Wall clock time and date at job start Tue Mar 31 2020 14:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 114.00540 * 2 1 4 4 C 1.52994 * 109.47638 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.47544 * 64.99302 * 4 3 2 6 6 C 1.42901 * 114.00381 * 180.02562 * 5 4 3 7 7 C 1.52996 * 109.47184 * 180.02562 * 6 5 4 8 8 C 1.50704 * 109.47144 * 180.02562 * 7 6 5 9 9 O 1.21282 * 119.99561 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00135 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99933 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47005 * 179.97438 * 11 10 8 13 13 C 1.38328 * 119.96230 * 269.97666 * 12 11 10 14 14 C 1.38280 * 120.13484 * 180.02562 * 13 12 11 15 15 C 1.38120 * 120.07150 * 359.67534 * 14 13 12 16 16 C 1.38861 * 119.92830 * 0.59673 * 15 14 13 17 17 O 1.35751 * 120.06597 * 179.69892 * 16 15 14 18 18 C 1.34829 * 117.00376 * 354.17384 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38657 * 120.00083 * 185.03464 * 18 17 16 21 21 N 1.31555 * 119.99797 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99748 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47410 * 90.00109 * 22 20 18 24 24 H 1.48504 * 109.46801 * 209.99865 * 22 20 18 25 25 H 1.48497 * 109.47495 * 329.99577 * 22 20 18 26 26 C 1.38073 * 119.96947 * 89.99513 * 12 11 10 27 27 H 1.08995 * 109.47333 * 59.99494 * 1 2 3 28 28 H 1.09002 * 109.47181 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46691 * 299.99679 * 1 2 3 30 30 H 1.09005 * 109.47075 * 60.00142 * 3 2 1 31 31 H 1.09000 * 109.46981 * 300.00359 * 3 2 1 32 32 H 1.09011 * 109.46868 * 304.99869 * 4 3 2 33 33 H 1.09000 * 109.47602 * 185.00018 * 4 3 2 34 34 H 1.09007 * 109.46807 * 60.00418 * 6 5 4 35 35 H 1.09003 * 109.47331 * 300.00630 * 6 5 4 36 36 H 1.09007 * 109.47155 * 60.00328 * 7 6 5 37 37 H 1.09003 * 109.47254 * 300.00375 * 7 6 5 38 38 H 0.97001 * 119.99467 * 359.97438 * 10 8 7 39 39 H 1.08993 * 109.47130 * 59.99768 * 11 10 8 40 40 H 1.09003 * 109.47080 * 299.99631 * 11 10 8 41 41 H 1.08001 * 119.93314 * 0.02562 * 13 12 11 42 42 H 1.08007 * 119.96121 * 179.97438 * 14 13 12 43 43 H 1.08001 * 120.03709 * 180.32387 * 15 14 13 44 44 H 0.96998 * 119.99749 * 179.97438 * 21 20 18 45 45 H 1.08001 * 120.03594 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9650 0.5794 -1.2219 6 6 5.3812 0.4189 -1.3245 7 6 5.7247 -0.2343 -2.6647 8 6 7.2182 -0.4042 -2.7726 9 8 7.9370 -0.0392 -1.8665 10 7 7.7550 -0.9617 -3.8760 11 6 9.2069 -1.1274 -3.9806 12 6 9.5452 -1.7706 -5.3007 13 6 9.6136 -3.1486 -5.4003 14 6 9.9243 -3.7427 -6.6098 15 6 10.1607 -2.9615 -7.7240 16 6 10.0983 -1.5777 -7.6259 17 8 10.3362 -0.8071 -8.7179 18 6 10.7453 -1.4395 -9.8362 19 1 10.7918 -2.5182 -9.8602 20 6 11.1063 -0.7049 -10.9554 21 7 11.5059 -1.3220 -12.0463 22 14 11.0264 1.1609 -10.9136 23 1 12.3278 1.7017 -10.4456 24 1 10.7383 1.6746 -12.2769 25 1 9.9495 1.5897 -9.9854 26 6 9.7869 -0.9841 -6.4094 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.6888 1.8463 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 3.8515 0.5681 0.8410 33 1 3.9786 2.1764 0.0889 34 1 5.7351 -0.2137 -0.5103 35 1 5.8630 1.3947 -1.2622 36 1 5.3709 0.3986 -3.4786 37 1 5.2429 -1.2101 -2.7274 38 1 7.1800 -1.2540 -4.6004 39 1 9.5598 -1.7610 -3.1670 40 1 9.6894 -0.1520 -3.9171 41 1 9.4240 -3.7618 -4.5317 42 1 9.9774 -4.8188 -6.6843 43 1 10.3981 -3.4262 -8.6696 44 1 11.7581 -0.8082 -12.8294 45 1 9.7340 0.0918 -6.3309 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113108025.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:02 Heat of formation + Delta-G solvation = -157.803310 kcal Electronic energy + Delta-G solvation = -25499.070798 eV Core-core repulsion = 21481.707588 eV Total energy + Delta-G solvation = -4017.363210 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.15232 -40.65059 -39.38197 -38.60571 -38.11094 -35.79391 -34.45749 -33.28934 -32.13947 -31.03925 -30.54199 -27.58196 -27.15625 -26.87970 -24.40456 -23.50415 -23.31422 -22.26790 -21.36545 -19.71148 -19.08411 -18.41868 -17.83004 -17.32661 -17.10481 -17.04994 -16.82197 -16.62489 -16.22908 -16.13341 -15.96391 -15.71737 -15.62787 -14.99943 -14.63383 -14.57429 -14.42442 -14.24546 -14.01991 -13.84300 -13.38769 -13.13949 -13.11235 -12.67248 -12.56600 -12.47352 -12.42846 -12.37212 -12.14679 -11.95457 -11.94643 -11.33280 -11.08423 -10.91294 -10.65445 -10.59315 -10.12606 -9.79303 -9.12939 -8.50509 -6.23356 0.34267 0.64197 1.31523 1.34858 1.51145 1.59438 2.04896 2.27088 2.71626 2.86754 2.91404 2.98623 3.17773 3.72126 3.79478 4.02550 4.05364 4.07091 4.18476 4.25529 4.27369 4.40948 4.45908 4.49009 4.49320 4.54250 4.58803 4.61543 4.66411 4.72249 4.75609 4.85134 4.87940 4.88710 4.92643 5.18498 5.34863 5.38397 5.62318 5.68461 5.74493 5.88654 6.13578 6.18745 6.28111 6.51269 6.83937 7.18275 7.57642 8.60843 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.016364 B = 0.001851 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.636775 B =15122.673321 C =15774.176073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.416 6.416 3 C 0.060 3.940 4 C 0.057 3.943 5 O -0.400 6.400 6 C 0.081 3.919 7 C -0.132 4.132 8 C 0.520 3.480 9 O -0.584 6.584 10 N -0.713 5.713 11 C 0.173 3.827 12 C -0.062 4.062 13 C -0.159 4.159 14 C -0.074 4.074 15 C -0.228 4.228 16 C 0.119 3.881 17 O -0.245 6.245 18 C -0.399 4.399 19 H 0.083 0.917 20 C 0.011 3.989 21 N -0.922 5.922 22 Si 0.968 3.032 23 H -0.268 1.268 24 H -0.268 1.268 25 H -0.262 1.262 26 C -0.169 4.169 27 H 0.047 0.953 28 H 0.091 0.909 29 H 0.055 0.945 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.084 0.916 34 H 0.051 0.949 35 H 0.054 0.946 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.415 0.585 39 H 0.086 0.914 40 H 0.069 0.931 41 H 0.149 0.851 42 H 0.144 0.856 43 H 0.110 0.890 44 H 0.284 0.716 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.557 3.293 24.320 30.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.336 6.336 3 C -0.016 4.016 4 C -0.019 4.019 5 O -0.320 6.320 6 C 0.004 3.996 7 C -0.172 4.172 8 C 0.308 3.692 9 O -0.464 6.464 10 N -0.365 5.365 11 C 0.050 3.950 12 C -0.062 4.062 13 C -0.178 4.178 14 C -0.092 4.092 15 C -0.248 4.248 16 C 0.070 3.930 17 O -0.153 6.153 18 C -0.475 4.475 19 H 0.101 0.899 20 C -0.187 4.187 21 N -0.562 5.562 22 Si 0.791 3.209 23 H -0.193 1.193 24 H -0.193 1.193 25 H -0.187 1.187 26 C -0.189 4.189 27 H 0.065 0.935 28 H 0.109 0.891 29 H 0.073 0.927 30 H 0.106 0.894 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.251 0.749 39 H 0.104 0.896 40 H 0.088 0.912 41 H 0.167 0.833 42 H 0.162 0.838 43 H 0.128 0.872 44 H 0.094 0.906 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -18.006 3.581 24.568 30.670 hybrid contribution 0.183 0.474 -1.021 1.140 sum -17.824 4.054 23.547 29.809 Atomic orbital electron populations 1.22903 0.79615 1.03652 1.00872 1.87914 1.21360 1.28694 1.95616 1.22713 0.91750 0.85035 1.02147 1.22730 0.93985 0.98463 0.86769 1.87842 1.22124 1.82648 1.39341 1.22053 0.80871 0.99973 0.96742 1.21431 0.90641 1.05418 0.99694 1.20777 0.91036 0.76132 0.81265 1.90699 1.64055 1.51532 1.40159 1.46015 1.07898 1.62253 1.20356 1.20055 0.81059 1.00505 0.93379 1.19478 0.99785 0.93677 0.93274 1.21046 1.04878 0.93656 0.98187 1.21147 0.96204 1.00266 0.91586 1.21405 1.09264 0.93456 1.00646 1.19586 0.95242 0.90764 0.87449 1.83517 1.77397 1.36128 1.18222 1.20701 1.44799 0.93264 0.88736 0.89931 1.25249 0.95174 1.04778 0.93543 1.69723 1.44388 1.38527 1.03580 0.85247 0.79541 0.78069 0.78052 1.19280 1.19275 1.18666 1.20280 1.08502 1.00148 0.89961 0.93464 0.89060 0.92673 0.89361 0.92189 0.92464 0.89814 0.93110 0.92800 0.86439 0.86281 0.74887 0.89562 0.91236 0.83287 0.83849 0.87236 0.90590 0.85849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.42 -7.28 10.67 -144.34 -1.54 -8.82 16 3 C 0.06 0.75 6.32 71.98 0.45 1.21 16 4 C 0.06 0.81 6.32 71.98 0.45 1.27 16 5 O -0.40 -7.76 10.31 -144.34 -1.49 -9.25 16 6 C 0.08 1.49 5.23 71.98 0.38 1.86 16 7 C -0.13 -2.15 6.07 29.85 0.18 -1.97 16 8 C 0.52 11.34 7.83 87.66 0.69 12.03 16 9 O -0.58 -17.09 15.98 -3.04 -0.05 -17.14 16 10 N -0.71 -14.49 5.55 -466.79 -2.59 -17.08 16 11 C 0.17 4.06 5.80 85.63 0.50 4.56 16 12 C -0.06 -1.72 5.25 -19.88 -0.10 -1.83 16 13 C -0.16 -4.19 9.70 22.30 0.22 -3.97 16 14 C -0.07 -2.30 10.04 22.25 0.22 -2.07 16 15 C -0.23 -9.40 9.17 22.39 0.21 -9.20 16 16 C 0.12 5.27 6.65 22.58 0.15 5.42 16 17 O -0.24 -12.93 8.59 -22.74 -0.20 -13.13 16 18 C -0.40 -22.98 9.95 67.92 0.68 -22.30 16 19 H 0.08 4.97 5.44 -2.91 -0.02 4.95 16 20 C 0.01 0.64 5.49 84.83 0.47 1.10 16 21 N -0.92 -54.32 13.96 21.61 0.30 -54.01 16 22 Si 0.97 44.87 28.62 68.60 1.96 46.83 16 23 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 24 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 25 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 26 C -0.17 -6.05 9.65 22.39 0.22 -5.84 16 27 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.05 1.00 8.10 -2.38 -0.02 0.98 16 35 H 0.05 1.01 8.10 -2.39 -0.02 1.00 16 36 H 0.12 1.61 8.14 -2.38 -0.02 1.59 16 37 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.41 7.05 8.46 -92.71 -0.78 6.26 16 39 H 0.09 1.90 8.08 -2.39 -0.02 1.88 16 40 H 0.07 1.75 8.09 -2.39 -0.02 1.73 16 41 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 42 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 43 H 0.11 5.02 5.64 -2.91 -0.02 5.00 16 44 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 45 H 0.12 4.24 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -72.22 387.12 2.56 -69.66 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: 0.21 Total: 21.16 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: 5.95 Total: -18.23 kcal Atomic # 7 Polarization: -68.80 SS G_CDS: -2.29 Total: -71.09 kcal Atomic # 8 Polarization: -45.07 SS G_CDS: -3.27 Total: -48.34 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.96 Total: 46.83 kcal Total: -72.22 2.56 -69.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113108025.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.140 kcal (2) G-P(sol) polarization free energy of solvation -72.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds