Wall clock time and date at job start Tue Mar 31 2020 14:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 C 1.34970 * 125.97934 * 124.71857 * 10 9 7 12 12 C 1.35234 * 107.86531 * 179.87401 * 11 10 9 13 13 C 1.40411 * 107.86728 * 0.38220 * 12 11 10 14 14 N 1.40159 * 125.97546 * 179.76622 * 13 12 11 15 15 C 1.34778 * 119.99905 * 0.02562 * 14 13 12 16 16 O 1.21291 * 120.00022 * 0.02562 * 15 14 13 17 17 C 1.50695 * 119.99996 * 180.02562 * 15 14 13 18 18 C 1.52999 * 109.47300 * 180.02562 * 17 15 14 19 19 O 1.42896 * 109.47176 * 179.97438 * 18 17 15 20 20 C 1.42909 * 113.99979 * 180.02562 * 19 18 17 21 21 C 1.52992 * 109.47284 * 180.02562 * 20 19 18 22 22 H 1.09000 * 109.82535 * 305.56705 * 21 20 19 23 23 C 1.54384 * 109.83236 * 184.58600 * 21 20 19 24 24 C 1.55302 * 102.25334 * 219.12825 * 23 21 20 25 25 C 1.54946 * 100.94193 * 34.13405 * 24 23 21 26 26 O 1.43240 * 109.83509 * 66.45277 * 21 20 19 27 27 N 1.31223 * 108.05096 * 359.76291 * 13 12 11 28 28 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 30 30 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 31 31 H 1.08004 * 126.06260 * 0.02562 * 11 10 9 32 32 H 1.07999 * 126.06674 * 180.17090 * 12 11 10 33 33 H 0.96998 * 120.00228 * 180.02562 * 14 13 12 34 34 H 1.08995 * 109.47485 * 300.00750 * 17 15 14 35 35 H 1.09001 * 109.47258 * 60.00803 * 17 15 14 36 36 H 1.08995 * 109.47212 * 300.00609 * 18 17 15 37 37 H 1.09008 * 109.46900 * 60.00274 * 18 17 15 38 38 H 1.09006 * 109.46908 * 300.00439 * 20 19 18 39 39 H 1.08996 * 109.46952 * 59.99488 * 20 19 18 40 40 H 1.08998 * 110.84590 * 337.31662 * 23 21 20 41 41 H 1.08997 * 110.84520 * 100.93844 * 23 21 20 42 42 H 1.09000 * 111.12455 * 276.21242 * 24 23 21 43 43 H 1.09001 * 111.16506 * 152.06510 * 24 23 21 44 44 H 1.09007 * 110.30620 * 204.64185 * 25 24 23 45 45 H 1.08992 * 110.39845 * 82.51455 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 6 2.2452 -4.6236 0.8830 12 6 3.2607 -5.4449 0.5323 13 6 3.8692 -4.9118 -0.6154 14 7 4.9653 -5.4593 -1.2959 15 6 5.5296 -6.6015 -0.8560 16 8 5.0885 -7.1558 0.1286 17 6 6.7085 -7.1899 -1.5873 18 6 7.1529 -8.4757 -0.8873 19 8 8.2704 -9.0340 -1.5812 20 6 8.7659 -10.2448 -1.0061 21 6 9.9552 -10.7493 -1.8256 22 1 9.6683 -10.8458 -2.8728 23 6 10.4246 -12.1155 -1.2812 24 6 11.9697 -11.9992 -1.3867 25 6 12.1720 -10.4918 -1.0907 26 8 11.0515 -9.8354 -1.7045 27 7 3.2321 -3.8113 -0.9394 28 1 -0.4850 0.8401 -0.0004 29 1 0.6242 -2.5609 0.8844 30 1 0.6244 -2.5529 -0.8956 31 1 1.5837 -4.7547 1.7267 32 1 3.5540 -6.3485 1.0459 33 1 5.3178 -5.0162 -2.0835 34 1 6.4228 -7.4159 -2.6146 35 1 7.5301 -6.4736 -1.5879 36 1 7.4384 -8.2501 0.1401 37 1 6.3311 -9.1919 -0.8871 38 1 9.0852 -10.0561 0.0189 39 1 7.9773 -10.9972 -1.0082 40 1 10.1154 -12.2468 -0.2443 41 1 10.0534 -12.9295 -1.9039 42 1 12.3151 -12.2527 -2.3890 43 1 12.4630 -12.6166 -0.6360 44 1 13.1046 -10.1413 -1.5330 45 1 12.1731 -10.3126 -0.0156 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117718630.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:18 Heat of formation + Delta-G solvation = -74.157205 kcal Electronic energy + Delta-G solvation = -25725.666413 eV Core-core repulsion = 21744.223122 eV Total energy + Delta-G solvation = -3981.443291 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.22729 -40.74847 -40.46144 -38.55263 -36.25649 -35.27822 -33.48193 -33.08204 -32.51584 -31.08410 -30.91924 -28.60374 -26.54066 -25.48105 -24.46992 -22.71046 -22.58427 -22.09827 -21.62681 -20.87953 -18.70102 -18.45829 -18.18755 -18.03464 -17.23847 -17.11338 -16.97417 -16.83601 -16.32352 -16.06677 -15.81434 -15.58112 -14.99554 -14.75928 -14.46412 -14.40238 -14.21838 -13.83157 -13.81540 -13.62493 -13.49465 -12.93814 -12.74004 -12.65401 -12.41255 -12.30654 -12.29678 -12.17757 -12.06668 -12.03959 -11.69495 -11.62731 -11.39818 -10.93008 -10.72753 -10.61350 -10.46379 -9.76940 -9.13534 -8.33838 -6.47995 0.92760 1.31383 1.37887 1.38625 1.44796 1.50910 2.19971 2.22065 2.36018 2.73626 2.97547 2.98251 3.57585 3.59264 3.81084 3.96661 3.97783 4.04992 4.17349 4.19236 4.26874 4.31842 4.41342 4.49511 4.51948 4.64906 4.75843 4.82143 4.82261 4.83500 4.89255 4.92193 4.92379 4.96621 5.02244 5.05770 5.16258 5.26941 5.55938 5.79088 5.92149 6.05498 6.21624 6.25035 6.29497 6.63915 6.97714 7.11085 7.22083 8.73805 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.030225 B = 0.001666 C = 0.001605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.166140 B =16799.627955 C =17436.782995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.019 3.981 3 Si 0.972 3.028 4 H -0.272 1.272 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.550 4.550 8 H 0.052 0.948 9 C 0.272 3.728 10 N -0.344 5.344 11 C 0.056 3.944 12 C -0.294 4.294 13 C 0.264 3.736 14 N -0.624 5.624 15 C 0.527 3.473 16 O -0.550 6.550 17 C -0.121 4.121 18 C 0.081 3.919 19 O -0.397 6.397 20 C 0.049 3.951 21 C 0.076 3.924 22 H 0.085 0.915 23 C -0.144 4.144 24 C -0.150 4.150 25 C 0.035 3.965 26 O -0.401 6.401 27 N -0.346 5.346 28 H 0.273 0.727 29 H 0.059 0.941 30 H 0.022 0.978 31 H 0.201 0.799 32 H 0.169 0.831 33 H 0.426 0.574 34 H 0.130 0.870 35 H 0.124 0.876 36 H 0.050 0.950 37 H 0.059 0.941 38 H 0.052 0.948 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.103 0.897 42 H 0.084 0.916 43 H 0.102 0.898 44 H 0.091 0.909 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.497 -25.551 -2.664 33.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.181 4.181 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.588 4.588 8 H 0.070 0.930 9 C 0.153 3.847 10 N -0.126 5.126 11 C -0.093 4.093 12 C -0.325 4.325 13 C 0.009 3.991 14 N -0.274 5.274 15 C 0.316 3.684 16 O -0.426 6.426 17 C -0.161 4.161 18 C 0.004 3.996 19 O -0.316 6.316 20 C -0.028 4.028 21 C 0.019 3.981 22 H 0.103 0.897 23 C -0.182 4.182 24 C -0.187 4.187 25 C -0.041 4.041 26 O -0.321 6.321 27 N -0.177 5.177 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.040 0.960 31 H 0.218 0.782 32 H 0.186 0.814 33 H 0.264 0.736 34 H 0.148 0.852 35 H 0.142 0.858 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.096 0.904 40 H 0.106 0.894 41 H 0.121 0.879 42 H 0.102 0.898 43 H 0.121 0.879 44 H 0.109 0.891 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 20.955 -24.489 -3.016 32.372 hybrid contribution 0.011 0.478 0.508 0.697 sum 20.966 -24.011 -2.508 31.975 Atomic orbital electron populations 1.69995 1.07196 1.28780 1.49872 1.25735 0.95847 1.02704 0.93838 0.85340 0.78341 0.78127 0.78557 1.19790 1.19632 1.19801 1.21414 0.93390 0.91025 1.52938 0.92977 1.19343 0.85682 0.81504 0.98138 1.48847 1.23827 1.20298 1.19609 1.23183 1.00528 0.88850 0.96713 1.21728 1.02301 1.06584 1.01915 1.19495 0.91756 0.93212 0.94629 1.42624 1.28603 1.25236 1.30917 1.21105 0.84295 0.78752 0.84272 1.90629 1.63860 1.60716 1.27412 1.21369 0.95098 0.97988 1.01648 1.22044 0.88511 0.94124 0.94972 1.87825 1.48443 1.40930 1.54422 1.23116 0.96140 0.86604 0.96914 1.22913 0.85987 0.89186 1.00024 0.89693 1.23135 0.96040 0.95683 1.03310 1.23269 0.95537 0.95873 1.04027 1.23616 0.89819 0.92653 0.97973 1.88514 1.23580 1.38135 1.81902 1.77256 1.04708 1.18226 1.17554 0.91817 0.92306 0.96024 0.78192 0.81408 0.73553 0.85192 0.85808 0.93181 0.92298 0.93019 0.90447 0.89405 0.87861 0.89772 0.87947 0.89110 0.92042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.26 13.29 21.45 0.28 -51.97 16 2 C 0.02 1.07 5.46 84.66 0.46 1.53 16 3 Si 0.97 43.84 29.54 68.60 2.03 45.87 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.55 -31.25 9.24 25.60 0.24 -31.01 16 8 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 9 C 0.27 14.22 6.26 85.64 0.54 14.76 16 10 N -0.34 -16.29 3.67 -351.86 -1.29 -17.58 16 11 C 0.06 2.21 11.43 83.52 0.96 3.17 16 12 C -0.29 -11.50 9.61 22.11 0.21 -11.29 16 13 C 0.26 10.50 8.11 133.32 1.08 11.59 16 14 N -0.62 -18.36 5.45 -307.51 -1.68 -20.04 16 15 C 0.53 13.88 7.80 87.66 0.68 14.57 16 16 O -0.55 -17.99 13.11 -3.07 -0.04 -18.03 16 17 C -0.12 -2.13 6.07 29.85 0.18 -1.95 16 18 C 0.08 1.56 5.23 71.98 0.38 1.94 16 19 O -0.40 -8.05 10.33 -146.53 -1.51 -9.56 16 20 C 0.05 0.75 5.47 71.98 0.39 1.15 16 21 C 0.08 1.08 3.81 31.06 0.12 1.20 16 22 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 23 C -0.14 -1.05 6.54 31.85 0.21 -0.84 16 24 C -0.15 -0.99 7.16 32.05 0.23 -0.76 16 25 C 0.04 0.41 7.78 72.65 0.56 0.98 16 26 O -0.40 -7.69 11.00 -146.53 -1.61 -9.30 16 27 N -0.35 -16.23 12.42 -54.45 -0.68 -16.90 16 28 H 0.27 14.48 8.31 -92.70 -0.77 13.71 16 29 H 0.06 3.00 8.07 -2.38 -0.02 2.98 16 30 H 0.02 1.21 8.14 -2.39 -0.02 1.20 16 31 H 0.20 6.26 8.06 -2.91 -0.02 6.24 16 32 H 0.17 6.27 5.92 -2.91 -0.02 6.25 16 33 H 0.43 9.95 8.82 -92.71 -0.82 9.13 16 34 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.12 1.83 8.14 -2.39 -0.02 1.82 16 36 H 0.05 1.05 8.10 -2.39 -0.02 1.03 16 37 H 0.06 1.13 8.10 -2.38 -0.02 1.11 16 38 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 39 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.09 0.52 7.85 -2.39 -0.02 0.50 16 41 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 42 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 43 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 44 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 45 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -73.89 380.68 1.92 -71.97 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: 0.18 Total: 20.54 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: 6.24 Total: 5.01 kcal Atomic # 7 Polarization: -103.14 SS G_CDS: -3.36 Total: -106.49 kcal Atomic # 8 Polarization: -33.72 SS G_CDS: -3.17 Total: -36.89 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -73.89 1.92 -71.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117718630.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.189 kcal (2) G-P(sol) polarization free energy of solvation -73.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds