Wall clock time and date at job start Tue Mar 31 2020 14:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34230 * 116.99968 * 2 1 4 4 O 1.20819 * 120.00264 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99670 * 179.97438 * 3 2 1 6 6 N 1.46504 * 109.47154 * 179.97438 * 5 3 2 7 7 C 1.36906 * 119.99998 * 96.45219 * 6 5 3 8 8 H 1.08004 * 120.00383 * 146.44781 * 7 6 5 9 9 C 1.39020 * 120.00107 * 326.17069 * 7 6 5 10 10 N 1.31388 * 120.00035 * 5.20269 * 9 7 6 11 11 Si 1.86801 * 120.00216 * 185.19725 * 9 7 6 12 12 H 1.48505 * 109.47087 * 60.00463 * 11 9 7 13 13 H 1.48501 * 109.47137 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47162 * 300.00580 * 11 9 7 15 15 C 1.34774 * 119.99963 * 276.45737 * 6 5 3 16 16 O 1.21605 * 120.00041 * 354.43205 * 15 6 5 17 17 C 1.47606 * 119.99960 * 174.43401 * 15 6 5 18 18 C 1.41551 * 126.52269 * 184.46053 * 17 15 6 19 19 C 1.35351 * 105.50164 * 179.97438 * 18 17 15 20 20 C 1.50696 * 126.38018 * 179.97438 * 19 18 17 21 21 N 1.35051 * 107.23918 * 359.97438 * 19 18 17 22 22 C 1.46501 * 124.87466 * 179.97438 * 21 19 18 23 23 C 1.52997 * 109.47203 * 53.30939 * 22 21 19 24 24 C 1.53000 * 109.46901 * 173.30498 * 22 21 19 25 25 C 1.52992 * 109.47346 * 293.30551 * 22 21 19 26 26 N 1.28462 * 110.24444 * 359.73059 * 21 19 18 27 27 H 1.09004 * 109.46736 * 59.99962 * 1 2 3 28 28 H 1.09000 * 109.47672 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47178 * 300.00516 * 1 2 3 30 30 H 1.09003 * 109.47240 * 59.99888 * 5 3 2 31 31 H 1.08993 * 109.47429 * 299.99813 * 5 3 2 32 32 H 0.96996 * 119.99717 * 180.02562 * 10 9 7 33 33 H 1.08003 * 127.24984 * 359.97174 * 18 17 15 34 34 H 1.08990 * 109.47637 * 95.14301 * 20 19 18 35 35 H 1.08998 * 109.47023 * 215.14957 * 20 19 18 36 36 H 1.09007 * 109.46638 * 335.14475 * 20 19 18 37 37 H 1.08999 * 109.47392 * 59.99693 * 23 22 21 38 38 H 1.09004 * 109.47363 * 179.97438 * 23 22 21 39 39 H 1.09004 * 109.47244 * 299.99276 * 23 22 21 40 40 H 1.09002 * 109.47220 * 59.99772 * 24 22 21 41 41 H 1.09005 * 109.47313 * 179.97438 * 24 22 21 42 42 H 1.09005 * 109.47562 * 300.00218 * 24 22 21 43 43 H 1.09002 * 109.47648 * 67.75808 * 25 22 21 44 44 H 1.09008 * 109.47186 * 187.76206 * 25 22 21 45 45 H 1.09007 * 109.47090 * 307.75856 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9818 2.6797 -0.0002 7 6 4.3032 3.2991 1.1777 8 1 5.0721 4.0572 1.1969 9 6 3.6357 2.9563 2.3480 10 7 2.7696 1.9683 2.3451 11 14 3.9702 3.9004 3.9249 12 1 3.6322 5.3326 3.7255 13 1 3.1383 3.3430 5.0215 14 1 5.4064 3.7757 4.2812 15 6 4.0475 3.3624 -1.1604 16 8 3.8608 2.7875 -2.2155 17 6 4.3461 4.8079 -1.1502 18 6 4.3615 5.6728 -2.2706 19 6 4.6827 6.8931 -1.7812 20 6 4.8292 8.1648 -2.5763 21 7 4.8476 6.7588 -0.4475 22 6 5.2035 7.8470 0.4664 23 6 4.2234 9.0075 0.2837 24 6 5.1348 7.3439 1.9097 25 6 6.6239 8.3261 0.1603 26 7 4.6424 5.5407 -0.0948 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 3.9564 0.7805 -0.8892 31 1 3.9557 0.7809 0.8908 32 1 2.3037 1.7294 3.1616 33 1 4.1594 5.4135 -3.2994 34 1 3.8924 8.7213 -2.5476 35 1 5.6259 8.7722 -2.1468 36 1 5.0753 7.9208 -3.6098 37 1 3.2114 8.6663 0.5018 38 1 4.4879 9.8171 0.9640 39 1 4.2723 9.3661 -0.7445 40 1 5.8331 6.5171 2.0398 41 1 5.4001 8.1535 2.5897 42 1 4.1229 7.0026 2.1278 43 1 6.6417 8.8098 -0.8163 44 1 6.9400 9.0371 0.9238 45 1 7.3020 7.4727 0.1555 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120581324.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:25 Heat of formation + Delta-G solvation = -42.343830 kcal Electronic energy + Delta-G solvation = -29427.906759 eV Core-core repulsion = 25447.842999 eV Total energy + Delta-G solvation = -3980.063760 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.55176 -41.26883 -39.95330 -37.72935 -37.23664 -36.48957 -33.72405 -33.40686 -31.77577 -30.16099 -28.36610 -28.34014 -28.00848 -27.61065 -26.76671 -24.39307 -22.37281 -21.87635 -21.12165 -19.98250 -19.01442 -18.42649 -17.64122 -17.40453 -17.19380 -16.91179 -16.81597 -16.16718 -16.09293 -15.40056 -15.33636 -14.96890 -14.88947 -14.46580 -14.22940 -14.08656 -13.88563 -13.57615 -13.53960 -13.32035 -13.16602 -13.15591 -13.02613 -12.92441 -12.76748 -12.74325 -12.59069 -12.45842 -12.19140 -12.11732 -11.76694 -11.57229 -11.45796 -11.13239 -10.89558 -10.67346 -9.90048 -9.67025 -9.63673 -8.36758 -5.98198 0.85798 1.29976 1.38403 1.46619 1.51121 1.70123 1.77060 2.01366 2.33048 2.69309 2.89131 3.20401 3.45100 3.78570 3.85241 3.89991 4.04753 4.19802 4.27536 4.34465 4.40703 4.48746 4.57550 4.60038 4.63984 4.69143 4.70166 4.72949 4.76013 4.79750 4.83657 4.87656 4.92465 5.01708 5.17756 5.22783 5.29774 5.31988 5.49999 5.64460 5.68551 5.80068 6.21144 6.51504 7.05164 7.21020 7.29802 7.53000 7.85787 8.71802 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013959 B = 0.005323 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.414368 B = 5259.189141 C = 6604.621601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.375 6.375 3 C 0.492 3.508 4 O -0.541 6.541 5 C 0.155 3.845 6 N -0.428 5.428 7 C -0.319 4.319 8 H 0.120 0.880 9 C -0.001 4.001 10 N -0.902 5.902 11 Si 0.985 3.015 12 H -0.266 1.266 13 H -0.288 1.288 14 H -0.257 1.257 15 C 0.535 3.465 16 O -0.628 6.628 17 C -0.026 4.026 18 C -0.222 4.222 19 C 0.017 3.983 20 C -0.081 4.081 21 N -0.282 5.282 22 C 0.157 3.843 23 C -0.162 4.162 24 C -0.148 4.148 25 C -0.155 4.155 26 N -0.246 5.246 27 H 0.049 0.951 28 H 0.136 0.864 29 H 0.043 0.957 30 H 0.088 0.912 31 H 0.124 0.876 32 H 0.269 0.731 33 H 0.151 0.849 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.041 0.959 38 H 0.113 0.887 39 H 0.091 0.909 40 H 0.051 0.949 41 H 0.108 0.892 42 H 0.038 0.962 43 H 0.087 0.913 44 H 0.111 0.889 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.047 13.479 -1.167 14.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.292 6.292 3 C 0.335 3.665 4 O -0.429 6.429 5 C 0.030 3.970 6 N -0.145 5.145 7 C -0.448 4.448 8 H 0.138 0.862 9 C -0.202 4.202 10 N -0.542 5.542 11 Si 0.809 3.191 12 H -0.191 1.191 13 H -0.214 1.214 14 H -0.181 1.181 15 C 0.325 3.675 16 O -0.516 6.516 17 C -0.185 4.185 18 C -0.251 4.251 19 C -0.108 4.108 20 C -0.139 4.139 21 N -0.072 5.072 22 C 0.076 3.924 23 C -0.220 4.220 24 C -0.206 4.206 25 C -0.212 4.212 26 N -0.081 5.081 27 H 0.067 0.933 28 H 0.154 0.846 29 H 0.062 0.938 30 H 0.106 0.894 31 H 0.142 0.858 32 H 0.078 0.922 33 H 0.169 0.831 34 H 0.109 0.891 35 H 0.116 0.884 36 H 0.112 0.888 37 H 0.061 0.939 38 H 0.131 0.869 39 H 0.110 0.890 40 H 0.071 0.929 41 H 0.127 0.873 42 H 0.057 0.943 43 H 0.106 0.894 44 H 0.129 0.871 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.797 13.410 -0.266 14.245 hybrid contribution -0.892 -0.450 0.090 1.003 sum 3.906 12.960 -0.176 13.537 Atomic orbital electron populations 1.23279 0.76271 1.04851 1.01041 1.86414 1.24035 1.33653 1.85138 1.23878 0.92444 0.80748 0.69398 1.90476 1.67333 1.37803 1.47328 1.20531 0.87302 0.85489 1.03680 1.43354 1.56252 1.08239 1.06640 1.20239 1.19634 1.21040 0.83838 0.86233 1.26233 0.94229 0.96784 1.02960 1.69654 1.26913 1.28204 1.29429 0.85127 0.78742 0.78904 0.76343 1.19056 1.21417 1.18127 1.17606 0.81018 0.85235 0.83605 1.90545 1.58793 1.70041 1.32196 1.21719 1.10395 0.94519 0.91830 1.21589 1.11831 0.92164 0.99480 1.21792 1.05450 0.98490 0.85023 1.20710 1.04065 0.89930 0.99166 1.46534 1.47472 1.06801 1.06372 1.21389 0.98212 0.83991 0.88760 1.22413 0.97341 0.96532 1.05684 1.22017 1.02152 1.02491 0.93899 1.22326 0.91645 1.02247 1.05028 1.74100 1.17396 0.91296 1.25280 0.93262 0.84608 0.93791 0.89423 0.85792 0.92152 0.83146 0.89122 0.88405 0.88796 0.93942 0.86853 0.89048 0.92948 0.87303 0.94266 0.89412 0.87072 0.93406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.42 10.56 113.37 1.20 2.62 16 2 O -0.38 -17.21 10.57 -51.42 -0.54 -17.75 16 3 C 0.49 26.57 5.96 71.24 0.42 27.00 16 4 O -0.54 -32.96 15.41 21.99 0.34 -32.62 16 5 C 0.16 8.21 5.17 85.63 0.44 8.66 16 6 N -0.43 -24.22 2.16 -643.13 -1.39 -25.62 16 7 C -0.32 -17.60 8.17 84.09 0.69 -16.91 16 8 H 0.12 6.48 5.68 -2.91 -0.02 6.46 16 9 C 0.00 -0.06 5.34 84.95 0.45 0.39 16 10 N -0.90 -50.03 8.59 21.68 0.19 -49.84 16 11 Si 0.99 42.59 29.56 68.60 2.03 44.61 16 12 H -0.27 -11.22 6.97 99.48 0.69 -10.53 16 13 H -0.29 -12.38 7.11 99.48 0.71 -11.68 16 14 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 15 C 0.53 30.69 7.39 86.72 0.64 31.33 16 16 O -0.63 -37.79 16.58 -4.05 -0.07 -37.86 16 17 C -0.03 -1.33 6.86 42.43 0.29 -1.04 16 18 C -0.22 -9.28 10.73 22.42 0.24 -9.04 16 19 C 0.02 0.55 6.42 41.40 0.27 0.81 16 20 C -0.08 -1.48 8.43 71.23 0.60 -0.88 16 21 N -0.28 -9.81 3.18 -294.73 -0.94 -10.75 16 22 C 0.16 3.81 1.06 3.60 0.00 3.82 16 23 C -0.16 -2.89 8.36 71.98 0.60 -2.29 16 24 C -0.15 -4.10 7.91 71.98 0.57 -3.53 16 25 C -0.15 -2.62 8.49 71.98 0.61 -2.01 16 26 N -0.25 -11.30 7.63 -48.19 -0.37 -11.67 16 27 H 0.05 1.78 8.13 -2.38 -0.02 1.76 16 28 H 0.14 3.49 8.14 -2.39 -0.02 3.47 16 29 H 0.04 1.68 8.13 -2.39 -0.02 1.66 16 30 H 0.09 4.37 7.55 -2.39 -0.02 4.35 16 31 H 0.12 6.44 6.81 -2.39 -0.02 6.42 16 32 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 33 H 0.15 5.98 8.06 -2.91 -0.02 5.96 16 34 H 0.09 1.39 7.43 -2.39 -0.02 1.37 16 35 H 0.10 1.25 4.90 -2.39 -0.01 1.24 16 36 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 37 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.11 1.24 8.14 -2.38 -0.02 1.22 16 39 H 0.09 1.28 4.92 -2.39 -0.01 1.26 16 40 H 0.05 1.66 8.07 -2.39 -0.02 1.64 16 41 H 0.11 2.02 8.14 -2.38 -0.02 2.00 16 42 H 0.04 1.34 8.00 -2.38 -0.02 1.32 16 43 H 0.09 1.12 5.53 -2.39 -0.01 1.11 16 44 H 0.11 1.16 8.13 -2.38 -0.02 1.14 16 45 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 Total: -1.00 -82.20 364.23 7.27 -74.93 By element: Atomic # 1 Polarization: 26.65 SS G_CDS: 0.99 Total: 27.64 kcal Atomic # 6 Polarization: 31.89 SS G_CDS: 7.03 Total: 38.92 kcal Atomic # 7 Polarization: -95.37 SS G_CDS: -2.51 Total: -97.88 kcal Atomic # 8 Polarization: -87.96 SS G_CDS: -0.27 Total: -88.23 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.61 kcal Total: -82.20 7.27 -74.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120581324.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.582 kcal (2) G-P(sol) polarization free energy of solvation -82.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds