Wall clock time and date at job start Tue Mar 31 2020 13:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46899 * 111.00285 * 2 1 4 4 C 1.46892 * 111.00272 * 123.95697 * 2 1 3 5 5 C 1.52999 * 109.47470 * 169.99716 * 4 2 1 6 6 N 1.46497 * 109.47299 * 179.97438 * 5 4 2 7 7 C 1.46504 * 120.00383 * 90.00004 * 6 5 4 8 8 C 1.50707 * 109.46935 * 270.00600 * 7 6 5 9 9 C 1.38227 * 119.62059 * 95.01845 * 8 7 6 10 10 C 1.38627 * 119.15702 * 179.74122 * 9 8 7 11 11 C 1.38669 * 118.42389 * 0.47826 * 10 9 8 12 12 C 1.38186 * 119.16143 * 359.49762 * 11 10 9 13 13 N 1.31856 * 119.61137 * 274.99275 * 8 7 6 14 14 C 1.34777 * 119.99928 * 270.00437 * 6 5 4 15 15 O 1.21287 * 120.00124 * 180.02562 * 14 6 5 16 16 C 1.50698 * 120.00377 * 359.97438 * 14 6 5 17 17 S 1.80995 * 109.47339 * 180.02562 * 16 14 6 18 18 C 1.76203 * 99.99878 * 180.02562 * 17 16 14 19 19 H 1.07996 * 120.00059 * 359.97438 * 18 17 16 20 20 C 1.38798 * 120.00116 * 179.97438 * 18 17 16 21 21 N 1.31633 * 119.99953 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00190 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46975 * 90.00456 * 22 20 18 24 24 H 1.48502 * 109.47223 * 210.00508 * 22 20 18 25 25 H 1.48500 * 109.47147 * 330.00195 * 22 20 18 26 26 H 1.08994 * 109.47101 * 296.04606 * 1 2 3 27 27 H 1.09005 * 109.47293 * 56.04356 * 1 2 3 28 28 H 1.08998 * 109.47345 * 176.04289 * 1 2 3 29 29 H 1.09000 * 109.47275 * 183.95762 * 3 2 1 30 30 H 1.09004 * 109.47011 * 303.95727 * 3 2 1 31 31 H 1.09001 * 109.46912 * 63.95191 * 3 2 1 32 32 H 1.09006 * 109.47132 * 49.99500 * 4 2 1 33 33 H 1.09000 * 109.46940 * 290.00249 * 4 2 1 34 34 H 1.08998 * 109.46792 * 59.99940 * 5 4 2 35 35 H 1.08997 * 109.47066 * 299.99894 * 5 4 2 36 36 H 1.08997 * 109.47679 * 150.00067 * 7 6 5 37 37 H 1.09003 * 109.46652 * 30.00027 * 7 6 5 38 38 H 1.07998 * 120.41916 * 359.95342 * 9 8 7 39 39 H 1.08008 * 120.78688 * 180.22921 * 10 9 8 40 40 H 1.08002 * 120.42244 * 179.78279 * 11 10 9 41 41 H 1.07996 * 119.61757 * 180.25243 * 12 11 10 42 42 H 1.08996 * 109.47123 * 300.00770 * 16 14 6 43 43 H 1.09001 * 109.46493 * 60.00386 * 16 14 6 44 44 H 0.96999 * 120.00674 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.5044 -0.9554 0.9702 6 7 4.0295 -1.7188 2.1049 7 6 4.0864 -3.1813 2.0405 8 6 2.7996 -3.7580 2.5722 9 6 1.7838 -4.0862 1.6941 10 6 0.6062 -4.6210 2.1931 11 6 0.4899 -4.7972 3.5636 12 6 1.5483 -4.4461 4.3798 13 7 2.6560 -3.9440 3.8696 14 6 4.4603 -1.0757 3.2083 15 8 4.8955 -1.7077 4.1475 16 6 4.4023 0.4287 3.2745 17 16 5.0474 0.9877 4.8705 18 6 4.8662 2.7301 4.6805 19 1 4.4556 3.1338 3.7668 20 6 5.2512 3.5837 5.7050 21 7 5.7521 3.0917 6.8184 22 14 5.0597 5.4309 5.5032 23 1 3.7217 5.8465 5.9952 24 1 6.1129 6.1261 6.2860 25 1 5.1926 5.7885 4.0680 26 1 -0.3633 0.4512 0.9232 27 1 -0.3634 0.5740 -0.8524 28 1 -0.3634 -1.0252 -0.0709 29 1 3.0828 1.3432 -0.0709 30 1 1.5898 1.9163 -0.8524 31 1 1.7044 1.8723 0.9233 32 1 1.5089 -1.7407 1.1755 33 1 1.7975 -0.2248 2.0627 34 1 3.9909 0.0193 0.9322 35 1 3.7023 -1.4966 0.0450 36 1 4.9213 -3.5394 2.6428 37 1 4.2245 -3.4942 1.0055 38 1 1.9073 -3.9311 0.6325 39 1 -0.2031 -4.8903 1.5304 40 1 -0.4145 -5.2080 3.9874 41 1 1.4673 -4.5841 5.4478 42 1 5.0054 0.8513 2.4710 43 1 3.3689 0.7576 3.1646 44 1 6.0209 3.6881 7.5345 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107261916.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:35 Heat of formation + Delta-G solvation = -9.514659 kcal Electronic energy + Delta-G solvation = -25417.486027 eV Core-core repulsion = 21881.598718 eV Total energy + Delta-G solvation = -3535.887309 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.50507 -40.45822 -38.60537 -36.53936 -34.61073 -33.56762 -33.09168 -30.90362 -30.48027 -28.49881 -27.81063 -27.18310 -25.25260 -24.36564 -23.17128 -22.21045 -20.66255 -19.56574 -18.22695 -17.92158 -17.44615 -16.92092 -16.90000 -16.87499 -16.24063 -16.18751 -16.00845 -15.75174 -15.52937 -14.82411 -14.57961 -14.47957 -14.38839 -14.11113 -13.91210 -13.56187 -13.38614 -13.18636 -13.05524 -12.93117 -12.89652 -12.65679 -12.60272 -12.56663 -12.46853 -11.95414 -11.74011 -11.16768 -10.93330 -10.76152 -10.38381 -10.29780 -9.96405 -9.73261 -9.42105 -8.70071 -8.36679 -6.15550 0.12463 0.42463 1.23249 1.39756 1.43139 1.53669 1.59375 2.04822 2.24768 2.90955 2.97145 3.01810 3.28769 3.39992 3.67376 3.82446 3.87241 4.02540 4.04227 4.17405 4.20533 4.27472 4.28038 4.36883 4.43039 4.47587 4.52163 4.56314 4.60097 4.70651 4.78763 4.80559 4.87537 4.95237 5.00304 5.06020 5.21876 5.27970 5.38118 5.50277 5.82727 5.93390 5.99622 6.16847 6.24393 7.03929 7.16779 7.19183 8.72709 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012216 B = 0.003933 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.504535 B = 7117.750141 C = 8436.675282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.536 5.536 3 C 0.013 3.987 4 C 0.040 3.960 5 C 0.111 3.889 6 N -0.598 5.598 7 C 0.163 3.837 8 C 0.088 3.912 9 C -0.153 4.153 10 C -0.077 4.077 11 C -0.168 4.168 12 C 0.070 3.930 13 N -0.509 5.509 14 C 0.530 3.470 15 O -0.542 6.542 16 C -0.118 4.118 17 S -0.148 6.148 18 C -0.546 4.546 19 H 0.080 0.920 20 C 0.015 3.985 21 N -0.911 5.911 22 Si 0.998 3.002 23 H -0.269 1.269 24 H -0.276 1.276 25 H -0.256 1.256 26 H 0.011 0.989 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.010 0.990 32 H 0.089 0.911 33 H 0.003 0.997 34 H 0.079 0.921 35 H 0.126 0.874 36 H 0.072 0.928 37 H 0.140 0.860 38 H 0.167 0.833 39 H 0.171 0.829 40 H 0.161 0.839 41 H 0.153 0.847 42 H 0.106 0.894 43 H 0.089 0.911 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.125 -12.858 -19.917 27.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.260 5.260 3 C -0.135 4.135 4 C -0.089 4.089 5 C -0.011 4.011 6 N -0.332 5.332 7 C 0.040 3.960 8 C -0.051 4.051 9 C -0.173 4.173 10 C -0.103 4.103 11 C -0.188 4.188 12 C -0.087 4.087 13 N -0.218 5.218 14 C 0.317 3.683 15 O -0.417 6.417 16 C -0.269 4.269 17 S 0.079 5.921 18 C -0.693 4.693 19 H 0.098 0.902 20 C -0.190 4.190 21 N -0.547 5.547 22 Si 0.819 3.181 23 H -0.194 1.194 24 H -0.201 1.201 25 H -0.180 1.180 26 H 0.030 0.970 27 H 0.103 0.897 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.029 0.971 32 H 0.107 0.893 33 H 0.021 0.979 34 H 0.097 0.903 35 H 0.144 0.856 36 H 0.090 0.910 37 H 0.158 0.842 38 H 0.184 0.816 39 H 0.188 0.812 40 H 0.178 0.822 41 H 0.170 0.830 42 H 0.124 0.876 43 H 0.107 0.893 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.540 -13.772 -18.249 26.075 hybrid contribution -1.382 2.002 0.107 2.434 sum -13.921 -11.771 -18.141 25.719 Atomic orbital electron populations 1.22464 0.86275 1.03214 1.00593 1.62058 1.08789 1.13883 1.41236 1.22564 1.01576 0.88715 1.00643 1.22582 0.96391 0.99038 0.90906 1.21817 0.92651 0.97684 0.88979 1.47809 1.62991 1.06322 1.16090 1.20497 0.93738 0.78418 1.03315 1.21839 0.97452 0.96583 0.89211 1.22263 0.93529 0.99440 1.02107 1.22022 0.97915 0.94821 0.95532 1.22481 1.00377 1.00818 0.95086 1.23071 0.89227 0.94971 1.01383 1.67545 1.26413 1.11925 1.15955 1.20103 0.76954 0.88903 0.82319 1.90723 1.45610 1.68437 1.36957 1.23338 1.04762 0.95271 1.03544 1.85615 1.82674 1.06048 1.17754 1.23156 1.49281 0.91260 1.05643 0.90198 1.26124 0.93724 1.05308 0.93823 1.70188 1.40609 1.37718 1.06216 0.84973 0.78304 0.75714 0.79126 1.19389 1.20073 1.17997 0.97003 0.89695 0.90048 0.90638 0.89494 0.97134 0.89271 0.97882 0.90264 0.85647 0.90977 0.84185 0.81601 0.81197 0.82151 0.82955 0.87615 0.89254 0.91952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.57 127.69 1.22 1.57 16 2 N -0.54 -9.64 5.02 -948.87 -4.76 -14.40 16 3 C 0.01 0.25 9.32 127.69 1.19 1.44 16 4 C 0.04 0.85 5.28 86.30 0.46 1.31 16 5 C 0.11 2.29 5.18 86.38 0.45 2.74 16 6 N -0.60 -16.93 2.46 -826.14 -2.03 -18.96 16 7 C 0.16 3.98 5.76 85.63 0.49 4.47 16 8 C 0.09 2.22 6.21 42.55 0.26 2.48 16 9 C -0.15 -2.50 7.76 22.36 0.17 -2.33 16 10 C -0.08 -1.08 10.18 22.47 0.23 -0.85 16 11 C -0.17 -2.90 10.11 22.36 0.23 -2.67 16 12 C 0.07 1.80 11.18 84.67 0.95 2.75 16 13 N -0.51 -16.40 10.27 -183.88 -1.89 -18.29 16 14 C 0.53 21.51 7.69 87.66 0.67 22.18 16 15 O -0.54 -27.11 15.44 -3.05 -0.05 -27.15 16 16 C -0.12 -5.08 4.71 71.24 0.34 -4.74 16 17 S -0.15 -8.60 20.57 -56.49 -1.16 -9.76 16 18 C -0.55 -32.00 9.50 67.95 0.65 -31.36 16 19 H 0.08 4.37 7.80 -2.91 -0.02 4.34 16 20 C 0.02 0.87 5.49 84.86 0.47 1.34 16 21 N -0.91 -57.09 13.22 21.65 0.29 -56.81 16 22 Si 1.00 44.27 29.55 68.60 2.03 46.29 16 23 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 24 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 25 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 26 H 0.01 0.21 8.14 -2.39 -0.02 0.19 16 27 H 0.08 1.04 8.12 -2.38 -0.02 1.02 16 28 H 0.08 1.00 8.12 -2.39 -0.02 0.98 16 29 H 0.07 1.38 6.47 -2.39 -0.02 1.37 16 30 H 0.09 1.32 8.12 -2.39 -0.02 1.30 16 31 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 32 H 0.09 1.71 5.73 -2.38 -0.01 1.70 16 33 H 0.00 0.08 7.20 -2.39 -0.02 0.07 16 34 H 0.08 1.75 4.85 -2.39 -0.01 1.74 16 35 H 0.13 1.70 7.89 -2.39 -0.02 1.68 16 36 H 0.07 2.22 7.42 -2.39 -0.02 2.20 16 37 H 0.14 1.95 7.79 -2.39 -0.02 1.93 16 38 H 0.17 1.55 8.03 -2.91 -0.02 1.52 16 39 H 0.17 1.07 8.06 -2.91 -0.02 1.05 16 40 H 0.16 1.74 8.06 -2.91 -0.02 1.71 16 41 H 0.15 3.58 8.06 -2.91 -0.02 3.55 16 42 H 0.11 4.11 7.40 -2.40 -0.02 4.09 16 43 H 0.09 3.70 7.19 -2.39 -0.02 3.68 16 44 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -84.43 376.71 1.18 -83.25 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 0.99 Total: 17.50 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: 7.77 Total: -1.67 kcal Atomic # 7 Polarization: -100.06 SS G_CDS: -8.39 Total: -108.46 kcal Atomic # 8 Polarization: -27.11 SS G_CDS: -0.05 Total: -27.15 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.76 kcal Total: -84.43 1.18 -83.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107261916.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.732 kcal (2) G-P(sol) polarization free energy of solvation -84.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds