Wall clock time and date at job start Tue Mar 31 2020 14:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34230 * 116.99968 * 2 1 4 4 O 1.20819 * 120.00264 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99670 * 179.97438 * 3 2 1 6 6 N 1.46504 * 109.47154 * 179.97438 * 5 3 2 7 7 C 1.36906 * 119.99998 * 96.45219 * 6 5 3 8 8 H 1.08004 * 120.00383 * 146.44781 * 7 6 5 9 9 C 1.39020 * 120.00107 * 326.17069 * 7 6 5 10 10 N 1.31388 * 120.00035 * 5.20269 * 9 7 6 11 11 Si 1.86801 * 120.00216 * 185.19725 * 9 7 6 12 12 H 1.48505 * 109.47087 * 60.00463 * 11 9 7 13 13 H 1.48501 * 109.47137 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47162 * 300.00580 * 11 9 7 15 15 C 1.34774 * 119.99963 * 276.45737 * 6 5 3 16 16 O 1.21605 * 120.00041 * 354.43205 * 15 6 5 17 17 C 1.47606 * 119.99960 * 174.43401 * 15 6 5 18 18 C 1.41551 * 126.52269 * 184.46053 * 17 15 6 19 19 C 1.35351 * 105.50164 * 179.97438 * 18 17 15 20 20 C 1.50696 * 126.38018 * 179.97438 * 19 18 17 21 21 N 1.35051 * 107.23918 * 359.97438 * 19 18 17 22 22 C 1.46501 * 124.87466 * 179.97438 * 21 19 18 23 23 C 1.52997 * 109.47203 * 53.30939 * 22 21 19 24 24 C 1.53000 * 109.46901 * 173.30498 * 22 21 19 25 25 C 1.52992 * 109.47346 * 293.30551 * 22 21 19 26 26 N 1.28462 * 110.24444 * 359.73059 * 21 19 18 27 27 H 1.09004 * 109.46736 * 59.99962 * 1 2 3 28 28 H 1.09000 * 109.47672 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47178 * 300.00516 * 1 2 3 30 30 H 1.09003 * 109.47240 * 59.99888 * 5 3 2 31 31 H 1.08993 * 109.47429 * 299.99813 * 5 3 2 32 32 H 0.96996 * 119.99717 * 180.02562 * 10 9 7 33 33 H 1.08003 * 127.24984 * 359.97174 * 18 17 15 34 34 H 1.08990 * 109.47637 * 95.14301 * 20 19 18 35 35 H 1.08998 * 109.47023 * 215.14957 * 20 19 18 36 36 H 1.09007 * 109.46638 * 335.14475 * 20 19 18 37 37 H 1.08999 * 109.47392 * 59.99693 * 23 22 21 38 38 H 1.09004 * 109.47363 * 179.97438 * 23 22 21 39 39 H 1.09004 * 109.47244 * 299.99276 * 23 22 21 40 40 H 1.09002 * 109.47220 * 59.99772 * 24 22 21 41 41 H 1.09005 * 109.47313 * 179.97438 * 24 22 21 42 42 H 1.09005 * 109.47562 * 300.00218 * 24 22 21 43 43 H 1.09002 * 109.47648 * 67.75808 * 25 22 21 44 44 H 1.09008 * 109.47186 * 187.76206 * 25 22 21 45 45 H 1.09007 * 109.47090 * 307.75856 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9818 2.6797 -0.0002 7 6 4.3032 3.2991 1.1777 8 1 5.0721 4.0572 1.1969 9 6 3.6357 2.9563 2.3480 10 7 2.7696 1.9683 2.3451 11 14 3.9702 3.9004 3.9249 12 1 3.6322 5.3326 3.7255 13 1 3.1383 3.3430 5.0215 14 1 5.4064 3.7757 4.2812 15 6 4.0475 3.3624 -1.1604 16 8 3.8608 2.7875 -2.2155 17 6 4.3461 4.8079 -1.1502 18 6 4.3615 5.6728 -2.2706 19 6 4.6827 6.8931 -1.7812 20 6 4.8292 8.1648 -2.5763 21 7 4.8476 6.7588 -0.4475 22 6 5.2035 7.8470 0.4664 23 6 4.2234 9.0075 0.2837 24 6 5.1348 7.3439 1.9097 25 6 6.6239 8.3261 0.1603 26 7 4.6424 5.5407 -0.0948 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 3.9564 0.7805 -0.8892 31 1 3.9557 0.7809 0.8908 32 1 2.3037 1.7294 3.1616 33 1 4.1594 5.4135 -3.2994 34 1 3.8924 8.7213 -2.5476 35 1 5.6259 8.7722 -2.1468 36 1 5.0753 7.9208 -3.6098 37 1 3.2114 8.6663 0.5018 38 1 4.4879 9.8171 0.9640 39 1 4.2723 9.3661 -0.7445 40 1 5.8331 6.5171 2.0398 41 1 5.4001 8.1535 2.5897 42 1 4.1229 7.0026 2.1278 43 1 6.6417 8.8098 -0.8163 44 1 6.9400 9.0371 0.9238 45 1 7.3020 7.4727 0.1555 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120581324.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:26 Heat of formation + Delta-G solvation = -20.291225 kcal Electronic energy + Delta-G solvation = -29426.950487 eV Core-core repulsion = 25447.842999 eV Total energy + Delta-G solvation = -3979.107487 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.07271 -39.27603 -38.01067 -36.53774 -35.25896 -34.43615 -32.41196 -31.42181 -30.21413 -28.35909 -27.53763 -27.21426 -26.66129 -26.06631 -24.79196 -22.71241 -20.93579 -20.01696 -19.29656 -18.49425 -17.18603 -16.44594 -16.12091 -15.64956 -15.57887 -15.28404 -15.05773 -14.45196 -14.27549 -14.12333 -14.05978 -13.42033 -13.34947 -12.99499 -12.75811 -12.59063 -12.39254 -12.31255 -12.25768 -12.10599 -12.07641 -11.72930 -11.66709 -11.37882 -11.19854 -11.17162 -11.03487 -10.93273 -10.79405 -10.49306 -10.36583 -9.72786 -9.63875 -9.19967 -8.85967 -8.70191 -8.27691 -8.20032 -7.67110 -6.36978 -3.92446 2.53020 2.84295 2.97083 3.20444 3.24488 3.26528 3.76018 3.85803 4.20245 4.51401 4.61380 4.75256 4.79288 4.86279 5.01402 5.14996 5.21375 5.37920 5.44685 5.52924 5.58931 5.65893 5.72148 5.76918 5.78200 5.84375 5.85722 5.88413 6.03537 6.09426 6.15915 6.24762 6.33029 6.42824 6.49110 6.55511 6.61643 6.80226 7.23562 7.46122 7.59141 7.67206 7.82286 8.52902 8.82154 9.15153 9.25926 9.50927 9.88698 10.72440 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013959 B = 0.005323 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.414368 B = 5259.189141 C = 6604.621601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.376 6.376 3 C 0.488 3.512 4 O -0.502 6.502 5 C 0.159 3.841 6 N -0.417 5.417 7 C -0.307 4.307 8 H 0.121 0.879 9 C 0.042 3.958 10 N -0.881 5.881 11 Si 0.926 3.074 12 H -0.269 1.269 13 H -0.288 1.288 14 H -0.274 1.274 15 C 0.550 3.450 16 O -0.599 6.599 17 C 0.021 3.979 18 C -0.191 4.191 19 C -0.010 4.010 20 C -0.082 4.082 21 N -0.290 5.290 22 C 0.173 3.827 23 C -0.166 4.166 24 C -0.148 4.148 25 C -0.161 4.161 26 N -0.224 5.224 27 H 0.049 0.951 28 H 0.084 0.916 29 H 0.053 0.947 30 H 0.079 0.921 31 H 0.124 0.876 32 H 0.271 0.729 33 H 0.149 0.851 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.076 0.924 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.112 10.186 -1.663 11.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.294 6.294 3 C 0.330 3.670 4 O -0.386 6.386 5 C 0.034 3.966 6 N -0.135 5.135 7 C -0.436 4.436 8 H 0.138 0.862 9 C -0.162 4.162 10 N -0.520 5.520 11 Si 0.753 3.247 12 H -0.195 1.195 13 H -0.214 1.214 14 H -0.199 1.199 15 C 0.339 3.661 16 O -0.483 6.483 17 C -0.140 4.140 18 C -0.220 4.220 19 C -0.133 4.133 20 C -0.140 4.140 21 N -0.079 5.079 22 C 0.090 3.910 23 C -0.224 4.224 24 C -0.205 4.205 25 C -0.219 4.219 26 N -0.056 5.056 27 H 0.067 0.933 28 H 0.103 0.897 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.142 0.858 32 H 0.081 0.919 33 H 0.167 0.833 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.085 0.915 44 H 0.095 0.905 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.849 10.143 -0.775 10.877 hybrid contribution -0.575 0.534 0.257 0.826 sum 3.273 10.678 -0.518 11.180 Atomic orbital electron populations 1.22899 0.78946 1.01635 1.01517 1.86451 1.21475 1.35618 1.85850 1.23837 0.92238 0.80483 0.70483 1.90510 1.66476 1.36362 1.45278 1.20462 0.87161 0.85607 1.03419 1.43148 1.56282 1.07705 1.06368 1.20065 1.19132 1.20742 0.83700 0.86225 1.25417 0.94511 0.96174 1.00139 1.69545 1.26221 1.27241 1.29020 0.86030 0.78073 0.80248 0.80319 1.19453 1.21395 1.19911 1.17053 0.81363 0.83720 0.83949 1.90615 1.57316 1.68954 1.31459 1.21855 1.07156 0.95326 0.89613 1.21399 1.09612 0.91045 0.99931 1.21085 1.09202 0.97610 0.85406 1.20453 1.01898 0.92539 0.99086 1.45980 1.49648 1.07272 1.05018 1.20768 0.95285 0.84610 0.90301 1.22377 0.99631 0.97015 1.03402 1.21992 1.04963 1.01697 0.91849 1.22319 0.94722 1.02261 1.02606 1.74270 1.16728 0.89374 1.25250 0.93255 0.89718 0.92778 0.90262 0.85807 0.91851 0.83316 0.91208 0.91351 0.90432 0.91488 0.90507 0.90991 0.90722 0.91428 0.90752 0.91474 0.90524 0.91383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.82 10.56 101.05 1.07 1.89 16 2 O -0.38 -8.49 10.57 -39.26 -0.41 -8.90 16 3 C 0.49 12.68 5.96 36.01 0.21 12.90 16 4 O -0.50 -14.62 15.41 -18.74 -0.29 -14.91 16 5 C 0.16 4.00 5.17 -5.19 -0.03 3.97 16 6 N -0.42 -11.21 2.16 -117.25 -0.25 -11.47 16 7 C -0.31 -8.13 8.17 -15.00 -0.12 -8.25 16 8 H 0.12 3.10 5.68 -52.48 -0.30 2.80 16 9 C 0.04 1.08 5.34 -17.45 -0.09 0.99 16 10 N -0.88 -23.68 8.59 55.50 0.48 -23.21 16 11 Si 0.93 20.44 29.56 -169.99 -5.02 15.42 16 12 H -0.27 -5.83 6.97 56.52 0.39 -5.44 16 13 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 14 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 15 C 0.55 14.89 7.39 -12.44 -0.09 14.80 16 16 O -0.60 -16.98 16.58 5.27 0.09 -16.89 16 17 C 0.02 0.50 6.86 -82.77 -0.57 -0.07 16 18 C -0.19 -3.91 10.73 -39.35 -0.42 -4.33 16 19 C -0.01 -0.17 6.42 -82.21 -0.53 -0.69 16 20 C -0.08 -0.92 8.43 36.00 0.30 -0.62 16 21 N -0.29 -5.18 3.18 -44.51 -0.14 -5.32 16 22 C 0.17 2.34 1.06 -131.82 -0.14 2.20 16 23 C -0.17 -1.83 8.36 37.16 0.31 -1.52 16 24 C -0.15 -2.16 7.91 37.16 0.29 -1.87 16 25 C -0.16 -1.71 8.49 37.15 0.32 -1.39 16 26 N -0.22 -4.99 7.63 33.42 0.26 -4.74 16 27 H 0.05 0.89 8.13 -51.93 -0.42 0.47 16 28 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 29 H 0.05 1.03 8.13 -51.93 -0.42 0.60 16 30 H 0.08 1.86 7.55 -51.93 -0.39 1.47 16 31 H 0.12 3.06 6.81 -51.93 -0.35 2.70 16 32 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 33 H 0.15 2.85 8.06 -52.48 -0.42 2.42 16 34 H 0.07 0.71 7.43 -51.93 -0.39 0.32 16 35 H 0.07 0.64 4.90 -51.93 -0.25 0.38 16 36 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.70 4.92 -51.93 -0.26 0.44 16 40 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.07 1.29 8.00 -51.93 -0.42 0.88 16 43 H 0.07 0.62 5.53 -51.93 -0.29 0.33 16 44 H 0.08 0.62 8.13 -51.92 -0.42 0.20 16 45 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 LS Contribution 364.23 15.07 5.49 5.49 Total: -1.00 -34.60 364.23 -5.73 -40.33 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -6.43 Total: 6.19 kcal Atomic # 6 Polarization: 17.50 SS G_CDS: 0.51 Total: 18.01 kcal Atomic # 7 Polarization: -45.07 SS G_CDS: 0.34 Total: -44.73 kcal Atomic # 8 Polarization: -40.09 SS G_CDS: -0.62 Total: -40.70 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.60 -5.73 -40.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120581324.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.038 kcal (2) G-P(sol) polarization free energy of solvation -34.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds