Wall clock time and date at job start Tue Mar 31 2020 13:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36889 * 126.39912 * 2 1 4 4 C 1.34668 * 106.81447 * 180.25093 * 3 2 1 5 5 N 1.34124 * 108.02478 * 359.74499 * 4 3 2 6 6 C 1.30504 * 109.25456 * 359.97438 * 5 4 3 7 7 C 1.50695 * 125.64919 * 180.02562 * 6 5 4 8 8 C 1.53008 * 109.47281 * 90.02229 * 7 6 5 9 9 H 1.08997 * 109.49658 * 304.93571 * 8 7 6 10 10 C 1.53040 * 109.52376 * 184.85531 * 8 7 6 11 11 C 1.53038 * 109.53752 * 178.66891 * 10 8 7 12 12 C 1.52760 * 109.38499 * 61.23643 * 11 10 8 13 13 N 1.46929 * 109.01036 * 305.59109 * 12 11 10 14 14 C 1.34769 * 120.62932 * 233.57902 * 13 12 11 15 15 O 1.21282 * 119.99850 * 179.71737 * 14 13 12 16 16 C 1.50702 * 120.00466 * 359.72164 * 14 13 12 17 17 S 1.81000 * 109.47238 * 179.97438 * 16 14 13 18 18 C 1.76205 * 99.99610 * 179.97438 * 17 16 14 19 19 H 1.07998 * 120.00040 * 0.02562 * 18 17 16 20 20 C 1.38796 * 119.99527 * 179.97438 * 18 17 16 21 21 N 1.31625 * 120.00398 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99780 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47287 * 90.00177 * 22 20 18 24 24 H 1.48500 * 109.47266 * 210.00229 * 22 20 18 25 25 H 1.48498 * 109.47178 * 329.99930 * 22 20 18 26 26 C 1.46924 * 118.73738 * 53.30576 * 13 12 11 27 27 H 1.08995 * 109.47118 * 270.18758 * 1 2 3 28 28 H 1.08998 * 109.46552 * 30.18694 * 1 2 3 29 29 H 1.08996 * 109.46668 * 150.18904 * 1 2 3 30 30 H 1.07998 * 126.58648 * 359.97438 * 3 2 1 31 31 H 1.08004 * 125.98479 * 179.76165 * 4 3 2 32 32 H 1.08995 * 109.47177 * 330.02592 * 7 6 5 33 33 H 1.08998 * 109.47099 * 210.02331 * 7 6 5 34 34 H 1.08999 * 109.45944 * 298.68884 * 10 8 7 35 35 H 1.08996 * 109.45856 * 58.64835 * 10 8 7 36 36 H 1.08997 * 109.50265 * 181.31898 * 11 10 8 37 37 H 1.09003 * 109.49620 * 301.38397 * 11 10 8 38 38 H 1.08995 * 109.51094 * 185.70598 * 12 11 10 39 39 H 1.09008 * 109.43072 * 65.42313 * 12 11 10 40 40 H 1.09004 * 109.46923 * 59.99646 * 16 14 13 41 41 H 1.09004 * 109.46818 * 300.00196 * 16 14 13 42 42 H 0.97006 * 120.00587 * 179.97438 * 21 20 18 43 43 H 1.09005 * 109.58550 * 66.43060 * 26 13 12 44 44 H 1.08999 * 109.58964 * 186.71425 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5461 0.6504 -0.0056 5 7 3.5096 -0.6903 -0.0033 6 6 2.2663 -1.0870 0.0041 7 6 1.8018 -2.5206 0.0095 8 6 1.6518 -3.0027 1.4538 9 1 2.5893 -2.8489 1.9880 10 6 1.2977 -4.4916 1.4618 11 6 1.1801 -4.9819 2.9067 12 6 0.0635 -4.2151 3.6131 13 7 0.3166 -2.7736 3.4834 14 6 0.3532 -1.9821 4.5735 15 8 0.5681 -0.7945 4.4536 16 6 0.1272 -2.5726 5.9415 17 16 0.2388 -1.2656 7.1887 18 6 -0.0569 -2.2089 8.6474 19 1 -0.2333 -3.2720 8.5765 20 6 -0.0620 -1.5856 9.8875 21 7 0.1535 -0.2900 9.9740 22 14 -0.3748 -2.5856 11.4341 23 1 0.9165 -3.0875 11.9686 24 1 -1.0328 -1.7288 12.4530 25 1 -1.2568 -3.7355 11.1101 26 6 0.5350 -2.2126 2.1431 27 1 -0.3633 0.0034 1.0276 28 1 -0.3632 0.8883 -0.5167 29 1 -0.3632 -0.8917 -0.5109 30 1 1.9613 2.1345 -0.0004 31 1 4.4369 1.2611 -0.0108 32 1 2.5339 -3.1416 -0.5066 33 1 0.8407 -2.5929 -0.4995 34 1 0.3477 -4.6416 0.9490 35 1 2.0791 -5.0534 0.9501 36 1 0.9510 -6.0475 2.9119 37 1 2.1223 -4.8099 3.4271 38 1 0.0445 -4.4893 4.6678 39 1 -0.8931 -4.4611 3.1521 40 1 0.8858 -3.3297 6.1402 41 1 -0.8615 -3.0297 5.9811 42 1 0.1495 0.1457 10.8407 43 1 -0.3824 -2.2920 1.5598 44 1 0.8244 -1.1652 2.2282 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119166873.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:29 Heat of formation + Delta-G solvation = -6.420848 kcal Electronic energy + Delta-G solvation = -25263.120503 eV Core-core repulsion = 21727.367351 eV Total energy + Delta-G solvation = -3535.753151 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.06759 -41.19397 -38.70096 -35.42350 -34.87237 -34.60495 -33.04753 -31.51617 -30.17480 -28.15504 -27.71166 -26.95802 -26.14043 -23.57650 -22.32107 -21.79811 -20.53234 -20.31087 -19.50395 -18.25178 -17.95175 -17.08258 -16.89442 -16.78905 -16.54793 -15.99050 -15.64716 -15.43005 -15.09611 -14.96610 -14.59581 -14.51358 -14.31398 -14.28192 -13.76920 -13.65881 -13.47557 -13.42971 -13.27352 -13.18170 -12.90497 -12.83137 -12.56031 -12.03386 -11.82880 -11.76780 -11.69366 -11.44768 -11.16039 -10.96541 -10.89323 -10.53014 -10.28931 -9.68337 -9.30293 -8.70407 -8.36248 -6.15462 1.10850 1.23605 1.41678 1.44383 1.53117 1.55698 1.94235 2.08281 2.17022 2.25766 2.97961 3.22860 3.40797 3.65557 3.73309 3.80888 3.93082 3.96326 4.06637 4.10592 4.21505 4.26050 4.32536 4.33524 4.40415 4.44585 4.55030 4.60926 4.66554 4.73119 4.76598 4.83043 4.89618 4.98403 5.09146 5.16028 5.26936 5.36043 5.39604 5.47599 5.55941 5.83243 6.17815 6.26474 6.29697 7.04662 7.11142 7.15950 8.73116 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017531 B = 0.003036 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.817059 B = 9219.690740 C =10230.177498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.457 5.457 3 C -0.059 4.059 4 C -0.062 4.062 5 N -0.534 5.534 6 C 0.195 3.805 7 C -0.020 4.020 8 C -0.089 4.089 9 H 0.043 0.957 10 C -0.105 4.105 11 C -0.133 4.133 12 C 0.096 3.904 13 N -0.606 5.606 14 C 0.529 3.471 15 O -0.570 6.570 16 C -0.121 4.121 17 S -0.155 6.155 18 C -0.546 4.546 19 H 0.083 0.917 20 C 0.013 3.987 21 N -0.912 5.912 22 Si 1.000 3.000 23 H -0.268 1.268 24 H -0.277 1.277 25 H -0.256 1.256 26 C 0.114 3.886 27 H 0.068 0.932 28 H 0.106 0.894 29 H 0.115 0.885 30 H 0.198 0.802 31 H 0.177 0.823 32 H 0.107 0.893 33 H 0.115 0.885 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.108 0.892 37 H 0.046 0.954 38 H 0.083 0.917 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.110 0.890 42 H 0.271 0.729 43 H 0.096 0.904 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.955 -10.171 -24.592 26.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.139 5.139 3 C -0.192 4.192 4 C -0.209 4.209 5 N -0.254 5.254 6 C -0.067 4.067 7 C -0.059 4.059 8 C -0.110 4.110 9 H 0.062 0.938 10 C -0.142 4.142 11 C -0.171 4.171 12 C -0.026 4.026 13 N -0.340 5.340 14 C 0.317 3.683 15 O -0.449 6.449 16 C -0.272 4.272 17 S 0.072 5.928 18 C -0.693 4.693 19 H 0.102 0.898 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.194 1.194 24 H -0.202 1.202 25 H -0.179 1.179 26 C -0.008 4.008 27 H 0.087 0.913 28 H 0.125 0.875 29 H 0.134 0.866 30 H 0.215 0.785 31 H 0.194 0.806 32 H 0.125 0.875 33 H 0.133 0.867 34 H 0.114 0.886 35 H 0.103 0.897 36 H 0.127 0.873 37 H 0.065 0.935 38 H 0.102 0.898 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.128 0.872 42 H 0.080 0.920 43 H 0.114 0.886 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.127 -8.784 -24.692 26.294 hybrid contribution -0.533 -0.302 1.520 1.639 sum -2.660 -9.086 -23.172 25.031 Atomic orbital electron populations 1.22452 0.74790 1.06985 1.04027 1.45487 1.08779 1.06164 1.53510 1.23149 0.91134 0.93920 1.11025 1.22618 0.97805 0.91226 1.09237 1.70147 1.20444 1.13055 1.21769 1.23758 0.85640 0.92382 1.04945 1.20150 1.03835 0.85305 0.96612 1.21459 0.97458 0.97345 0.94726 0.93846 1.21563 1.04008 0.92076 0.96572 1.21864 0.97878 1.01239 0.96146 1.22042 1.00356 0.77358 1.02811 1.48118 1.70688 1.09660 1.05512 1.20182 0.75723 0.86149 0.86239 1.90670 1.50010 1.17584 1.86640 1.23354 1.06056 1.03177 0.94661 1.85617 1.94036 1.13844 0.99322 1.23190 1.56549 0.96957 0.92649 0.89842 1.26152 0.93952 0.96354 1.02678 1.70189 1.47275 1.10930 1.26452 0.84934 0.78841 0.77996 0.76092 1.19373 1.20247 1.17942 1.21908 0.99252 0.97668 0.82004 0.91324 0.87513 0.86640 0.78521 0.80619 0.87462 0.86719 0.88590 0.89680 0.87349 0.93497 0.89839 0.88206 0.87898 0.87188 0.91980 0.88589 0.92620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.75 9.52 127.77 1.22 1.96 16 2 N -0.46 -9.60 2.83 -537.62 -1.52 -11.12 16 3 C -0.06 -1.33 11.58 83.08 0.96 -0.37 16 4 C -0.06 -1.66 11.87 83.52 0.99 -0.67 16 5 N -0.53 -16.07 11.25 -188.13 -2.12 -18.19 16 6 C 0.20 4.63 6.39 138.13 0.88 5.52 16 7 C -0.02 -0.30 5.01 29.85 0.15 -0.15 16 8 C -0.09 -1.65 2.33 -10.71 -0.02 -1.67 16 9 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 10 C -0.10 -1.17 5.17 30.62 0.16 -1.01 16 11 C -0.13 -1.86 6.06 30.53 0.19 -1.67 16 12 C 0.10 1.73 6.31 86.22 0.54 2.27 16 13 N -0.61 -16.48 2.98 -819.73 -2.44 -18.92 16 14 C 0.53 20.81 7.72 87.66 0.68 21.49 16 15 O -0.57 -27.92 15.27 -3.04 -0.05 -27.97 16 16 C -0.12 -5.01 4.50 71.24 0.32 -4.69 16 17 S -0.16 -8.86 20.57 -56.49 -1.16 -10.02 16 18 C -0.55 -31.51 9.50 67.95 0.65 -30.87 16 19 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 20 C 0.01 0.76 5.49 84.86 0.47 1.23 16 21 N -0.91 -56.66 13.22 21.65 0.29 -56.38 16 22 Si 1.00 43.74 29.55 68.60 2.03 45.77 16 23 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 24 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 25 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 26 C 0.11 2.58 4.13 86.36 0.36 2.93 16 27 H 0.07 1.13 6.78 -2.39 -0.02 1.11 16 28 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.12 0.74 7.04 -2.39 -0.02 0.73 16 30 H 0.20 3.19 8.06 -2.91 -0.02 3.17 16 31 H 0.18 4.02 8.06 -2.91 -0.02 4.00 16 32 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.11 0.90 7.06 -2.39 -0.02 0.88 16 34 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.05 0.88 8.14 -2.39 -0.02 0.87 16 38 H 0.08 1.63 5.93 -2.39 -0.01 1.62 16 39 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 40 H 0.10 3.92 7.68 -2.39 -0.02 3.90 16 41 H 0.11 4.04 7.95 -2.39 -0.02 4.02 16 42 H 0.27 15.61 8.31 -92.70 -0.77 14.84 16 43 H 0.10 1.49 7.86 -2.38 -0.02 1.47 16 44 H 0.06 1.71 4.97 -2.39 -0.01 1.70 16 Total: -1.00 -87.82 365.22 3.55 -84.27 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: 0.99 Total: 18.26 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: 7.53 Total: -5.70 kcal Atomic # 7 Polarization: -98.81 SS G_CDS: -5.79 Total: -104.60 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -0.05 Total: -27.97 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: -8.86 SS G_CDS: -1.16 Total: -10.02 kcal Total: -87.82 3.55 -84.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119166873.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.847 kcal (2) G-P(sol) polarization free energy of solvation -87.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds