Wall clock time and date at job start Tue Mar 31 2020 14:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 114.00540 * 2 1 4 4 C 1.52994 * 109.47638 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.47544 * 64.99302 * 4 3 2 6 6 C 1.42901 * 114.00381 * 180.02562 * 5 4 3 7 7 C 1.52996 * 109.47184 * 180.02562 * 6 5 4 8 8 C 1.50704 * 109.47144 * 180.02562 * 7 6 5 9 9 O 1.21282 * 119.99561 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00135 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99933 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47005 * 179.97438 * 11 10 8 13 13 C 1.38328 * 119.96230 * 269.97666 * 12 11 10 14 14 C 1.38280 * 120.13484 * 180.02562 * 13 12 11 15 15 C 1.38120 * 120.07150 * 359.67534 * 14 13 12 16 16 C 1.38861 * 119.92830 * 0.59673 * 15 14 13 17 17 O 1.35751 * 120.06597 * 179.69892 * 16 15 14 18 18 C 1.34829 * 117.00376 * 354.17384 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38657 * 120.00083 * 185.03464 * 18 17 16 21 21 N 1.31555 * 119.99797 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99748 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47410 * 90.00109 * 22 20 18 24 24 H 1.48504 * 109.46801 * 209.99865 * 22 20 18 25 25 H 1.48497 * 109.47495 * 329.99577 * 22 20 18 26 26 C 1.38073 * 119.96947 * 89.99513 * 12 11 10 27 27 H 1.08995 * 109.47333 * 59.99494 * 1 2 3 28 28 H 1.09002 * 109.47181 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46691 * 299.99679 * 1 2 3 30 30 H 1.09005 * 109.47075 * 60.00142 * 3 2 1 31 31 H 1.09000 * 109.46981 * 300.00359 * 3 2 1 32 32 H 1.09011 * 109.46868 * 304.99869 * 4 3 2 33 33 H 1.09000 * 109.47602 * 185.00018 * 4 3 2 34 34 H 1.09007 * 109.46807 * 60.00418 * 6 5 4 35 35 H 1.09003 * 109.47331 * 300.00630 * 6 5 4 36 36 H 1.09007 * 109.47155 * 60.00328 * 7 6 5 37 37 H 1.09003 * 109.47254 * 300.00375 * 7 6 5 38 38 H 0.97001 * 119.99467 * 359.97438 * 10 8 7 39 39 H 1.08993 * 109.47130 * 59.99768 * 11 10 8 40 40 H 1.09003 * 109.47080 * 299.99631 * 11 10 8 41 41 H 1.08001 * 119.93314 * 0.02562 * 13 12 11 42 42 H 1.08007 * 119.96121 * 179.97438 * 14 13 12 43 43 H 1.08001 * 120.03709 * 180.32387 * 15 14 13 44 44 H 0.96998 * 119.99749 * 179.97438 * 21 20 18 45 45 H 1.08001 * 120.03594 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9650 0.5794 -1.2219 6 6 5.3812 0.4189 -1.3245 7 6 5.7247 -0.2343 -2.6647 8 6 7.2182 -0.4042 -2.7726 9 8 7.9370 -0.0392 -1.8665 10 7 7.7550 -0.9617 -3.8760 11 6 9.2069 -1.1274 -3.9806 12 6 9.5452 -1.7706 -5.3007 13 6 9.6136 -3.1486 -5.4003 14 6 9.9243 -3.7427 -6.6098 15 6 10.1607 -2.9615 -7.7240 16 6 10.0983 -1.5777 -7.6259 17 8 10.3362 -0.8071 -8.7179 18 6 10.7453 -1.4395 -9.8362 19 1 10.7918 -2.5182 -9.8602 20 6 11.1063 -0.7049 -10.9554 21 7 11.5059 -1.3220 -12.0463 22 14 11.0264 1.1609 -10.9136 23 1 12.3278 1.7017 -10.4456 24 1 10.7383 1.6746 -12.2769 25 1 9.9495 1.5897 -9.9854 26 6 9.7869 -0.9841 -6.4094 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.6888 1.8463 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 3.8515 0.5681 0.8410 33 1 3.9786 2.1764 0.0889 34 1 5.7351 -0.2137 -0.5103 35 1 5.8630 1.3947 -1.2622 36 1 5.3709 0.3986 -3.4786 37 1 5.2429 -1.2101 -2.7274 38 1 7.1800 -1.2540 -4.6004 39 1 9.5598 -1.7610 -3.1670 40 1 9.6894 -0.1520 -3.9171 41 1 9.4240 -3.7618 -4.5317 42 1 9.9774 -4.8188 -6.6843 43 1 10.3981 -3.4262 -8.6696 44 1 11.7581 -0.8082 -12.8294 45 1 9.7340 0.0918 -6.3309 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113108025.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:03 Heat of formation + Delta-G solvation = -135.500489 kcal Electronic energy + Delta-G solvation = -25498.103675 eV Core-core repulsion = 21481.707588 eV Total energy + Delta-G solvation = -4016.396087 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.97049 -39.23842 -38.71537 -37.51459 -36.98802 -34.62368 -32.50012 -32.43037 -30.94252 -29.96081 -29.37583 -26.69111 -26.15484 -25.18425 -23.49141 -22.93224 -21.86008 -20.74925 -20.38155 -17.97890 -17.70679 -17.30041 -17.20140 -16.51093 -16.23528 -16.07922 -15.54145 -15.47311 -15.39418 -15.19618 -14.77768 -14.15707 -13.97537 -13.86769 -13.64997 -13.49413 -13.30686 -12.80475 -12.62164 -12.58723 -12.22775 -12.10822 -12.03382 -11.75298 -11.51900 -11.47052 -11.34271 -10.96968 -10.90828 -10.78788 -10.23276 -10.11565 -10.01708 -9.90084 -9.48634 -9.09872 -8.94759 -8.36229 -7.50815 -6.48169 -4.15617 1.77298 2.12417 2.54858 2.93966 3.17763 3.21889 3.35252 3.35574 3.66051 4.17985 4.38651 4.54432 4.61924 4.64194 4.73224 4.79807 4.83511 4.92373 4.95233 5.01333 5.06520 5.08739 5.16012 5.27196 5.29915 5.31763 5.39603 5.55428 5.58246 5.62412 5.72374 5.81321 5.98607 6.12312 6.36761 6.39284 6.64788 6.70168 6.88627 6.96928 7.08265 7.17987 7.42411 7.49890 7.70932 7.95415 8.12759 8.86641 9.47370 10.59194 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.016364 B = 0.001851 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.636775 B =15122.673321 C =15774.176073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.062 3.938 4 C 0.065 3.935 5 O -0.384 6.384 6 C 0.079 3.921 7 C -0.140 4.140 8 C 0.517 3.483 9 O -0.549 6.549 10 N -0.719 5.719 11 C 0.167 3.833 12 C -0.076 4.076 13 C -0.186 4.186 14 C -0.077 4.077 15 C -0.212 4.212 16 C 0.156 3.844 17 O -0.215 6.215 18 C -0.392 4.392 19 H 0.107 0.893 20 C 0.065 3.935 21 N -0.877 5.877 22 Si 0.906 3.094 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.260 1.260 26 C -0.171 4.171 27 H 0.042 0.958 28 H 0.086 0.914 29 H 0.039 0.961 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.405 0.595 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.109 0.891 42 H 0.113 0.887 43 H 0.134 0.866 44 H 0.280 0.720 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.000 3.012 21.557 27.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C -0.014 4.014 4 C -0.011 4.011 5 O -0.303 6.303 6 C 0.002 3.998 7 C -0.180 4.180 8 C 0.303 3.697 9 O -0.427 6.427 10 N -0.371 5.371 11 C 0.045 3.955 12 C -0.077 4.077 13 C -0.206 4.206 14 C -0.095 4.095 15 C -0.231 4.231 16 C 0.104 3.896 17 O -0.120 6.120 18 C -0.467 4.467 19 H 0.124 0.876 20 C -0.139 4.139 21 N -0.514 5.514 22 Si 0.731 3.269 23 H -0.198 1.198 24 H -0.207 1.207 25 H -0.184 1.184 26 C -0.191 4.191 27 H 0.060 0.940 28 H 0.105 0.895 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.240 0.760 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.127 0.873 42 H 0.131 0.869 43 H 0.152 0.848 44 H 0.090 0.910 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -16.417 3.324 21.776 27.473 hybrid contribution -0.195 0.738 -0.507 0.917 sum -16.612 4.062 21.268 27.291 Atomic orbital electron populations 1.22754 0.81035 1.02929 0.99872 1.87968 1.19617 1.27317 1.95372 1.22579 0.92410 0.85528 1.00916 1.22494 0.93196 0.97710 0.87747 1.87869 1.22180 1.82221 1.38052 1.22111 0.80836 1.00243 0.96647 1.21464 0.92778 1.04262 0.99496 1.20388 0.90134 0.77165 0.82017 1.90706 1.63032 1.50054 1.38914 1.46124 1.08528 1.62398 1.20030 1.20159 0.79985 1.00631 0.94737 1.19263 1.01575 0.93516 0.93331 1.20557 1.08734 0.93522 0.97750 1.20811 0.97457 0.98859 0.92413 1.21372 1.08185 0.93486 1.00086 1.19060 0.93487 0.89950 0.87116 1.83574 1.74890 1.35699 1.17881 1.20761 1.44520 0.93967 0.87457 0.87585 1.24469 0.95187 1.00367 0.93895 1.69641 1.42118 1.36914 1.02761 0.86181 0.79671 0.83383 0.77670 1.19834 1.20724 1.18370 1.20077 1.09170 0.99393 0.90455 0.93955 0.89526 0.94218 0.91800 0.92309 0.92301 0.91616 0.92355 0.92439 0.87911 0.87868 0.75995 0.90800 0.90802 0.87262 0.86939 0.84812 0.90959 0.86388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.30 16 2 O -0.38 -3.61 10.67 -40.08 -0.43 -4.03 16 3 C 0.06 0.44 6.32 37.15 0.23 0.68 16 4 C 0.07 0.51 6.32 37.15 0.23 0.75 16 5 O -0.38 -4.03 10.31 -40.08 -0.41 -4.44 16 6 C 0.08 0.79 5.23 37.16 0.19 0.98 16 7 C -0.14 -1.32 6.07 -27.88 -0.17 -1.49 16 8 C 0.52 6.31 7.83 -10.98 -0.09 6.23 16 9 O -0.55 -8.58 15.98 5.56 0.09 -8.49 16 10 N -0.72 -8.49 5.55 -61.47 -0.34 -8.83 16 11 C 0.17 2.25 5.80 -5.20 -0.03 2.22 16 12 C -0.08 -1.19 5.25 -104.65 -0.55 -1.74 16 13 C -0.19 -2.86 9.70 -39.53 -0.38 -3.24 16 14 C -0.08 -1.30 10.04 -39.61 -0.40 -1.69 16 15 C -0.21 -4.31 9.17 -39.39 -0.36 -4.68 16 16 C 0.16 3.42 6.65 -39.11 -0.26 3.16 16 17 O -0.22 -5.49 8.59 0.05 0.00 -5.49 16 18 C -0.39 -10.73 9.95 30.89 0.31 -10.42 16 19 H 0.11 2.96 5.44 -52.49 -0.29 2.67 16 20 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 21 N -0.88 -24.82 13.96 55.48 0.77 -24.04 16 22 Si 0.91 21.25 28.62 -169.99 -4.86 16.39 16 23 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.26 -6.10 7.11 56.52 0.40 -5.70 16 26 C -0.17 -3.17 9.65 -39.40 -0.38 -3.55 16 27 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 35 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 36 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.41 4.17 8.46 -40.82 -0.35 3.82 16 39 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 40 H 0.07 1.03 8.09 -51.93 -0.42 0.61 16 41 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 42 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 43 H 0.13 2.88 5.64 -52.49 -0.30 2.58 16 44 H 0.28 7.33 8.31 -40.82 -0.34 6.99 16 45 H 0.12 2.09 8.06 -52.49 -0.42 1.66 16 LS Contribution 387.12 15.07 5.83 5.83 Total: -1.00 -32.00 387.12 -6.79 -38.79 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -6.82 Total: 4.13 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: -0.63 Total: -9.81 kcal Atomic # 7 Polarization: -33.30 SS G_CDS: 0.43 Total: -32.87 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.75 Total: -22.45 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.86 Total: 16.39 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.00 -6.79 -38.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113108025.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.710 kcal (2) G-P(sol) polarization free energy of solvation -31.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds