Wall clock time and date at job start Tue Mar 31 2020 13:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36878 * 126.39829 * 2 1 4 4 C 1.34666 * 106.81597 * 180.23772 * 3 2 1 5 5 N 1.34129 * 108.02165 * 359.60606 * 4 3 2 6 6 C 1.30498 * 109.25671 * 0.40230 * 5 4 3 7 7 C 1.50696 * 125.65003 * 179.77584 * 6 5 4 8 8 C 1.53000 * 109.47082 * 269.97475 * 7 6 5 9 9 H 1.08993 * 109.49837 * 54.93244 * 8 7 6 10 10 C 1.53037 * 109.49929 * 175.00350 * 8 7 6 11 11 C 1.53044 * 109.53864 * 181.31697 * 10 8 7 12 12 C 1.53190 * 109.30968 * 298.63139 * 11 10 8 13 13 N 1.46917 * 108.77663 * 54.63707 * 12 11 10 14 14 C 1.34781 * 120.63334 * 126.41224 * 13 12 11 15 15 O 1.21279 * 120.00329 * 179.97438 * 14 13 12 16 16 C 1.50706 * 119.99676 * 359.97438 * 14 13 12 17 17 S 1.80997 * 109.46881 * 180.02562 * 16 14 13 18 18 C 1.76200 * 100.00031 * 180.02562 * 17 16 14 19 19 H 1.08006 * 119.99572 * 0.02562 * 18 17 16 20 20 C 1.38797 * 120.00137 * 179.97438 * 18 17 16 21 21 N 1.31626 * 120.00104 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99757 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47279 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47140 * 120.00078 * 22 20 18 25 25 H 1.48494 * 109.47177 * 239.99798 * 22 20 18 26 26 C 1.46929 * 118.74148 * 306.38912 * 13 12 11 27 27 H 1.09003 * 109.46811 * 90.03237 * 1 2 3 28 28 H 1.09001 * 109.46881 * 210.02672 * 1 2 3 29 29 H 1.08992 * 109.46991 * 330.03263 * 1 2 3 30 30 H 1.08002 * 126.58785 * 359.96564 * 3 2 1 31 31 H 1.08003 * 125.98708 * 179.75770 * 4 3 2 32 32 H 1.08996 * 109.47237 * 29.97295 * 7 6 5 33 33 H 1.09004 * 109.47461 * 149.97686 * 7 6 5 34 34 H 1.09000 * 109.45990 * 301.33359 * 10 8 7 35 35 H 1.09002 * 109.46513 * 61.29338 * 10 8 7 36 36 H 1.09000 * 109.49966 * 58.58539 * 11 10 8 37 37 H 1.09005 * 109.49670 * 178.67901 * 11 10 8 38 38 H 1.09008 * 109.58332 * 174.42455 * 12 11 10 39 39 H 1.09000 * 109.58715 * 294.84499 * 12 11 10 40 40 H 1.08998 * 109.47225 * 300.00376 * 16 14 13 41 41 H 1.09004 * 109.46694 * 60.00037 * 16 14 13 42 42 H 0.96998 * 119.99594 * 180.02562 * 21 20 18 43 43 H 1.09001 * 109.58167 * 293.82535 * 26 13 12 44 44 H 1.08998 * 109.58999 * 173.39923 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5461 0.6504 -0.0053 5 7 3.5096 -0.6904 0.0002 6 6 2.2663 -1.0871 0.0002 7 6 1.8019 -2.5207 0.0008 8 6 1.6443 -3.0063 -1.4415 9 1 2.5783 -2.8516 -1.9815 10 6 1.2937 -4.4960 -1.4435 11 6 1.1682 -4.9904 -2.8864 12 6 0.0397 -4.2272 -3.5870 13 7 0.2957 -2.7858 -3.4631 14 6 0.3226 -1.9967 -4.5555 15 8 0.5345 -0.8082 -4.4400 16 6 0.0894 -2.5914 -5.9205 17 16 0.1886 -1.2872 -7.1716 18 6 -0.1137 -2.2348 -8.6260 19 1 -0.2872 -3.2982 -8.5512 20 6 -0.1301 -1.6145 -9.8675 21 7 0.0808 -0.3185 -9.9586 22 14 -0.4499 -2.6194 -11.4094 23 1 -0.6547 -4.0428 -11.0391 24 1 -1.6651 -2.1062 -12.0915 25 1 0.7150 -2.5078 -12.3235 26 6 0.5212 -2.2206 -2.1258 27 1 -0.3633 -0.0006 -1.0277 28 1 -0.3633 -0.8898 0.5143 29 1 -0.3633 0.8902 0.5133 30 1 1.9613 2.1345 -0.0005 31 1 4.4369 1.2611 -0.0105 32 1 2.5366 -3.1404 0.5146 33 1 0.8433 -2.5919 0.5149 34 1 2.0797 -5.0547 -0.9354 35 1 0.3473 -4.6471 -0.9242 36 1 2.1065 -4.8170 -3.4134 37 1 0.9416 -6.0566 -2.8873 38 1 0.0109 -4.5040 -4.6410 39 1 -0.9130 -4.4709 -3.1169 40 1 0.8490 -3.3466 -6.1223 41 1 -0.8981 -3.0517 -5.9523 42 1 0.0690 0.1150 -10.8262 43 1 -0.3923 -2.3008 -1.5365 44 1 0.8100 -1.1734 -2.2155 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119166963.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:31 Heat of formation + Delta-G solvation = -6.382389 kcal Electronic energy + Delta-G solvation = -25264.749134 eV Core-core repulsion = 21728.997651 eV Total energy + Delta-G solvation = -3535.751484 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.06868 -41.18843 -38.69458 -35.42158 -34.87280 -34.60612 -33.02974 -31.51417 -30.16953 -28.15882 -27.71386 -26.95528 -26.13407 -23.57963 -22.32066 -21.79487 -20.53428 -20.31156 -19.50658 -18.25150 -17.95255 -17.08277 -16.89696 -16.79001 -16.54761 -15.99119 -15.64199 -15.42412 -15.09750 -14.96243 -14.59797 -14.51431 -14.31108 -14.27971 -13.76918 -13.65864 -13.47264 -13.42872 -13.27346 -13.17519 -12.92728 -12.82867 -12.54739 -12.03820 -11.82807 -11.76017 -11.68683 -11.44649 -11.17667 -10.96566 -10.89266 -10.53016 -10.28549 -9.68118 -9.30309 -8.70420 -8.36539 -6.15557 1.10843 1.23703 1.40566 1.44404 1.53201 1.56538 1.94269 2.08272 2.16976 2.25480 2.97817 3.22866 3.40852 3.65534 3.73454 3.81054 3.93013 3.96265 4.06489 4.10195 4.21480 4.26028 4.32558 4.33502 4.40412 4.44616 4.54865 4.60816 4.66536 4.73169 4.76620 4.82840 4.89625 4.98391 5.09177 5.16062 5.26851 5.36041 5.39868 5.47639 5.55941 5.83257 6.17990 6.26503 6.29673 7.04597 7.11154 7.15942 8.73099 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017533 B = 0.003037 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.595151 B = 9218.084409 C =10228.482539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.457 5.457 3 C -0.059 4.059 4 C -0.062 4.062 5 N -0.534 5.534 6 C 0.195 3.805 7 C -0.020 4.020 8 C -0.089 4.089 9 H 0.043 0.957 10 C -0.105 4.105 11 C -0.133 4.133 12 C 0.096 3.904 13 N -0.606 5.606 14 C 0.529 3.471 15 O -0.570 6.570 16 C -0.121 4.121 17 S -0.156 6.156 18 C -0.545 4.545 19 H 0.083 0.917 20 C 0.013 3.987 21 N -0.912 5.912 22 Si 1.001 2.999 23 H -0.255 1.255 24 H -0.273 1.273 25 H -0.275 1.275 26 C 0.114 3.886 27 H 0.068 0.932 28 H 0.115 0.885 29 H 0.106 0.894 30 H 0.198 0.802 31 H 0.177 0.823 32 H 0.107 0.893 33 H 0.115 0.885 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.046 0.954 37 H 0.108 0.892 38 H 0.083 0.917 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.110 0.890 42 H 0.271 0.729 43 H 0.096 0.904 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.764 -10.096 24.618 26.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.139 5.139 3 C -0.192 4.192 4 C -0.209 4.209 5 N -0.254 5.254 6 C -0.067 4.067 7 C -0.059 4.059 8 C -0.110 4.110 9 H 0.062 0.938 10 C -0.142 4.142 11 C -0.171 4.171 12 C -0.026 4.026 13 N -0.340 5.340 14 C 0.317 3.683 15 O -0.449 6.449 16 C -0.272 4.272 17 S 0.072 5.928 18 C -0.692 4.692 19 H 0.101 0.899 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.822 3.178 23 H -0.179 1.179 24 H -0.198 1.198 25 H -0.200 1.200 26 C -0.008 4.008 27 H 0.087 0.913 28 H 0.134 0.866 29 H 0.125 0.875 30 H 0.215 0.785 31 H 0.194 0.806 32 H 0.125 0.875 33 H 0.133 0.867 34 H 0.103 0.897 35 H 0.114 0.886 36 H 0.065 0.935 37 H 0.126 0.874 38 H 0.102 0.898 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.128 0.872 42 H 0.080 0.920 43 H 0.114 0.886 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.935 -8.713 24.709 26.272 hybrid contribution -0.551 -0.299 -1.520 1.644 sum -2.486 -9.011 23.189 25.002 Atomic orbital electron populations 1.22455 0.74798 1.06983 1.04025 1.45486 1.08775 1.06170 1.53510 1.23146 0.91128 0.93919 1.11026 1.22619 0.97812 0.91226 1.09236 1.70146 1.20450 1.13049 1.21764 1.23760 0.85636 0.92377 1.04952 1.20151 1.03830 0.85289 0.96636 1.21460 0.97418 0.97355 0.94762 0.93844 1.21566 1.04004 0.92062 0.96597 1.21937 0.97762 1.01227 0.96168 1.22134 1.00253 0.77339 1.02853 1.48121 1.70610 1.09685 1.05582 1.20184 0.75737 0.86171 0.86199 1.90669 1.50084 1.17500 1.86643 1.23353 1.06040 1.03162 0.94693 1.85617 1.94008 1.13805 0.99407 1.23220 1.56406 0.96879 0.92731 0.89856 1.26154 0.93983 0.96394 1.02639 1.70196 1.47363 1.10992 1.26296 0.84882 0.78044 0.78516 0.76356 1.17852 1.19803 1.20009 1.21919 0.99176 0.97649 0.82099 0.91323 0.86646 0.87514 0.78518 0.80619 0.87457 0.86723 0.89695 0.88591 0.93479 0.87401 0.89836 0.88173 0.87913 0.87184 0.91988 0.88565 0.92594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.75 9.50 127.77 1.21 1.96 16 2 N -0.46 -9.60 2.83 -537.61 -1.52 -11.12 16 3 C -0.06 -1.33 11.58 83.09 0.96 -0.37 16 4 C -0.06 -1.66 11.87 83.52 0.99 -0.67 16 5 N -0.53 -16.06 11.25 -188.13 -2.12 -18.18 16 6 C 0.20 4.63 6.41 138.13 0.88 5.52 16 7 C -0.02 -0.30 5.00 29.85 0.15 -0.15 16 8 C -0.09 -1.65 2.33 -10.72 -0.02 -1.67 16 9 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 10 C -0.10 -1.18 5.17 30.62 0.16 -1.02 16 11 C -0.13 -1.85 6.08 30.67 0.19 -1.67 16 12 C 0.10 1.72 6.34 86.36 0.55 2.27 16 13 N -0.61 -16.46 2.97 -818.89 -2.43 -18.90 16 14 C 0.53 20.80 7.72 87.66 0.68 21.47 16 15 O -0.57 -27.89 15.27 -3.02 -0.05 -27.94 16 16 C -0.12 -5.01 4.50 71.24 0.32 -4.69 16 17 S -0.16 -8.87 20.57 -56.49 -1.16 -10.03 16 18 C -0.54 -31.44 9.50 67.95 0.65 -30.79 16 19 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 20 C 0.01 0.74 5.49 84.86 0.47 1.21 16 21 N -0.91 -56.62 13.22 21.65 0.29 -56.33 16 22 Si 1.00 43.77 29.55 68.60 2.03 45.80 16 23 H -0.25 -10.35 7.11 99.48 0.71 -9.64 16 24 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 25 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 26 C 0.11 2.57 4.11 86.36 0.36 2.92 16 27 H 0.07 1.14 6.75 -2.39 -0.02 1.12 16 28 H 0.12 0.75 7.05 -2.39 -0.02 0.73 16 29 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.20 3.18 8.06 -2.91 -0.02 3.16 16 31 H 0.18 4.02 8.06 -2.91 -0.02 4.00 16 32 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.11 0.90 7.07 -2.38 -0.02 0.88 16 34 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.11 0.92 8.14 -2.38 -0.02 0.90 16 38 H 0.08 1.63 5.93 -2.38 -0.01 1.62 16 39 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.10 3.92 7.69 -2.40 -0.02 3.90 16 41 H 0.11 4.03 7.94 -2.39 -0.02 4.01 16 42 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 43 H 0.10 1.49 7.86 -2.39 -0.02 1.47 16 44 H 0.06 1.71 4.93 -2.39 -0.01 1.70 16 Total: -1.00 -87.77 365.16 3.56 -84.21 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: 0.99 Total: 18.16 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: 7.53 Total: -5.68 kcal Atomic # 7 Polarization: -98.75 SS G_CDS: -5.78 Total: -104.53 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -0.05 Total: -27.94 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: -8.87 SS G_CDS: -1.16 Total: -10.03 kcal Total: -87.77 3.56 -84.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119166963.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.830 kcal (2) G-P(sol) polarization free energy of solvation -87.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds