Wall clock time and date at job start Tue Mar 31 2020 13:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36878 * 126.39829 * 2 1 4 4 C 1.34666 * 106.81597 * 180.23772 * 3 2 1 5 5 N 1.34129 * 108.02165 * 359.60606 * 4 3 2 6 6 C 1.30498 * 109.25671 * 0.40230 * 5 4 3 7 7 C 1.50696 * 125.65003 * 179.77584 * 6 5 4 8 8 C 1.53000 * 109.47082 * 269.97475 * 7 6 5 9 9 H 1.08993 * 109.49837 * 54.93244 * 8 7 6 10 10 C 1.53037 * 109.49929 * 175.00350 * 8 7 6 11 11 C 1.53044 * 109.53864 * 181.31697 * 10 8 7 12 12 C 1.53190 * 109.30968 * 298.63139 * 11 10 8 13 13 N 1.46917 * 108.77663 * 54.63707 * 12 11 10 14 14 C 1.34781 * 120.63334 * 126.41224 * 13 12 11 15 15 O 1.21279 * 120.00329 * 179.97438 * 14 13 12 16 16 C 1.50706 * 119.99676 * 359.97438 * 14 13 12 17 17 S 1.80997 * 109.46881 * 180.02562 * 16 14 13 18 18 C 1.76200 * 100.00031 * 180.02562 * 17 16 14 19 19 H 1.08006 * 119.99572 * 0.02562 * 18 17 16 20 20 C 1.38797 * 120.00137 * 179.97438 * 18 17 16 21 21 N 1.31626 * 120.00104 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99757 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47279 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47140 * 120.00078 * 22 20 18 25 25 H 1.48494 * 109.47177 * 239.99798 * 22 20 18 26 26 C 1.46929 * 118.74148 * 306.38912 * 13 12 11 27 27 H 1.09003 * 109.46811 * 90.03237 * 1 2 3 28 28 H 1.09001 * 109.46881 * 210.02672 * 1 2 3 29 29 H 1.08992 * 109.46991 * 330.03263 * 1 2 3 30 30 H 1.08002 * 126.58785 * 359.96564 * 3 2 1 31 31 H 1.08003 * 125.98708 * 179.75770 * 4 3 2 32 32 H 1.08996 * 109.47237 * 29.97295 * 7 6 5 33 33 H 1.09004 * 109.47461 * 149.97686 * 7 6 5 34 34 H 1.09000 * 109.45990 * 301.33359 * 10 8 7 35 35 H 1.09002 * 109.46513 * 61.29338 * 10 8 7 36 36 H 1.09000 * 109.49966 * 58.58539 * 11 10 8 37 37 H 1.09005 * 109.49670 * 178.67901 * 11 10 8 38 38 H 1.09008 * 109.58332 * 174.42455 * 12 11 10 39 39 H 1.09000 * 109.58715 * 294.84499 * 12 11 10 40 40 H 1.08998 * 109.47225 * 300.00376 * 16 14 13 41 41 H 1.09004 * 109.46694 * 60.00037 * 16 14 13 42 42 H 0.96998 * 119.99594 * 180.02562 * 21 20 18 43 43 H 1.09001 * 109.58167 * 293.82535 * 26 13 12 44 44 H 1.08998 * 109.58999 * 173.39923 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5461 0.6504 -0.0053 5 7 3.5096 -0.6904 0.0002 6 6 2.2663 -1.0871 0.0002 7 6 1.8019 -2.5207 0.0008 8 6 1.6443 -3.0063 -1.4415 9 1 2.5783 -2.8516 -1.9815 10 6 1.2937 -4.4960 -1.4435 11 6 1.1682 -4.9904 -2.8864 12 6 0.0397 -4.2272 -3.5870 13 7 0.2957 -2.7858 -3.4631 14 6 0.3226 -1.9967 -4.5555 15 8 0.5345 -0.8082 -4.4400 16 6 0.0894 -2.5914 -5.9205 17 16 0.1886 -1.2872 -7.1716 18 6 -0.1137 -2.2348 -8.6260 19 1 -0.2872 -3.2982 -8.5512 20 6 -0.1301 -1.6145 -9.8675 21 7 0.0808 -0.3185 -9.9586 22 14 -0.4499 -2.6194 -11.4094 23 1 -0.6547 -4.0428 -11.0391 24 1 -1.6651 -2.1062 -12.0915 25 1 0.7150 -2.5078 -12.3235 26 6 0.5212 -2.2206 -2.1258 27 1 -0.3633 -0.0006 -1.0277 28 1 -0.3633 -0.8898 0.5143 29 1 -0.3633 0.8902 0.5133 30 1 1.9613 2.1345 -0.0005 31 1 4.4369 1.2611 -0.0105 32 1 2.5366 -3.1404 0.5146 33 1 0.8433 -2.5919 0.5149 34 1 2.0797 -5.0547 -0.9354 35 1 0.3473 -4.6471 -0.9242 36 1 2.1065 -4.8170 -3.4134 37 1 0.9416 -6.0566 -2.8873 38 1 0.0109 -4.5040 -4.6410 39 1 -0.9130 -4.4709 -3.1169 40 1 0.8490 -3.3466 -6.1223 41 1 -0.8981 -3.0517 -5.9523 42 1 0.0690 0.1150 -10.8262 43 1 -0.3923 -2.3008 -1.5365 44 1 0.8100 -1.1734 -2.2155 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119166963.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:32 Heat of formation + Delta-G solvation = 17.870685 kcal Electronic energy + Delta-G solvation = -25263.697442 eV Core-core repulsion = 21728.997651 eV Total energy + Delta-G solvation = -3534.699792 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.21843 -39.96893 -37.50623 -34.43918 -34.02726 -32.43939 -32.13718 -30.28355 -28.98787 -27.38718 -26.18194 -25.58795 -25.01918 -22.73217 -21.45200 -20.80104 -19.63258 -19.09198 -17.70167 -17.17117 -16.81340 -15.88910 -15.85379 -15.25424 -14.89851 -14.81198 -14.65822 -14.25698 -14.00994 -13.93401 -13.64669 -13.34970 -13.22691 -12.96372 -12.83628 -12.73721 -12.60974 -12.54195 -11.96123 -11.90212 -11.29740 -11.08066 -11.03328 -11.00718 -10.94424 -10.76826 -10.64670 -10.03138 -9.79988 -9.66738 -9.36948 -9.08170 -8.54354 -8.40934 -8.22728 -6.50918 -6.22409 -3.93027 1.96232 2.67100 2.91112 3.03949 3.09816 3.20934 3.25588 3.30546 3.58731 4.16025 4.19353 4.47482 4.49112 4.56470 4.63253 4.75665 4.82850 4.88840 5.02007 5.06171 5.08647 5.12876 5.20727 5.22881 5.35868 5.40953 5.46688 5.47184 5.56522 5.62279 5.67442 5.72637 5.82008 5.86786 5.92749 5.97309 6.10362 6.17171 6.21052 6.61750 6.70097 7.07744 7.54356 7.59195 8.04994 8.34585 8.54684 9.22987 10.85095 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017533 B = 0.003037 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.595151 B = 9218.084409 C =10228.482539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.455 5.455 3 C -0.056 4.056 4 C -0.029 4.029 5 N -0.489 5.489 6 C 0.206 3.794 7 C -0.025 4.025 8 C -0.099 4.099 9 H 0.085 0.915 10 C -0.111 4.111 11 C -0.136 4.136 12 C 0.107 3.893 13 N -0.619 5.619 14 C 0.535 3.465 15 O -0.517 6.517 16 C -0.150 4.150 17 S -0.062 6.062 18 C -0.534 4.534 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.116 3.884 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.173 0.827 31 H 0.169 0.831 32 H 0.098 0.902 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.066 0.934 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.268 0.732 43 H 0.059 0.941 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.807 -6.800 23.173 24.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.138 5.138 3 C -0.188 4.188 4 C -0.177 4.177 5 N -0.208 5.208 6 C -0.056 4.056 7 C -0.065 4.065 8 C -0.120 4.120 9 H 0.103 0.897 10 C -0.149 4.149 11 C -0.174 4.174 12 C -0.017 4.017 13 N -0.355 5.355 14 C 0.323 3.677 15 O -0.392 6.392 16 C -0.300 4.300 17 S 0.165 5.835 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.205 1.205 26 C -0.007 4.007 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.191 0.809 31 H 0.186 0.814 32 H 0.117 0.883 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.108 0.892 39 H 0.085 0.915 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.037 -5.364 23.216 23.828 hybrid contribution -1.170 -1.300 -1.192 2.117 sum -1.133 -6.664 22.024 23.038 Atomic orbital electron populations 1.22205 0.76876 1.04398 1.04344 1.45244 1.07466 1.06678 1.54417 1.22701 0.91368 0.92578 1.12187 1.22264 0.96438 0.91156 1.07826 1.70208 1.18470 1.12106 1.20027 1.23143 0.85906 0.90779 1.05797 1.20014 1.01800 0.87281 0.97376 1.21583 1.00253 0.95444 0.94691 0.89692 1.21547 1.01890 0.94527 0.96929 1.21929 0.99764 0.99734 0.96011 1.21741 0.97777 0.79846 1.02309 1.48081 1.72936 1.08392 1.06129 1.20362 0.75482 0.86480 0.85405 1.90687 1.47203 1.15312 1.85968 1.23548 1.04438 1.05871 0.96162 1.85416 1.93581 1.08562 0.95964 1.22897 1.56393 0.96521 0.92457 0.90897 1.24992 0.94654 0.95194 0.98741 1.70028 1.46194 1.08816 1.25220 0.86116 0.78066 0.79767 0.81544 1.19602 1.20574 1.20542 1.21716 0.96842 0.99224 0.82948 0.89729 0.89569 0.89553 0.80944 0.81419 0.88341 0.90372 0.91252 0.91654 0.91125 0.90496 0.89167 0.91532 0.89258 0.89293 0.92238 0.92269 0.89143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.48 9.50 59.85 0.57 1.04 16 2 N -0.46 -4.94 2.83 -121.28 -0.34 -5.28 16 3 C -0.06 -0.62 11.58 -16.56 -0.19 -0.81 16 4 C -0.03 -0.37 11.87 -17.81 -0.21 -0.58 16 5 N -0.49 -7.10 11.25 -10.82 -0.12 -7.22 16 6 C 0.21 2.49 6.41 -155.42 -1.00 1.49 16 7 C -0.03 -0.22 5.00 -27.88 -0.14 -0.36 16 8 C -0.10 -1.01 2.33 -90.50 -0.21 -1.22 16 9 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 10 C -0.11 -0.86 5.17 -26.69 -0.14 -1.00 16 11 C -0.14 -1.19 6.08 -26.61 -0.16 -1.35 16 12 C 0.11 1.13 6.34 -3.72 -0.02 1.11 16 13 N -0.62 -8.84 2.97 -172.76 -0.51 -9.35 16 14 C 0.53 10.36 7.72 -10.98 -0.08 10.27 16 15 O -0.52 -12.06 15.27 5.56 0.08 -11.98 16 16 C -0.15 -3.08 4.50 36.01 0.16 -2.91 16 17 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 18 C -0.53 -15.26 9.50 30.94 0.29 -14.97 16 19 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.25 13.22 55.49 0.73 -25.51 16 22 Si 0.92 21.41 29.55 -169.99 -5.02 16.39 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 26 C 0.12 1.40 4.11 -3.71 -0.02 1.39 16 27 H 0.08 0.74 6.75 -51.93 -0.35 0.39 16 28 H 0.09 0.45 7.05 -51.93 -0.37 0.08 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.17 1.42 8.06 -52.49 -0.42 1.00 16 31 H 0.17 1.76 8.06 -52.48 -0.42 1.33 16 32 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 0.49 7.07 -51.93 -0.37 0.13 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.09 1.00 5.93 -51.92 -0.31 0.70 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.09 1.71 7.69 -51.92 -0.40 1.31 16 41 H 0.09 1.68 7.94 -51.91 -0.41 1.26 16 42 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 43 H 0.06 0.57 7.86 -51.93 -0.41 0.16 16 44 H 0.09 1.37 4.93 -51.93 -0.26 1.11 16 LS Contribution 365.16 15.07 5.50 5.50 Total: -1.00 -37.28 365.16 -9.77 -47.06 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -6.64 Total: 0.19 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -1.24 Total: -5.89 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: -0.24 Total: -47.36 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.08 Total: -11.98 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -37.28 -9.77 -47.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119166963.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.927 kcal (2) G-P(sol) polarization free energy of solvation -37.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds