Wall clock time and date at job start Tue Mar 31 2020 13:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46899 * 111.00285 * 2 1 4 4 C 1.46892 * 111.00272 * 123.95697 * 2 1 3 5 5 C 1.52999 * 109.47470 * 169.99716 * 4 2 1 6 6 N 1.46497 * 109.47299 * 179.97438 * 5 4 2 7 7 C 1.46504 * 120.00383 * 90.00004 * 6 5 4 8 8 C 1.50707 * 109.46935 * 270.00600 * 7 6 5 9 9 C 1.38227 * 119.62059 * 95.01845 * 8 7 6 10 10 C 1.38627 * 119.15702 * 179.74122 * 9 8 7 11 11 C 1.38669 * 118.42389 * 0.47826 * 10 9 8 12 12 C 1.38186 * 119.16143 * 359.49762 * 11 10 9 13 13 N 1.31856 * 119.61137 * 274.99275 * 8 7 6 14 14 C 1.34777 * 119.99928 * 270.00437 * 6 5 4 15 15 O 1.21287 * 120.00124 * 180.02562 * 14 6 5 16 16 C 1.50698 * 120.00377 * 359.97438 * 14 6 5 17 17 S 1.80995 * 109.47339 * 180.02562 * 16 14 6 18 18 C 1.76203 * 99.99878 * 180.02562 * 17 16 14 19 19 H 1.07996 * 120.00059 * 359.97438 * 18 17 16 20 20 C 1.38798 * 120.00116 * 179.97438 * 18 17 16 21 21 N 1.31633 * 119.99953 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00190 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46975 * 90.00456 * 22 20 18 24 24 H 1.48502 * 109.47223 * 210.00508 * 22 20 18 25 25 H 1.48500 * 109.47147 * 330.00195 * 22 20 18 26 26 H 1.08994 * 109.47101 * 296.04606 * 1 2 3 27 27 H 1.09005 * 109.47293 * 56.04356 * 1 2 3 28 28 H 1.08998 * 109.47345 * 176.04289 * 1 2 3 29 29 H 1.09000 * 109.47275 * 183.95762 * 3 2 1 30 30 H 1.09004 * 109.47011 * 303.95727 * 3 2 1 31 31 H 1.09001 * 109.46912 * 63.95191 * 3 2 1 32 32 H 1.09006 * 109.47132 * 49.99500 * 4 2 1 33 33 H 1.09000 * 109.46940 * 290.00249 * 4 2 1 34 34 H 1.08998 * 109.46792 * 59.99940 * 5 4 2 35 35 H 1.08997 * 109.47066 * 299.99894 * 5 4 2 36 36 H 1.08997 * 109.47679 * 150.00067 * 7 6 5 37 37 H 1.09003 * 109.46652 * 30.00027 * 7 6 5 38 38 H 1.07998 * 120.41916 * 359.95342 * 9 8 7 39 39 H 1.08008 * 120.78688 * 180.22921 * 10 9 8 40 40 H 1.08002 * 120.42244 * 179.78279 * 11 10 9 41 41 H 1.07996 * 119.61757 * 180.25243 * 12 11 10 42 42 H 1.08996 * 109.47123 * 300.00770 * 16 14 6 43 43 H 1.09001 * 109.46493 * 60.00386 * 16 14 6 44 44 H 0.96999 * 120.00674 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.5044 -0.9554 0.9702 6 7 4.0295 -1.7188 2.1049 7 6 4.0864 -3.1813 2.0405 8 6 2.7996 -3.7580 2.5722 9 6 1.7838 -4.0862 1.6941 10 6 0.6062 -4.6210 2.1931 11 6 0.4899 -4.7972 3.5636 12 6 1.5483 -4.4461 4.3798 13 7 2.6560 -3.9440 3.8696 14 6 4.4603 -1.0757 3.2083 15 8 4.8955 -1.7077 4.1475 16 6 4.4023 0.4287 3.2745 17 16 5.0474 0.9877 4.8705 18 6 4.8662 2.7301 4.6805 19 1 4.4556 3.1338 3.7668 20 6 5.2512 3.5837 5.7050 21 7 5.7521 3.0917 6.8184 22 14 5.0597 5.4309 5.5032 23 1 3.7217 5.8465 5.9952 24 1 6.1129 6.1261 6.2860 25 1 5.1926 5.7885 4.0680 26 1 -0.3633 0.4512 0.9232 27 1 -0.3634 0.5740 -0.8524 28 1 -0.3634 -1.0252 -0.0709 29 1 3.0828 1.3432 -0.0709 30 1 1.5898 1.9163 -0.8524 31 1 1.7044 1.8723 0.9233 32 1 1.5089 -1.7407 1.1755 33 1 1.7975 -0.2248 2.0627 34 1 3.9909 0.0193 0.9322 35 1 3.7023 -1.4966 0.0450 36 1 4.9213 -3.5394 2.6428 37 1 4.2245 -3.4942 1.0055 38 1 1.9073 -3.9311 0.6325 39 1 -0.2031 -4.8903 1.5304 40 1 -0.4145 -5.2080 3.9874 41 1 1.4673 -4.5841 5.4478 42 1 5.0054 0.8513 2.4710 43 1 3.3689 0.7576 3.1646 44 1 6.0209 3.6881 7.5345 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107261916.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:36 Heat of formation + Delta-G solvation = 15.862267 kcal Electronic energy + Delta-G solvation = -25416.385601 eV Core-core repulsion = 21881.598718 eV Total energy + Delta-G solvation = -3534.786883 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.49046 -39.24970 -37.60607 -35.31258 -32.69195 -32.41560 -32.15275 -29.62459 -29.27613 -27.71478 -26.28418 -25.41742 -24.28646 -23.53877 -22.22528 -21.31531 -19.20472 -17.68790 -17.07034 -16.75877 -16.41470 -15.99990 -15.75787 -15.32357 -15.31459 -14.79730 -14.65396 -14.43266 -14.10138 -13.70173 -13.50436 -13.38414 -13.25348 -12.81265 -12.57730 -12.53637 -12.35290 -12.02085 -11.87105 -11.82775 -11.70286 -11.59306 -11.06878 -11.01205 -10.98500 -10.75216 -9.96741 -9.79584 -9.47076 -9.39180 -9.05554 -9.00730 -8.64309 -8.48161 -8.18951 -6.47392 -6.20141 -3.90241 0.95844 1.20449 2.89923 3.13653 3.22201 3.25178 3.29899 3.55626 3.76666 4.00894 4.21469 4.25332 4.56871 4.74371 4.77665 4.83445 4.95013 4.97581 5.01546 5.06700 5.14728 5.25684 5.31261 5.37586 5.41525 5.43269 5.49254 5.59817 5.60460 5.65701 5.67513 5.77707 5.83726 5.88731 5.93935 6.01691 6.05024 6.15394 6.57517 6.60762 6.80145 6.84885 7.56212 7.60442 8.04067 8.36107 8.64813 9.24892 10.87230 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012216 B = 0.003933 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.504535 B = 7117.750141 C = 8436.675282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.543 5.543 3 C 0.015 3.985 4 C 0.030 3.970 5 C 0.115 3.885 6 N -0.615 5.615 7 C 0.165 3.835 8 C 0.114 3.886 9 C -0.165 4.165 10 C -0.081 4.081 11 C -0.177 4.177 12 C 0.101 3.899 13 N -0.452 5.452 14 C 0.532 3.468 15 O -0.491 6.491 16 C -0.148 4.148 17 S -0.058 6.058 18 C -0.535 4.535 19 H 0.071 0.929 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.917 3.083 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 H 0.026 0.974 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.031 0.969 32 H 0.079 0.921 33 H 0.039 0.961 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.133 0.867 39 H 0.131 0.869 40 H 0.132 0.868 41 H 0.155 0.845 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.906 -12.948 -16.010 23.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.267 5.267 3 C -0.133 4.133 4 C -0.099 4.099 5 C -0.009 4.009 6 N -0.351 5.351 7 C 0.042 3.958 8 C -0.026 4.026 9 C -0.185 4.185 10 C -0.107 4.107 11 C -0.197 4.197 12 C -0.057 4.057 13 N -0.160 5.160 14 C 0.319 3.681 15 O -0.363 6.363 16 C -0.298 4.298 17 S 0.169 5.831 18 C -0.683 4.683 19 H 0.089 0.911 20 C -0.135 4.135 21 N -0.502 5.502 22 Si 0.743 3.257 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 H 0.044 0.956 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.050 0.950 32 H 0.097 0.903 33 H 0.058 0.942 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.121 0.879 37 H 0.109 0.891 38 H 0.151 0.849 39 H 0.149 0.851 40 H 0.150 0.850 41 H 0.172 0.828 42 H 0.105 0.895 43 H 0.101 0.899 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.290 -13.841 -14.284 22.394 hybrid contribution -1.976 2.158 -1.014 3.096 sum -12.266 -11.684 -15.298 22.825 Atomic orbital electron populations 1.22360 0.87308 1.02024 1.00624 1.61992 1.07898 1.14206 1.42627 1.22509 1.01263 0.88576 1.00922 1.22718 0.96334 0.98870 0.91961 1.21552 0.92830 0.97609 0.88922 1.47917 1.64873 1.05125 1.17214 1.20242 0.94288 0.80214 1.01094 1.21783 0.96496 0.94945 0.89357 1.21973 0.94420 1.01051 1.01089 1.21527 0.97341 0.96307 0.95512 1.22169 1.00571 1.02342 0.94607 1.22882 0.88531 0.93598 1.00640 1.67676 1.24412 1.10029 1.13918 1.20324 0.76761 0.89638 0.81393 1.90739 1.42903 1.67876 1.34758 1.23563 1.04819 0.93766 1.07665 1.85431 1.81459 1.04589 1.11643 1.22848 1.49066 0.91353 1.05029 0.91103 1.24974 0.94556 0.99479 0.94484 1.70019 1.39508 1.35564 1.05124 0.86201 0.78047 0.83115 0.78342 1.20336 1.20710 1.19685 0.95557 0.91294 0.91568 0.90829 0.91324 0.95021 0.90281 0.94236 0.89767 0.89583 0.87928 0.89069 0.84899 0.85098 0.85032 0.82808 0.89457 0.89928 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.57 60.06 0.57 0.80 16 2 N -0.54 -5.68 5.02 -251.27 -1.26 -6.94 16 3 C 0.02 0.16 9.32 60.06 0.56 0.72 16 4 C 0.03 0.35 5.28 -3.83 -0.02 0.33 16 5 C 0.11 1.33 5.18 -4.04 -0.02 1.31 16 6 N -0.62 -8.93 2.46 -175.06 -0.43 -9.36 16 7 C 0.17 2.10 5.76 -5.19 -0.03 2.07 16 8 C 0.11 1.48 6.21 -82.58 -0.51 0.97 16 9 C -0.16 -1.63 7.76 -39.44 -0.31 -1.94 16 10 C -0.08 -0.72 10.18 -39.28 -0.40 -1.12 16 11 C -0.18 -1.71 10.11 -39.44 -0.40 -2.11 16 12 C 0.10 1.26 11.18 -17.55 -0.20 1.07 16 13 N -0.45 -7.02 10.27 -9.47 -0.10 -7.12 16 14 C 0.53 10.43 7.69 -10.99 -0.08 10.35 16 15 O -0.49 -11.55 15.44 5.55 0.09 -11.47 16 16 C -0.15 -3.09 4.71 36.00 0.17 -2.92 16 17 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 18 C -0.53 -15.35 9.50 30.94 0.29 -15.05 16 19 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 20 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 21 N -0.87 -26.36 13.22 55.49 0.73 -25.63 16 22 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 23 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 28 H 0.07 0.54 8.12 -51.93 -0.42 0.11 16 29 H 0.07 0.75 6.47 -51.93 -0.34 0.42 16 30 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 31 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.89 5.73 -51.93 -0.30 0.59 16 33 H 0.04 0.57 7.20 -51.93 -0.37 0.20 16 34 H 0.08 1.02 4.85 -51.93 -0.25 0.76 16 35 H 0.09 0.79 7.89 -51.93 -0.41 0.38 16 36 H 0.10 1.51 7.42 -51.93 -0.39 1.13 16 37 H 0.09 0.80 7.79 -51.93 -0.40 0.40 16 38 H 0.13 1.00 8.03 -52.49 -0.42 0.58 16 39 H 0.13 0.80 8.06 -52.48 -0.42 0.37 16 40 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 41 H 0.15 1.65 8.06 -52.49 -0.42 1.23 16 42 H 0.09 1.69 7.40 -51.92 -0.38 1.30 16 43 H 0.08 1.66 7.19 -51.92 -0.37 1.29 16 44 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 376.71 15.07 5.68 5.68 Total: -1.00 -35.84 376.71 -9.55 -45.39 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -6.56 Total: 0.22 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -0.47 Total: -3.48 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: -1.05 Total: -49.04 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.09 Total: -11.47 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.84 -9.55 -45.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107261916.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.257 kcal (2) G-P(sol) polarization free energy of solvation -35.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds