.57 0.15 2.06 16 25 O -0.35 -11.00 10.28 -79.53 -0.82 -11.82 16 26 C 0.02 0.37 9.81 113.37 1.11 1.48 16 27 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.05 1.20 7.30 -2.39 -0.02 1.18 16 32 H 0.08 2.73 8.07 -2.38 -0.02 2.71 16 33 H 0.13 2.48 6.44 -2.39 -0.02 2.46 16 34 H 0.03 2.04 7.11 -2.39 -0.02 2.03 16 35 H -0.02 -1.04 7.42 -2.38 -0.02 -1.06 16 36 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 37 H 0.12 2.79 6.91 -2.39 -0.02 2.78 16 38 H 0.12 2.71 6.79 -2.39 -0.02 2.69 16 39 H 0.16 2.20 6.30 -2.91 -0.02 2.18 16 40 H 0.16 1.20 8.06 -2.91 -0.02 1.17 16 41 H 0.16 1.18 8.06 -2.91 -0.02 1.15 16 42 H 0.16 2.07 6.30 -2.91 -0.02 2.05 16 43 H 0.07 1.03 7.66 -2.39 -0.02 1.01 16 44 H 0.07 1.03 7.66 -2.38 -0.02 1.02 16 45 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -94.03 378.44 5.22 -88.82 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: 0.99 Total: 11.14 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: 6.53 Total: 12.30 kcal Atomic # 7 Polarization: -84.87 SS G_CDS: -1.71 Total: -86.58 kcal Atomic # 8 Polarization: -71.80 SS G_CDS: -2.61 Total: -74.41 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.74 kcal Total: -94.03 5.22 -88.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103214761.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.927 kcal (2) G-P(sol) polarization free energy of solvation -94.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds