Wall clock time and date at job start Tue Mar 31 2020 14:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 C 1.34970 * 125.97934 * 124.71857 * 10 9 7 12 12 C 1.35234 * 107.86531 * 179.87401 * 11 10 9 13 13 C 1.40411 * 107.86728 * 0.38220 * 12 11 10 14 14 N 1.40159 * 125.97546 * 179.76622 * 13 12 11 15 15 C 1.34778 * 119.99905 * 0.02562 * 14 13 12 16 16 O 1.21291 * 120.00022 * 0.02562 * 15 14 13 17 17 C 1.50695 * 119.99996 * 180.02562 * 15 14 13 18 18 C 1.52999 * 109.47300 * 180.02562 * 17 15 14 19 19 O 1.42896 * 109.47176 * 179.97438 * 18 17 15 20 20 C 1.42909 * 113.99979 * 180.02562 * 19 18 17 21 21 C 1.52992 * 109.47284 * 180.02562 * 20 19 18 22 22 H 1.09000 * 109.82535 * 305.56705 * 21 20 19 23 23 C 1.54384 * 109.83236 * 184.58600 * 21 20 19 24 24 C 1.55302 * 102.25334 * 219.12825 * 23 21 20 25 25 C 1.54946 * 100.94193 * 34.13405 * 24 23 21 26 26 O 1.43240 * 109.83509 * 66.45277 * 21 20 19 27 27 N 1.31223 * 108.05096 * 359.76291 * 13 12 11 28 28 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 30 30 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 31 31 H 1.08004 * 126.06260 * 0.02562 * 11 10 9 32 32 H 1.07999 * 126.06674 * 180.17090 * 12 11 10 33 33 H 0.96998 * 120.00228 * 180.02562 * 14 13 12 34 34 H 1.08995 * 109.47485 * 300.00750 * 17 15 14 35 35 H 1.09001 * 109.47258 * 60.00803 * 17 15 14 36 36 H 1.08995 * 109.47212 * 300.00609 * 18 17 15 37 37 H 1.09008 * 109.46900 * 60.00274 * 18 17 15 38 38 H 1.09006 * 109.46908 * 300.00439 * 20 19 18 39 39 H 1.08996 * 109.46952 * 59.99488 * 20 19 18 40 40 H 1.08998 * 110.84590 * 337.31662 * 23 21 20 41 41 H 1.08997 * 110.84520 * 100.93844 * 23 21 20 42 42 H 1.09000 * 111.12455 * 276.21242 * 24 23 21 43 43 H 1.09001 * 111.16506 * 152.06510 * 24 23 21 44 44 H 1.09007 * 110.30620 * 204.64185 * 25 24 23 45 45 H 1.08992 * 110.39845 * 82.51455 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 6 2.2452 -4.6236 0.8830 12 6 3.2607 -5.4449 0.5323 13 6 3.8692 -4.9118 -0.6154 14 7 4.9653 -5.4593 -1.2959 15 6 5.5296 -6.6015 -0.8560 16 8 5.0885 -7.1558 0.1286 17 6 6.7085 -7.1899 -1.5873 18 6 7.1529 -8.4757 -0.8873 19 8 8.2704 -9.0340 -1.5812 20 6 8.7659 -10.2448 -1.0061 21 6 9.9552 -10.7493 -1.8256 22 1 9.6683 -10.8458 -2.8728 23 6 10.4246 -12.1155 -1.2812 24 6 11.9697 -11.9992 -1.3867 25 6 12.1720 -10.4918 -1.0907 26 8 11.0515 -9.8354 -1.7045 27 7 3.2321 -3.8113 -0.9394 28 1 -0.4850 0.8401 -0.0004 29 1 0.6242 -2.5609 0.8844 30 1 0.6244 -2.5529 -0.8956 31 1 1.5837 -4.7547 1.7267 32 1 3.5540 -6.3485 1.0459 33 1 5.3178 -5.0162 -2.0835 34 1 6.4228 -7.4159 -2.6146 35 1 7.5301 -6.4736 -1.5879 36 1 7.4384 -8.2501 0.1401 37 1 6.3311 -9.1919 -0.8871 38 1 9.0852 -10.0561 0.0189 39 1 7.9773 -10.9972 -1.0082 40 1 10.1154 -12.2468 -0.2443 41 1 10.0534 -12.9295 -1.9039 42 1 12.3151 -12.2527 -2.3890 43 1 12.4630 -12.6166 -0.6360 44 1 13.1046 -10.1413 -1.5330 45 1 12.1731 -10.3126 -0.0156 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117718630.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:18 Heat of formation + Delta-G solvation = -51.312827 kcal Electronic energy + Delta-G solvation = -25724.675807 eV Core-core repulsion = 21744.223122 eV Total energy + Delta-G solvation = -3980.452685 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.70672 -40.00133 -39.37303 -37.77218 -34.77759 -33.37917 -32.73483 -32.32954 -31.02648 -30.28139 -29.32080 -26.77323 -25.86992 -24.26546 -22.84178 -22.20708 -21.63543 -21.22079 -20.11295 -19.52987 -17.63902 -17.29713 -16.73333 -16.59068 -16.46938 -16.33135 -15.96290 -15.35702 -15.23911 -15.03503 -14.32595 -14.23022 -14.05780 -13.78919 -13.70529 -13.10678 -12.88660 -12.76710 -12.34204 -12.24286 -12.24027 -11.85640 -11.75257 -11.73744 -11.53948 -11.46153 -11.31382 -11.04249 -10.88920 -10.44417 -10.25914 -10.02656 -9.89602 -9.84653 -9.61068 -9.49879 -8.63600 -8.14191 -7.48200 -6.24681 -4.29782 2.29976 2.62370 2.92043 3.24049 3.26467 3.29821 3.35263 3.49841 3.71240 3.95271 3.96286 4.31280 4.32933 4.42508 4.57053 4.66696 4.72966 4.81315 4.87364 4.99221 5.08809 5.10568 5.12155 5.17298 5.26505 5.29599 5.34267 5.45614 5.55265 5.58689 5.61297 5.68934 5.80413 6.26070 6.47996 6.59261 6.61379 6.85305 6.93044 7.04779 7.39847 7.55431 7.70697 7.88306 8.03733 8.22244 8.62677 8.79791 9.35944 10.84037 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.030225 B = 0.001666 C = 0.001605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.166140 B =16799.627955 C =17436.782995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.062 3.938 3 Si 0.909 3.091 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.529 4.529 8 H 0.069 0.931 9 C 0.258 3.742 10 N -0.318 5.318 11 C 0.051 3.949 12 C -0.288 4.288 13 C 0.256 3.744 14 N -0.629 5.629 15 C 0.524 3.476 16 O -0.522 6.522 17 C -0.134 4.134 18 C 0.078 3.922 19 O -0.382 6.382 20 C 0.055 3.945 21 C 0.082 3.918 22 H 0.089 0.911 23 C -0.150 4.150 24 C -0.156 4.156 25 C 0.045 3.955 26 O -0.367 6.367 27 N -0.304 5.304 28 H 0.267 0.733 29 H 0.057 0.943 30 H 0.045 0.955 31 H 0.168 0.832 32 H 0.160 0.840 33 H 0.413 0.587 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.060 0.940 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.034 -24.459 -2.636 31.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.736 3.264 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.568 4.568 8 H 0.087 0.913 9 C 0.140 3.860 10 N -0.100 5.100 11 C -0.099 4.099 12 C -0.319 4.319 13 C 0.003 3.997 14 N -0.277 5.277 15 C 0.310 3.690 16 O -0.396 6.396 17 C -0.174 4.174 18 C 0.001 3.999 19 O -0.301 6.301 20 C -0.022 4.022 21 C 0.025 3.975 22 H 0.107 0.893 23 C -0.187 4.187 24 C -0.194 4.194 25 C -0.031 4.031 26 O -0.286 6.286 27 N -0.135 5.135 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.185 0.815 32 H 0.177 0.823 33 H 0.248 0.752 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.099 0.901 41 H 0.105 0.895 42 H 0.098 0.902 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 19.468 -23.369 -2.974 30.561 hybrid contribution 0.393 0.270 0.491 0.684 sum 19.861 -23.099 -2.484 30.565 Atomic orbital electron populations 1.69920 1.06044 1.27632 1.49736 1.24946 0.94988 0.99557 0.94568 0.86317 0.79654 0.82087 0.78375 1.20325 1.20977 1.19725 1.21267 0.94011 0.89393 1.52110 0.91294 1.19753 0.85616 0.81295 0.99291 1.49091 1.23150 1.19677 1.18100 1.22567 1.00345 0.90211 0.96756 1.21517 1.02269 1.06333 1.01789 1.19121 0.91506 0.94327 0.94784 1.42452 1.29789 1.24817 1.30628 1.20366 0.84077 0.79796 0.84753 1.90650 1.62876 1.60112 1.25975 1.21398 0.96685 0.98098 1.01256 1.22109 0.88452 0.93919 0.95403 1.87850 1.48437 1.39803 1.54017 1.22910 0.95309 0.87029 0.96962 1.22778 0.86630 0.87999 1.00133 0.89298 1.23119 0.95899 0.96998 1.02716 1.23271 0.95660 0.97232 1.03205 1.23426 0.90478 0.91229 0.97981 1.88559 1.22255 1.36363 1.81472 1.77337 1.03557 1.16294 1.16304 0.92322 0.92505 0.93686 0.81474 0.82308 0.75199 0.87642 0.87532 0.92235 0.92293 0.92777 0.92176 0.90109 0.89481 0.90166 0.89734 0.89621 0.92195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.35 13.29 55.43 0.74 -24.62 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.91 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.53 -14.80 9.24 -34.44 -0.32 -15.11 16 8 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 9 C 0.26 6.58 6.26 -5.20 -0.03 6.55 16 10 N -0.32 -7.44 3.67 -62.57 -0.23 -7.67 16 11 C 0.05 1.03 11.43 -17.24 -0.20 0.83 16 12 C -0.29 -5.72 9.61 -39.83 -0.38 -6.10 16 13 C 0.26 5.14 8.11 -154.38 -1.25 3.89 16 14 N -0.63 -9.61 5.45 -11.13 -0.06 -9.67 16 15 C 0.52 7.29 7.80 -10.99 -0.09 7.20 16 16 O -0.52 -8.81 13.11 5.55 0.07 -8.74 16 17 C -0.13 -1.32 6.07 -27.89 -0.17 -1.49 16 18 C 0.08 0.81 5.23 37.16 0.19 1.01 16 19 O -0.38 -4.11 10.33 -37.79 -0.39 -4.50 16 20 C 0.05 0.45 5.47 37.15 0.20 0.66 16 21 C 0.08 0.62 3.81 -26.01 -0.10 0.52 16 22 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 23 C -0.15 -0.69 6.54 -24.79 -0.16 -0.86 16 24 C -0.16 -0.67 7.16 -24.48 -0.18 -0.84 16 25 C 0.05 0.29 7.78 38.18 0.30 0.58 16 26 O -0.37 -3.61 11.00 -37.79 -0.42 -4.02 16 27 N -0.30 -7.03 12.42 31.44 0.39 -6.64 16 28 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 30 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.17 2.73 8.06 -52.48 -0.42 2.31 16 32 H 0.16 3.04 5.92 -52.49 -0.31 2.73 16 33 H 0.41 5.08 8.82 -40.82 -0.36 4.72 16 34 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.11 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 37 H 0.06 0.60 8.10 -51.92 -0.42 0.18 16 38 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.08 0.33 7.85 -51.93 -0.41 -0.08 16 41 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 44 H 0.09 0.45 8.14 -51.92 -0.42 0.03 16 45 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 380.68 15.07 5.74 5.74 Total: -1.00 -34.12 380.68 -8.41 -42.54 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -6.96 Total: 2.72 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -2.28 Total: -1.55 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: 0.84 Total: -48.60 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.73 Total: -17.26 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.12 -8.41 -42.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117718630.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.777 kcal (2) G-P(sol) polarization free energy of solvation -34.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds