Wall clock time and date at job start Tue Mar 31 2020 14:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34232 * 116.99723 * 2 1 4 4 O 1.20827 * 120.00165 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99851 * 180.02562 * 3 2 1 6 6 N 1.46493 * 109.47182 * 179.97438 * 5 3 2 7 7 C 1.36979 * 120.00552 * 270.00119 * 6 5 3 8 8 H 1.07995 * 120.00716 * 124.54421 * 7 6 5 9 9 C 1.38977 * 119.99621 * 304.55104 * 7 6 5 10 10 N 1.31414 * 120.00271 * 183.86320 * 9 7 6 11 11 Si 1.86805 * 120.00153 * 3.86663 * 9 7 6 12 12 H 1.48493 * 109.47214 * 94.65287 * 11 9 7 13 13 H 1.48503 * 109.47013 * 214.65470 * 11 9 7 14 14 H 1.48497 * 109.47004 * 334.65108 * 11 9 7 15 15 C 1.34775 * 119.99909 * 90.00062 * 6 5 3 16 16 O 1.21629 * 120.00208 * 3.44263 * 15 6 5 17 17 C 1.47355 * 120.00220 * 183.44175 * 15 6 5 18 18 C 1.41319 * 126.42270 * 352.46322 * 17 15 6 19 19 N 1.30445 * 108.03004 * 180.30225 * 18 17 15 20 20 N 1.39938 * 108.91181 * 359.74707 * 19 18 17 21 21 C 1.46493 * 125.74957 * 179.97438 * 20 19 18 22 22 C 1.52998 * 109.47193 * 246.82035 * 21 20 19 23 23 C 1.53006 * 109.47402 * 6.81811 * 21 20 19 24 24 C 1.52995 * 109.47076 * 126.81853 * 21 20 19 25 25 C 1.34280 * 108.49645 * 0.02562 * 20 19 18 26 26 C 1.50702 * 126.29564 * 180.02562 * 25 20 19 27 27 H 1.08996 * 109.46823 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46950 * 299.99614 * 1 2 3 29 29 H 1.08998 * 109.46925 * 59.99696 * 1 2 3 30 30 H 1.08998 * 109.46833 * 59.99950 * 5 3 2 31 31 H 1.09002 * 109.46822 * 300.00491 * 5 3 2 32 32 H 0.96994 * 120.00463 * 179.97438 * 10 9 7 33 33 H 1.08001 * 125.98324 * 0.05425 * 18 17 15 34 34 H 1.09000 * 109.47454 * 65.02593 * 22 21 20 35 35 H 1.09001 * 109.46986 * 185.02918 * 22 21 20 36 36 H 1.09000 * 109.46977 * 305.02598 * 22 21 20 37 37 H 1.09001 * 109.47108 * 59.99603 * 23 21 20 38 38 H 1.09001 * 109.47263 * 179.97438 * 23 21 20 39 39 H 1.08999 * 109.47037 * 300.00298 * 23 21 20 40 40 H 1.09001 * 109.47139 * 60.00406 * 24 21 20 41 41 H 1.09001 * 109.47308 * 179.97438 * 24 21 20 42 42 H 1.09000 * 109.47451 * 299.99647 * 24 21 20 43 43 H 1.09000 * 109.47296 * 85.28520 * 26 25 20 44 44 H 1.09001 * 109.47074 * 325.28354 * 26 25 20 45 45 H 1.09006 * 109.47007 * 205.28181 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5664 1.2750 -0.0006 6 7 3.9817 2.6798 -0.0011 7 6 4.1755 3.3364 -1.1875 8 1 3.6435 4.2541 -1.3900 9 6 5.0566 2.8214 -2.1308 10 7 5.3004 3.4894 -3.2360 11 14 5.8947 1.1796 -1.8278 12 1 5.1124 0.0973 -2.4773 13 1 7.2653 1.2107 -2.3986 14 1 5.9725 0.9258 -0.3668 15 6 4.1732 3.3263 1.1659 16 8 4.0623 2.7270 2.2185 17 6 4.5170 4.7592 1.1666 18 6 4.8246 5.5488 0.0358 19 7 5.0792 6.7605 0.4465 20 7 4.9431 6.8054 1.8385 21 6 5.1453 7.9870 2.6805 22 6 6.3721 7.7755 3.5700 23 6 5.3642 9.2142 1.7933 24 6 3.9109 8.2055 3.5576 25 6 4.5971 5.5827 2.2725 26 6 4.3469 5.1816 3.7034 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 3.9557 0.7810 -0.8908 31 1 3.9564 0.7806 0.8891 32 1 5.9156 3.1302 -3.8941 33 1 4.8489 5.2078 -0.9887 34 1 7.2648 7.7090 2.9481 35 1 6.4706 8.6148 4.2585 36 1 6.2548 6.8522 4.1372 37 1 4.4903 9.3649 1.1595 38 1 5.5142 10.0935 2.4198 39 1 6.2436 9.0585 1.1684 40 1 3.7551 7.3313 4.1898 41 1 4.0615 9.0844 4.1845 42 1 3.0370 8.3562 2.9240 43 1 3.3138 5.4066 3.9685 44 1 5.0191 5.7355 4.3588 45 1 4.5268 4.1126 3.8179 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120615118.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:29 Heat of formation + Delta-G solvation = -21.395281 kcal Electronic energy + Delta-G solvation = -29003.669029 eV Core-core repulsion = 25024.513666 eV Total energy + Delta-G solvation = -3979.155363 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.93117 -39.91729 -38.37686 -36.44583 -35.86820 -34.87769 -32.10391 -31.79090 -30.15961 -28.66631 -27.51636 -27.35093 -26.93272 -26.17580 -24.83354 -22.15109 -21.20493 -20.57645 -18.95828 -18.49273 -17.47903 -17.10221 -16.50115 -15.92825 -15.62881 -15.43590 -15.08449 -14.87064 -14.41023 -14.11448 -13.89435 -13.69343 -13.48139 -13.15881 -12.90035 -12.63826 -12.54713 -12.28324 -12.26739 -12.18912 -12.05800 -11.94185 -11.79011 -11.69924 -11.57360 -11.49236 -11.18304 -11.11755 -10.92778 -10.46382 -10.33753 -10.11386 -9.88454 -9.73942 -9.09138 -8.73946 -8.58702 -7.90065 -7.61205 -6.48182 -4.34854 2.23088 2.85687 2.87638 3.02127 3.04380 3.20517 3.21042 3.33497 4.05895 4.35140 4.48718 4.58153 4.76038 4.85454 4.86919 5.09770 5.27656 5.36624 5.41154 5.44171 5.45105 5.46742 5.56453 5.62864 5.68574 5.70697 5.77819 5.79088 5.84526 5.90555 5.92714 6.00622 6.13533 6.27472 6.31759 6.38464 6.56487 6.81839 6.86749 7.35008 7.57162 7.61807 7.99379 8.19314 8.40900 8.47383 8.90602 9.23284 9.60167 10.57143 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013816 B = 0.004715 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.111360 B = 5937.134609 C = 7047.622528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.370 6.370 3 C 0.446 3.554 4 O -0.490 6.490 5 C 0.114 3.886 6 N -0.456 5.456 7 C -0.344 4.344 8 H 0.111 0.889 9 C 0.070 3.930 10 N -0.861 5.861 11 Si 0.871 3.129 12 H -0.269 1.269 13 H -0.282 1.282 14 H -0.255 1.255 15 C 0.590 3.410 16 O -0.596 6.596 17 C -0.261 4.261 18 C 0.100 3.900 19 N -0.323 5.323 20 N -0.365 5.365 21 C 0.181 3.819 22 C -0.165 4.165 23 C -0.139 4.139 24 C -0.168 4.168 25 C 0.130 3.870 26 C -0.100 4.100 27 H 0.094 0.906 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.097 0.903 31 H 0.112 0.888 32 H 0.278 0.722 33 H 0.232 0.768 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.228 3.266 10.362 10.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.287 6.287 3 C 0.287 3.713 4 O -0.374 6.374 5 C -0.011 4.011 6 N -0.177 5.177 7 C -0.471 4.471 8 H 0.129 0.871 9 C -0.138 4.138 10 N -0.496 5.496 11 Si 0.698 3.302 12 H -0.195 1.195 13 H -0.209 1.209 14 H -0.179 1.179 15 C 0.382 3.618 16 O -0.481 6.481 17 C -0.275 4.275 18 C -0.086 4.086 19 N -0.142 5.142 20 N -0.146 5.146 21 C 0.098 3.902 22 C -0.223 4.223 23 C -0.196 4.196 24 C -0.226 4.226 25 C -0.002 4.002 26 C -0.158 4.158 27 H 0.112 0.888 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.115 0.885 31 H 0.130 0.870 32 H 0.089 0.911 33 H 0.248 0.752 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.092 0.908 44 H 0.084 0.916 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.060 4.621 10.384 11.415 hybrid contribution -0.158 -1.638 -0.116 1.650 sum -1.218 2.983 10.268 10.762 Atomic orbital electron populations 1.23124 0.77693 1.02768 1.02201 1.86535 1.22565 1.34680 1.84951 1.24941 0.93038 0.81134 0.72210 1.90618 1.66638 1.36255 1.43926 1.21392 0.86139 0.89310 1.04244 1.43053 1.60343 1.07949 1.06377 1.19128 1.24963 1.09818 0.93233 0.87144 1.25556 0.94872 0.98141 0.95237 1.69620 1.33790 1.37871 1.08282 0.86953 0.79594 0.83594 0.80034 1.19537 1.20874 1.17883 1.17363 0.76176 0.85555 0.82705 1.90554 1.57098 1.68735 1.31702 1.19804 1.20186 0.95187 0.92316 1.25923 0.92255 0.88109 1.02347 1.77212 1.27026 1.22453 0.87468 1.48657 1.53210 1.06836 1.05917 1.20566 0.95827 0.84095 0.89708 1.22363 0.97288 1.02939 0.99704 1.21848 1.03916 0.94576 0.99295 1.22401 0.97144 1.03134 0.99946 1.21223 0.97150 0.85449 0.96328 1.20817 1.01511 1.04997 0.88474 0.88789 0.92402 0.92240 0.88543 0.86979 0.91117 0.75221 0.91578 0.90743 0.91351 0.91473 0.91563 0.91099 0.90989 0.90666 0.91644 0.90766 0.91593 0.87544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.56 101.05 1.07 1.58 16 2 O -0.37 -6.77 10.57 -39.26 -0.41 -7.18 16 3 C 0.45 9.70 8.02 36.01 0.29 9.99 16 4 O -0.49 -11.96 16.18 -18.75 -0.30 -12.26 16 5 C 0.11 2.52 4.28 -5.20 -0.02 2.49 16 6 N -0.46 -11.13 1.52 -117.34 -0.18 -11.31 16 7 C -0.34 -8.79 6.75 -14.98 -0.10 -8.89 16 8 H 0.11 3.04 6.15 -52.49 -0.32 2.72 16 9 C 0.07 1.78 5.49 -17.46 -0.10 1.69 16 10 N -0.86 -22.69 13.96 55.50 0.77 -21.91 16 11 Si 0.87 19.35 24.85 -169.99 -4.23 15.13 16 12 H -0.27 -5.73 7.10 56.52 0.40 -5.33 16 13 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 14 H -0.25 -5.58 6.40 56.52 0.36 -5.22 16 15 C 0.59 14.40 7.62 -12.55 -0.10 14.30 16 16 O -0.60 -14.69 14.29 5.25 0.08 -14.61 16 17 C -0.26 -5.94 6.02 -105.06 -0.63 -6.58 16 18 C 0.10 2.28 10.24 -16.97 -0.17 2.10 16 19 N -0.32 -6.76 11.54 30.87 0.36 -6.41 16 20 N -0.37 -6.53 3.43 -43.99 -0.15 -6.68 16 21 C 0.18 2.38 1.07 -131.82 -0.14 2.24 16 22 C -0.17 -1.82 8.58 37.16 0.32 -1.50 16 23 C -0.14 -1.69 7.99 37.16 0.30 -1.40 16 24 C -0.17 -1.85 8.37 37.16 0.31 -1.53 16 25 C 0.13 2.50 6.50 -81.57 -0.53 1.97 16 26 C -0.10 -1.56 8.09 36.01 0.29 -1.27 16 27 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.06 0.81 8.13 -51.93 -0.42 0.38 16 29 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 30 H 0.10 2.06 3.86 -51.93 -0.20 1.86 16 31 H 0.11 2.32 7.38 -51.93 -0.38 1.94 16 32 H 0.28 6.89 8.31 -40.82 -0.34 6.55 16 33 H 0.23 5.68 4.79 -52.49 -0.25 5.43 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.76 5.43 -51.93 -0.28 0.48 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.95 8.11 -51.93 -0.42 0.53 16 40 H 0.07 0.78 5.03 -51.93 -0.26 0.52 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.07 1.06 7.51 -51.93 -0.39 0.68 16 44 H 0.07 0.82 4.97 -51.93 -0.26 0.56 16 45 H 0.11 1.87 6.14 -51.93 -0.32 1.55 16 LS Contribution 357.47 15.07 5.39 5.39 Total: -1.00 -31.20 357.47 -3.97 -35.17 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -6.07 Total: 9.49 kcal Atomic # 6 Polarization: 14.42 SS G_CDS: 0.78 Total: 15.20 kcal Atomic # 7 Polarization: -47.11 SS G_CDS: 0.80 Total: -46.31 kcal Atomic # 8 Polarization: -33.41 SS G_CDS: -0.64 Total: -34.06 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -4.23 Total: 15.13 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.20 -3.97 -35.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120615118.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.770 kcal (2) G-P(sol) polarization free energy of solvation -31.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds