Wall clock time and date at job start Tue Mar 31 2020 13:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36889 * 126.39912 * 2 1 4 4 C 1.34668 * 106.81447 * 180.25093 * 3 2 1 5 5 N 1.34124 * 108.02478 * 359.74499 * 4 3 2 6 6 C 1.30504 * 109.25456 * 359.97438 * 5 4 3 7 7 C 1.50695 * 125.64919 * 180.02562 * 6 5 4 8 8 C 1.53008 * 109.47281 * 90.02229 * 7 6 5 9 9 H 1.08997 * 109.49658 * 304.93571 * 8 7 6 10 10 C 1.53040 * 109.52376 * 184.85531 * 8 7 6 11 11 C 1.53038 * 109.53752 * 178.66891 * 10 8 7 12 12 C 1.52760 * 109.38499 * 61.23643 * 11 10 8 13 13 N 1.46929 * 109.01036 * 305.59109 * 12 11 10 14 14 C 1.34769 * 120.62932 * 233.57902 * 13 12 11 15 15 O 1.21282 * 119.99850 * 179.71737 * 14 13 12 16 16 C 1.50702 * 120.00466 * 359.72164 * 14 13 12 17 17 S 1.81000 * 109.47238 * 179.97438 * 16 14 13 18 18 C 1.76205 * 99.99610 * 179.97438 * 17 16 14 19 19 H 1.07998 * 120.00040 * 0.02562 * 18 17 16 20 20 C 1.38796 * 119.99527 * 179.97438 * 18 17 16 21 21 N 1.31625 * 120.00398 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99780 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47287 * 90.00177 * 22 20 18 24 24 H 1.48500 * 109.47266 * 210.00229 * 22 20 18 25 25 H 1.48498 * 109.47178 * 329.99930 * 22 20 18 26 26 C 1.46924 * 118.73738 * 53.30576 * 13 12 11 27 27 H 1.08995 * 109.47118 * 270.18758 * 1 2 3 28 28 H 1.08998 * 109.46552 * 30.18694 * 1 2 3 29 29 H 1.08996 * 109.46668 * 150.18904 * 1 2 3 30 30 H 1.07998 * 126.58648 * 359.97438 * 3 2 1 31 31 H 1.08004 * 125.98479 * 179.76165 * 4 3 2 32 32 H 1.08995 * 109.47177 * 330.02592 * 7 6 5 33 33 H 1.08998 * 109.47099 * 210.02331 * 7 6 5 34 34 H 1.08999 * 109.45944 * 298.68884 * 10 8 7 35 35 H 1.08996 * 109.45856 * 58.64835 * 10 8 7 36 36 H 1.08997 * 109.50265 * 181.31898 * 11 10 8 37 37 H 1.09003 * 109.49620 * 301.38397 * 11 10 8 38 38 H 1.08995 * 109.51094 * 185.70598 * 12 11 10 39 39 H 1.09008 * 109.43072 * 65.42313 * 12 11 10 40 40 H 1.09004 * 109.46923 * 59.99646 * 16 14 13 41 41 H 1.09004 * 109.46818 * 300.00196 * 16 14 13 42 42 H 0.97006 * 120.00587 * 179.97438 * 21 20 18 43 43 H 1.09005 * 109.58550 * 66.43060 * 26 13 12 44 44 H 1.08999 * 109.58964 * 186.71425 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5461 0.6504 -0.0056 5 7 3.5096 -0.6903 -0.0033 6 6 2.2663 -1.0870 0.0041 7 6 1.8018 -2.5206 0.0095 8 6 1.6518 -3.0027 1.4538 9 1 2.5893 -2.8489 1.9880 10 6 1.2977 -4.4916 1.4618 11 6 1.1801 -4.9819 2.9067 12 6 0.0635 -4.2151 3.6131 13 7 0.3166 -2.7736 3.4834 14 6 0.3532 -1.9821 4.5735 15 8 0.5681 -0.7945 4.4536 16 6 0.1272 -2.5726 5.9415 17 16 0.2388 -1.2656 7.1887 18 6 -0.0569 -2.2089 8.6474 19 1 -0.2333 -3.2720 8.5765 20 6 -0.0620 -1.5856 9.8875 21 7 0.1535 -0.2900 9.9740 22 14 -0.3748 -2.5856 11.4341 23 1 0.9165 -3.0875 11.9686 24 1 -1.0328 -1.7288 12.4530 25 1 -1.2568 -3.7355 11.1101 26 6 0.5350 -2.2126 2.1431 27 1 -0.3633 0.0034 1.0276 28 1 -0.3632 0.8883 -0.5167 29 1 -0.3632 -0.8917 -0.5109 30 1 1.9613 2.1345 -0.0004 31 1 4.4369 1.2611 -0.0108 32 1 2.5339 -3.1416 -0.5066 33 1 0.8407 -2.5929 -0.4995 34 1 0.3477 -4.6416 0.9490 35 1 2.0791 -5.0534 0.9501 36 1 0.9510 -6.0475 2.9119 37 1 2.1223 -4.8099 3.4271 38 1 0.0445 -4.4893 4.6678 39 1 -0.8931 -4.4611 3.1521 40 1 0.8858 -3.3297 6.1402 41 1 -0.8615 -3.0297 5.9811 42 1 0.1495 0.1457 10.8407 43 1 -0.3824 -2.2920 1.5598 44 1 0.8244 -1.1652 2.2282 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119166873.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:29 Heat of formation + Delta-G solvation = 17.849278 kcal Electronic energy + Delta-G solvation = -25262.068071 eV Core-core repulsion = 21727.367351 eV Total energy + Delta-G solvation = -3534.700720 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.21747 -39.97529 -37.51026 -34.44234 -34.02780 -32.43777 -32.15167 -30.28677 -28.99098 -27.38531 -26.18499 -25.58729 -25.02317 -22.72782 -21.45252 -20.80239 -19.63280 -19.08920 -17.69977 -17.17067 -16.81248 -15.89155 -15.85059 -15.25400 -14.90454 -14.80933 -14.66387 -14.25557 -14.01179 -13.93516 -13.64668 -13.35258 -13.22492 -12.96367 -12.83830 -12.74006 -12.60731 -12.54485 -11.96603 -11.90103 -11.29174 -11.06983 -11.03877 -11.00631 -10.94247 -10.77192 -10.64840 -10.03103 -9.80854 -9.66789 -9.36857 -9.07216 -8.54400 -8.40913 -8.23075 -6.50798 -6.22057 -3.92846 1.96233 2.67010 2.91072 3.04140 3.09887 3.21911 3.25490 3.29740 3.58715 4.15956 4.19633 4.47383 4.49005 4.56391 4.63283 4.75699 4.82946 4.88934 5.02111 5.06273 5.08630 5.13080 5.20725 5.22871 5.35868 5.41118 5.46625 5.47200 5.56622 5.62257 5.67557 5.72729 5.82065 5.86952 5.92794 5.97358 6.10417 6.17128 6.21025 6.61841 6.70093 7.07730 7.54429 7.59003 8.05005 8.34508 8.54798 9.23116 10.85357 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017531 B = 0.003036 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.817059 B = 9219.690740 C =10230.177498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.455 5.455 3 C -0.055 4.055 4 C -0.029 4.029 5 N -0.489 5.489 6 C 0.206 3.794 7 C -0.025 4.025 8 C -0.099 4.099 9 H 0.085 0.915 10 C -0.111 4.111 11 C -0.136 4.136 12 C 0.107 3.893 13 N -0.619 5.619 14 C 0.535 3.465 15 O -0.517 6.517 16 C -0.150 4.150 17 S -0.062 6.062 18 C -0.535 4.535 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.116 3.884 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.173 0.827 31 H 0.169 0.831 32 H 0.098 0.902 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.066 0.934 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.268 0.732 43 H 0.059 0.941 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.977 -6.859 -23.169 24.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.138 5.138 3 C -0.188 4.188 4 C -0.177 4.177 5 N -0.208 5.208 6 C -0.056 4.056 7 C -0.065 4.065 8 C -0.120 4.120 9 H 0.103 0.897 10 C -0.149 4.149 11 C -0.175 4.175 12 C -0.017 4.017 13 N -0.355 5.355 14 C 0.323 3.677 15 O -0.392 6.392 16 C -0.300 4.300 17 S 0.165 5.835 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.202 1.202 24 H -0.208 1.208 25 H -0.197 1.197 26 C -0.007 4.007 27 H 0.102 0.898 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.191 0.809 31 H 0.186 0.814 32 H 0.117 0.883 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.108 0.892 39 H 0.084 0.916 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.135 -5.418 -23.221 23.845 hybrid contribution -1.158 -1.308 1.200 2.119 sum -1.292 -6.726 -22.021 23.061 Atomic orbital electron populations 1.22199 0.76879 1.04401 1.04330 1.45246 1.07464 1.06679 1.54425 1.22703 0.91367 0.92576 1.12178 1.22264 0.96433 0.91158 1.07831 1.70209 1.18461 1.12109 1.20027 1.23141 0.85908 0.90781 1.05789 1.20013 1.01794 0.87294 0.97365 1.21581 1.00302 0.95440 0.94643 0.89694 1.21544 1.01891 0.94540 0.96908 1.21854 0.99877 0.99752 0.95985 1.21650 0.97872 0.79863 1.02274 1.48077 1.73024 1.08366 1.06047 1.20359 0.75469 0.86449 0.85452 1.90689 1.47124 1.15389 1.85968 1.23549 1.04460 1.05901 0.96113 1.85414 1.93602 1.08580 0.95886 1.22856 1.56543 0.96561 0.92383 0.90948 1.24988 0.94638 0.95174 0.98744 1.70017 1.46088 1.08754 1.25411 0.86170 0.78533 0.79528 0.81287 1.20245 1.20751 1.19686 1.21706 0.96911 0.99243 0.82860 0.89758 0.89551 0.89561 0.80944 0.81420 0.88347 0.90371 0.91650 0.91246 0.90458 0.91147 0.89176 0.91560 0.89264 0.89287 0.92180 0.92286 0.89152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.47 9.52 59.85 0.57 1.04 16 2 N -0.46 -4.93 2.83 -121.28 -0.34 -5.28 16 3 C -0.06 -0.62 11.58 -16.56 -0.19 -0.81 16 4 C -0.03 -0.37 11.87 -17.81 -0.21 -0.58 16 5 N -0.49 -7.10 11.25 -10.82 -0.12 -7.22 16 6 C 0.21 2.49 6.39 -155.42 -0.99 1.50 16 7 C -0.03 -0.22 5.01 -27.88 -0.14 -0.36 16 8 C -0.10 -1.01 2.33 -90.50 -0.21 -1.22 16 9 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 10 C -0.11 -0.86 5.17 -26.69 -0.14 -1.00 16 11 C -0.14 -1.19 6.06 -26.83 -0.16 -1.35 16 12 C 0.11 1.14 6.31 -3.93 -0.02 1.11 16 13 N -0.62 -8.84 2.98 -173.03 -0.52 -9.36 16 14 C 0.53 10.37 7.72 -10.99 -0.08 10.28 16 15 O -0.52 -12.07 15.27 5.56 0.08 -11.99 16 16 C -0.15 -3.08 4.50 36.01 0.16 -2.92 16 17 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 18 C -0.54 -15.29 9.50 30.94 0.29 -15.00 16 19 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 21 N -0.87 -26.26 13.22 55.49 0.73 -25.53 16 22 Si 0.92 21.41 29.55 -169.99 -5.02 16.39 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 26 C 0.12 1.41 4.13 -3.71 -0.02 1.39 16 27 H 0.08 0.73 6.78 -51.93 -0.35 0.38 16 28 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.09 0.44 7.04 -51.93 -0.37 0.08 16 30 H 0.17 1.42 8.06 -52.49 -0.42 1.00 16 31 H 0.17 1.76 8.06 -52.48 -0.42 1.33 16 32 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 0.49 7.06 -51.93 -0.37 0.13 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.09 1.00 5.93 -51.93 -0.31 0.70 16 39 H 0.07 0.59 8.14 -51.92 -0.42 0.16 16 40 H 0.09 1.71 7.68 -51.91 -0.40 1.31 16 41 H 0.09 1.68 7.95 -51.92 -0.41 1.27 16 42 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 43 H 0.06 0.57 7.86 -51.93 -0.41 0.16 16 44 H 0.09 1.37 4.97 -51.93 -0.26 1.11 16 LS Contribution 365.22 15.07 5.50 5.50 Total: -1.00 -37.29 365.22 -9.78 -47.06 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -6.64 Total: 0.21 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -1.24 Total: -5.89 kcal Atomic # 7 Polarization: -47.14 SS G_CDS: -0.25 Total: -47.38 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.08 Total: -11.99 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -37.29 -9.78 -47.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119166873.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.912 kcal (2) G-P(sol) polarization free energy of solvation -37.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds