Wall clock time and date at job start Tue Mar 31 2020 14:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42896 * 114.00272 * 2 1 4 4 C 1.53000 * 109.47362 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47239 * 65.00375 * 4 3 2 6 6 C 1.46505 * 119.99724 * 270.00128 * 5 4 3 7 7 C 1.50697 * 109.46962 * 269.99913 * 6 5 4 8 8 H 1.08008 * 119.99924 * 359.97438 * 7 6 5 9 9 C 1.37875 * 119.99913 * 180.02562 * 7 6 5 10 10 N 1.31521 * 119.99832 * 180.02562 * 9 7 6 11 11 Si 1.86796 * 120.00217 * 359.97438 * 9 7 6 12 12 H 1.48499 * 109.47160 * 90.00150 * 11 9 7 13 13 H 1.48498 * 109.47396 * 210.00644 * 11 9 7 14 14 H 1.48505 * 109.47040 * 330.00656 * 11 9 7 15 15 C 1.34778 * 120.00128 * 89.99660 * 5 4 3 16 16 O 1.21281 * 119.99673 * 0.02562 * 15 5 4 17 17 C 1.50698 * 119.99750 * 180.02562 * 15 5 4 18 18 O 1.42897 * 109.46946 * 180.02562 * 17 15 5 19 19 C 1.35898 * 117.00072 * 180.02562 * 18 17 15 20 20 C 1.38797 * 120.02645 * 0.02562 * 19 18 17 21 21 C 1.38153 * 120.05322 * 179.97438 * 20 19 18 22 22 C 1.38201 * 120.11049 * 359.97438 * 21 20 19 23 23 C 1.38750 * 120.05532 * 0.02562 * 22 21 20 24 24 O 1.35900 * 120.02845 * 180.02562 * 23 22 21 25 25 C 1.42890 * 116.99738 * 359.97389 * 24 23 22 26 26 C 1.38615 * 120.02764 * 179.97438 * 19 18 17 27 27 H 1.09003 * 109.47328 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47163 * 300.00023 * 1 2 3 29 29 H 1.09004 * 109.47486 * 60.00163 * 1 2 3 30 30 H 1.09003 * 109.46976 * 60.00029 * 3 2 1 31 31 H 1.09004 * 109.47644 * 300.00319 * 3 2 1 32 32 H 1.08995 * 109.47345 * 304.99957 * 4 3 2 33 33 H 1.09001 * 109.47086 * 185.00059 * 4 3 2 34 34 H 1.08998 * 109.47002 * 29.99856 * 6 5 4 35 35 H 1.08998 * 109.46791 * 149.99768 * 6 5 4 36 36 H 0.96995 * 119.99529 * 179.97438 * 10 9 7 37 37 H 1.08997 * 109.47251 * 60.00383 * 17 15 5 38 38 H 1.09003 * 109.46911 * 299.99942 * 17 15 5 39 39 H 1.07992 * 119.97014 * 0.02562 * 20 19 18 40 40 H 1.08000 * 119.94482 * 180.02562 * 21 20 19 41 41 H 1.08000 * 119.96932 * 180.02562 * 22 21 20 42 42 H 1.09005 * 109.47635 * 299.99955 * 25 24 23 43 43 H 1.08998 * 109.47326 * 60.00520 * 25 24 23 44 44 H 1.09007 * 109.47372 * 180.02562 * 25 24 23 45 45 H 1.08004 * 120.05142 * 359.74932 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.1052 -0.8921 -1.3428 7 6 5.5009 -1.2978 -0.9450 8 1 6.2198 -0.5459 -0.6545 9 6 5.8605 -2.6288 -0.9528 10 7 7.0785 -2.9830 -0.6051 11 14 4.6175 -3.9293 -1.4559 12 1 4.7020 -4.1543 -2.9213 13 1 4.9120 -5.1979 -0.7424 14 1 3.2500 -3.4694 -1.1038 15 6 4.2614 1.3338 -2.3218 16 8 4.1546 2.5396 -2.2471 17 6 4.7137 0.6957 -3.6100 18 8 4.9537 1.7115 -4.5861 19 6 5.3703 1.3020 -5.8130 20 6 5.5440 -0.0506 -6.0719 21 6 5.9671 -0.4675 -7.3192 22 6 6.2179 0.4604 -8.3123 23 6 6.0457 1.8135 -8.0585 24 8 6.2919 2.7255 -9.0355 25 6 6.7258 2.2204 -10.2998 26 6 5.6212 2.2346 -6.8074 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8515 0.5682 0.8409 33 1 3.9785 2.1764 0.0889 34 1 3.3852 -1.3629 -0.6735 35 1 3.9119 -1.2114 -2.3670 36 1 7.3313 -3.9194 -0.6103 37 1 3.9395 0.0193 -3.9719 38 1 5.6326 0.1360 -3.4351 39 1 5.3475 -0.7775 -5.2979 40 1 6.1013 -1.5204 -7.5189 41 1 6.5481 0.1319 -9.2866 42 1 7.6580 1.6703 -10.1709 43 1 5.9643 1.5546 -10.7058 44 1 6.8866 3.0510 -10.9872 45 1 5.4819 3.2871 -6.6093 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103215071.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:21 Heat of formation + Delta-G solvation = -118.863545 kcal Electronic energy + Delta-G solvation = -27496.657054 eV Core-core repulsion = 23480.982399 eV Total energy + Delta-G solvation = -4015.674655 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.42526 -39.56476 -38.61019 -37.47919 -36.22137 -35.07522 -32.63491 -31.17709 -30.46555 -29.42497 -28.11910 -27.58600 -27.03821 -25.88733 -22.91747 -22.61238 -22.50594 -21.48214 -18.78723 -18.57118 -17.16604 -16.89555 -16.57204 -16.18091 -16.09796 -16.00905 -15.84559 -15.66850 -15.32755 -15.16240 -14.78188 -14.27386 -14.16356 -13.66548 -13.55819 -13.13472 -12.75972 -12.62631 -12.51675 -12.23484 -12.14040 -11.95614 -11.78481 -11.66527 -11.56815 -11.31055 -11.04842 -10.89691 -10.76849 -10.63975 -10.57303 -10.27163 -9.66119 -9.53484 -9.17034 -8.74225 -8.44807 -8.05289 -7.86012 -6.23998 -4.26514 1.43137 1.48335 2.74409 3.13798 3.15543 3.25392 3.28931 3.36601 3.81375 4.00102 4.13366 4.25413 4.75187 4.91842 4.97110 5.00684 5.05686 5.08909 5.20224 5.25863 5.27048 5.32459 5.37575 5.41513 5.53528 5.55054 5.57409 5.59526 5.71734 5.73293 5.95806 5.97985 6.23823 6.26808 6.30458 6.41462 6.50911 6.56102 6.74763 7.20185 7.29925 7.34276 7.42709 7.55188 8.01194 8.34980 8.72476 8.83216 9.34943 10.88325 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.011190 B = 0.003621 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.620316 B = 7730.222783 C = 9265.189535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.380 6.380 3 C 0.046 3.954 4 C 0.124 3.876 5 N -0.579 5.579 6 C 0.207 3.793 7 C -0.547 4.547 8 H 0.079 0.921 9 C 0.078 3.922 10 N -0.889 5.889 11 Si 0.867 3.133 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.259 1.259 15 C 0.523 3.477 16 O -0.551 6.551 17 C 0.043 3.957 18 O -0.290 6.290 19 C 0.176 3.824 20 C -0.242 4.242 21 C -0.040 4.040 22 C -0.250 4.250 23 C 0.160 3.840 24 O -0.316 6.316 25 C 0.029 3.971 26 C -0.188 4.188 27 H 0.082 0.918 28 H 0.037 0.963 29 H 0.036 0.964 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.052 0.948 35 H 0.023 0.977 36 H 0.267 0.733 37 H 0.089 0.911 38 H 0.111 0.889 39 H 0.136 0.864 40 H 0.128 0.872 41 H 0.126 0.874 42 H 0.056 0.944 43 H 0.055 0.945 44 H 0.098 0.902 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.025 4.920 -11.754 14.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.299 6.299 3 C -0.031 4.031 4 C 0.001 3.999 5 N -0.310 5.310 6 C 0.086 3.914 7 C -0.585 4.585 8 H 0.097 0.903 9 C -0.125 4.125 10 N -0.526 5.526 11 Si 0.693 3.307 12 H -0.199 1.199 13 H -0.208 1.208 14 H -0.183 1.183 15 C 0.310 3.690 16 O -0.431 6.431 17 C -0.034 4.034 18 O -0.202 6.202 19 C 0.129 3.871 20 C -0.260 4.260 21 C -0.058 4.058 22 C -0.269 4.269 23 C 0.115 3.885 24 O -0.230 6.230 25 C -0.066 4.066 26 C -0.208 4.208 27 H 0.100 0.900 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.070 0.930 35 H 0.041 0.959 36 H 0.077 0.923 37 H 0.107 0.893 38 H 0.129 0.871 39 H 0.154 0.846 40 H 0.146 0.854 41 H 0.144 0.856 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.116 0.884 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -6.898 5.609 -11.588 14.606 hybrid contribution -0.602 -1.281 -0.336 1.455 sum -7.500 4.328 -11.924 14.736 Atomic orbital electron populations 1.22691 0.82006 1.02359 0.99427 1.88005 1.18834 1.27755 1.95278 1.23060 0.95129 0.84804 1.00146 1.21396 0.91008 1.00055 0.87457 1.47716 1.64206 1.08937 1.10143 1.19925 0.98595 0.75316 0.97529 1.21416 0.95904 0.93867 1.47344 0.90299 1.24855 0.95053 0.98266 0.94373 1.69895 1.18127 1.17576 1.47023 0.86975 0.82710 0.81797 0.79208 1.19912 1.20848 1.18334 1.19781 0.77625 0.86805 0.84827 1.90647 1.54108 1.14193 1.84116 1.22655 1.03808 0.89932 0.87035 1.86086 1.80589 1.34968 1.18517 1.18623 0.91814 0.91990 0.84630 1.21359 1.10205 0.94832 0.99646 1.20708 0.94071 0.99282 0.91720 1.21071 1.12500 0.92021 1.01337 1.18511 0.94227 0.87841 0.87970 1.86047 1.81954 1.34050 1.20916 1.23042 0.99314 1.01151 0.83110 1.19377 1.10954 1.00251 0.90170 0.89953 0.94485 0.94532 0.92791 0.93176 0.88901 0.88930 0.92987 0.95901 0.92324 0.89345 0.87095 0.84618 0.85431 0.85602 0.92574 0.92645 0.88366 0.84399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.38 -6.22 9.53 -35.23 -0.34 -6.55 16 3 C 0.05 0.71 6.28 37.16 0.23 0.94 16 4 C 0.12 2.19 5.81 -4.04 -0.02 2.16 16 5 N -0.58 -11.73 2.42 -175.06 -0.42 -12.15 16 6 C 0.21 4.52 3.85 -5.19 -0.02 4.50 16 7 C -0.55 -14.10 9.84 -34.44 -0.34 -14.44 16 8 H 0.08 2.28 8.06 -52.48 -0.42 1.85 16 9 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 10 N -0.89 -25.43 13.96 55.43 0.77 -24.66 16 11 Si 0.87 19.46 27.47 -169.99 -4.67 14.79 16 12 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 13 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 14 H -0.26 -5.60 6.54 56.52 0.37 -5.23 16 15 C 0.52 10.85 7.75 -10.99 -0.09 10.76 16 16 O -0.55 -12.55 16.08 -14.35 -0.23 -12.78 16 17 C 0.04 0.81 3.77 36.00 0.14 0.95 16 18 O -0.29 -5.50 9.67 -39.33 -0.38 -5.88 16 19 C 0.18 2.95 6.68 -39.24 -0.26 2.69 16 20 C -0.24 -3.68 9.04 -39.41 -0.36 -4.04 16 21 C -0.04 -0.52 10.04 -39.63 -0.40 -0.91 16 22 C -0.25 -3.09 9.04 -39.41 -0.36 -3.44 16 23 C 0.16 2.21 6.68 -39.24 -0.26 1.95 16 24 O -0.32 -3.92 10.49 -19.43 -0.20 -4.13 16 25 C 0.03 0.23 9.81 101.05 0.99 1.22 16 26 C -0.19 -2.94 9.93 -39.29 -0.39 -3.33 16 27 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.09 1.65 8.07 -51.93 -0.42 1.23 16 33 H 0.09 1.59 7.42 -51.93 -0.39 1.20 16 34 H 0.05 1.17 6.17 -51.93 -0.32 0.84 16 35 H 0.02 0.48 5.87 -51.93 -0.30 0.17 16 36 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 37 H 0.09 1.46 6.92 -51.93 -0.36 1.10 16 38 H 0.11 2.14 7.52 -51.93 -0.39 1.75 16 39 H 0.14 2.03 6.29 -52.49 -0.33 1.70 16 40 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 41 H 0.13 1.20 6.29 -52.49 -0.33 0.87 16 42 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 43 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 44 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.14 2.09 8.06 -52.48 -0.42 1.67 16 LS Contribution 376.58 15.07 5.67 5.67 Total: -1.00 -32.18 376.58 -6.52 -38.69 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -6.61 Total: 4.50 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -0.12 Total: 2.50 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: 0.35 Total: -36.81 kcal Atomic # 8 Polarization: -28.19 SS G_CDS: -1.15 Total: -29.34 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -4.67 Total: 14.79 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.18 -6.52 -38.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103215071.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.170 kcal (2) G-P(sol) polarization free energy of solvation -32.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds