Wall clock time and date at job start Tue Mar 31 2020 14:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34232 * 116.99723 * 2 1 4 4 O 1.20827 * 120.00165 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99851 * 180.02562 * 3 2 1 6 6 N 1.46493 * 109.47182 * 179.97438 * 5 3 2 7 7 C 1.36979 * 120.00552 * 270.00119 * 6 5 3 8 8 H 1.07995 * 120.00716 * 124.54421 * 7 6 5 9 9 C 1.38977 * 119.99621 * 304.55104 * 7 6 5 10 10 N 1.31414 * 120.00271 * 183.86320 * 9 7 6 11 11 Si 1.86805 * 120.00153 * 3.86663 * 9 7 6 12 12 H 1.48493 * 109.47214 * 94.65287 * 11 9 7 13 13 H 1.48503 * 109.47013 * 214.65470 * 11 9 7 14 14 H 1.48497 * 109.47004 * 334.65108 * 11 9 7 15 15 C 1.34775 * 119.99909 * 90.00062 * 6 5 3 16 16 O 1.21629 * 120.00208 * 3.44263 * 15 6 5 17 17 C 1.47355 * 120.00220 * 183.44175 * 15 6 5 18 18 C 1.41319 * 126.42270 * 352.46322 * 17 15 6 19 19 N 1.30445 * 108.03004 * 180.30225 * 18 17 15 20 20 N 1.39938 * 108.91181 * 359.74707 * 19 18 17 21 21 C 1.46493 * 125.74957 * 179.97438 * 20 19 18 22 22 C 1.52998 * 109.47193 * 246.82035 * 21 20 19 23 23 C 1.53006 * 109.47402 * 6.81811 * 21 20 19 24 24 C 1.52995 * 109.47076 * 126.81853 * 21 20 19 25 25 C 1.34280 * 108.49645 * 0.02562 * 20 19 18 26 26 C 1.50702 * 126.29564 * 180.02562 * 25 20 19 27 27 H 1.08996 * 109.46823 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46950 * 299.99614 * 1 2 3 29 29 H 1.08998 * 109.46925 * 59.99696 * 1 2 3 30 30 H 1.08998 * 109.46833 * 59.99950 * 5 3 2 31 31 H 1.09002 * 109.46822 * 300.00491 * 5 3 2 32 32 H 0.96994 * 120.00463 * 179.97438 * 10 9 7 33 33 H 1.08001 * 125.98324 * 0.05425 * 18 17 15 34 34 H 1.09000 * 109.47454 * 65.02593 * 22 21 20 35 35 H 1.09001 * 109.46986 * 185.02918 * 22 21 20 36 36 H 1.09000 * 109.46977 * 305.02598 * 22 21 20 37 37 H 1.09001 * 109.47108 * 59.99603 * 23 21 20 38 38 H 1.09001 * 109.47263 * 179.97438 * 23 21 20 39 39 H 1.08999 * 109.47037 * 300.00298 * 23 21 20 40 40 H 1.09001 * 109.47139 * 60.00406 * 24 21 20 41 41 H 1.09001 * 109.47308 * 179.97438 * 24 21 20 42 42 H 1.09000 * 109.47451 * 299.99647 * 24 21 20 43 43 H 1.09000 * 109.47296 * 85.28520 * 26 25 20 44 44 H 1.09001 * 109.47074 * 325.28354 * 26 25 20 45 45 H 1.09006 * 109.47007 * 205.28181 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5664 1.2750 -0.0006 6 7 3.9817 2.6798 -0.0011 7 6 4.1755 3.3364 -1.1875 8 1 3.6435 4.2541 -1.3900 9 6 5.0566 2.8214 -2.1308 10 7 5.3004 3.4894 -3.2360 11 14 5.8947 1.1796 -1.8278 12 1 5.1124 0.0973 -2.4773 13 1 7.2653 1.2107 -2.3986 14 1 5.9725 0.9258 -0.3668 15 6 4.1732 3.3263 1.1659 16 8 4.0623 2.7270 2.2185 17 6 4.5170 4.7592 1.1666 18 6 4.8246 5.5488 0.0358 19 7 5.0792 6.7605 0.4465 20 7 4.9431 6.8054 1.8385 21 6 5.1453 7.9870 2.6805 22 6 6.3721 7.7755 3.5700 23 6 5.3642 9.2142 1.7933 24 6 3.9109 8.2055 3.5576 25 6 4.5971 5.5827 2.2725 26 6 4.3469 5.1816 3.7034 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 3.9557 0.7810 -0.8908 31 1 3.9564 0.7806 0.8891 32 1 5.9156 3.1302 -3.8941 33 1 4.8489 5.2078 -0.9887 34 1 7.2648 7.7090 2.9481 35 1 6.4706 8.6148 4.2585 36 1 6.2548 6.8522 4.1372 37 1 4.4903 9.3649 1.1595 38 1 5.5142 10.0935 2.4198 39 1 6.2436 9.0585 1.1684 40 1 3.7551 7.3313 4.1898 41 1 4.0615 9.0844 4.1845 42 1 3.0370 8.3562 2.9240 43 1 3.3138 5.4066 3.9685 44 1 5.0191 5.7355 4.3588 45 1 4.5268 4.1126 3.8179 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120615118.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:28 Heat of formation + Delta-G solvation = -41.375091 kcal Electronic energy + Delta-G solvation = -29004.535418 eV Core-core repulsion = 25024.513666 eV Total energy + Delta-G solvation = -3980.021752 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.48384 -41.57897 -40.10496 -37.65968 -37.51388 -36.72432 -34.03829 -33.24589 -31.74330 -30.19232 -28.57196 -28.36926 -28.10411 -27.70874 -26.68648 -23.61957 -22.84818 -22.19425 -20.75807 -19.90175 -19.17599 -18.81611 -18.09872 -17.47639 -17.17910 -16.99117 -16.57683 -16.45301 -15.84647 -15.58929 -15.37638 -15.06178 -14.83751 -14.71348 -14.45415 -14.21669 -14.00056 -13.79206 -13.56222 -13.48868 -13.24931 -13.10627 -13.10596 -13.03695 -12.92896 -12.80173 -12.64702 -12.25872 -12.18163 -12.11094 -11.91461 -11.79927 -11.49663 -11.35206 -10.98293 -10.59228 -10.10281 -9.72265 -9.32699 -8.43245 -6.34181 0.66328 1.13989 1.26322 1.30787 1.41357 1.45492 1.54310 1.71303 2.20707 2.61996 2.65634 2.96102 3.49508 3.73123 3.78935 3.90100 3.91466 3.96905 4.11840 4.16960 4.22361 4.31381 4.32493 4.50087 4.57879 4.62890 4.65890 4.66429 4.72335 4.74176 4.81652 4.85557 4.91094 4.98454 5.16046 5.24089 5.28184 5.28667 5.33674 5.48757 5.83256 6.09609 6.13769 6.21173 6.75136 6.81757 6.95897 7.31289 7.70627 8.64904 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013816 B = 0.004715 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.111360 B = 5937.134609 C = 7047.622528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.364 6.364 3 C 0.451 3.549 4 O -0.525 6.525 5 C 0.107 3.893 6 N -0.465 5.465 7 C -0.337 4.337 8 H 0.077 0.923 9 C 0.033 3.967 10 N -0.897 5.897 11 Si 0.919 3.081 12 H -0.248 1.248 13 H -0.282 1.282 14 H -0.250 1.250 15 C 0.581 3.419 16 O -0.605 6.605 17 C -0.306 4.306 18 C 0.083 3.917 19 N -0.335 5.335 20 N -0.350 5.350 21 C 0.162 3.838 22 C -0.160 4.160 23 C -0.136 4.136 24 C -0.164 4.164 25 C 0.144 3.856 26 C -0.095 4.095 27 H 0.141 0.859 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.105 0.895 31 H 0.127 0.873 32 H 0.282 0.718 33 H 0.205 0.795 34 H 0.050 0.950 35 H 0.115 0.885 36 H 0.069 0.931 37 H 0.047 0.953 38 H 0.107 0.893 39 H 0.051 0.949 40 H 0.076 0.924 41 H 0.115 0.885 42 H 0.048 0.952 43 H 0.091 0.909 44 H 0.105 0.895 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.149 3.137 13.202 13.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.280 6.280 3 C 0.293 3.707 4 O -0.413 6.413 5 C -0.017 4.017 6 N -0.187 5.187 7 C -0.465 4.465 8 H 0.094 0.906 9 C -0.172 4.172 10 N -0.533 5.533 11 Si 0.743 3.257 12 H -0.173 1.173 13 H -0.208 1.208 14 H -0.174 1.174 15 C 0.375 3.625 16 O -0.491 6.491 17 C -0.320 4.320 18 C -0.102 4.102 19 N -0.155 5.155 20 N -0.131 5.131 21 C 0.081 3.919 22 C -0.218 4.218 23 C -0.194 4.194 24 C -0.222 4.222 25 C 0.010 3.990 26 C -0.152 4.152 27 H 0.159 0.841 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.122 0.878 31 H 0.145 0.855 32 H 0.092 0.908 33 H 0.221 0.779 34 H 0.070 0.930 35 H 0.134 0.866 36 H 0.088 0.912 37 H 0.066 0.934 38 H 0.126 0.874 39 H 0.070 0.930 40 H 0.095 0.905 41 H 0.133 0.867 42 H 0.067 0.933 43 H 0.110 0.890 44 H 0.123 0.877 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.993 4.486 13.220 13.996 hybrid contribution -0.264 -1.469 -0.912 1.749 sum -1.257 3.017 12.308 12.735 Atomic orbital electron populations 1.23551 0.74978 1.05835 1.02158 1.86499 1.25061 1.32389 1.84084 1.24751 0.92956 0.81567 0.71437 1.90606 1.67328 1.37623 1.45779 1.21478 0.86943 0.88050 1.05244 1.43077 1.60871 1.08839 1.05900 1.18785 1.24768 1.09191 0.93783 0.90592 1.26102 0.95164 1.01119 0.94794 1.69713 1.34806 1.39463 1.09275 0.86198 0.78810 0.80400 0.80291 1.17293 1.20816 1.17351 1.17686 0.75923 0.86288 0.82647 1.90517 1.57823 1.69143 1.31654 1.19970 1.23203 0.95222 0.93628 1.25448 0.93925 0.89177 1.01665 1.77103 1.27137 1.21425 0.89791 1.49161 1.50919 1.07991 1.05041 1.21269 0.98348 0.82393 0.89863 1.22371 0.95121 1.04781 0.99528 1.21868 1.02146 0.95873 0.99471 1.22427 0.95003 1.05208 0.99583 1.21712 0.94911 0.85167 0.97246 1.20914 1.03504 1.04324 0.86488 0.84126 0.92345 0.92516 0.87789 0.85538 0.90804 0.77916 0.93033 0.86645 0.91234 0.93351 0.87408 0.92972 0.90474 0.86657 0.93329 0.89050 0.87716 0.89373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 10.56 113.37 1.20 1.93 16 2 O -0.36 -12.78 10.57 -51.44 -0.54 -13.32 16 3 C 0.45 19.59 8.02 71.24 0.57 20.16 16 4 O -0.53 -26.21 16.18 21.96 0.36 -25.86 16 5 C 0.11 4.73 4.28 85.64 0.37 5.10 16 6 N -0.47 -23.43 1.52 -643.39 -0.98 -24.41 16 7 C -0.34 -18.18 6.75 84.07 0.57 -17.61 16 8 H 0.08 4.57 6.15 -2.91 -0.02 4.55 16 9 C 0.03 1.75 5.49 84.93 0.47 2.22 16 10 N -0.90 -49.36 13.96 21.67 0.30 -49.05 16 11 Si 0.92 39.93 24.85 68.60 1.71 41.63 16 12 H -0.25 -9.89 7.10 99.48 0.71 -9.19 16 13 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 14 H -0.25 -10.58 6.40 99.48 0.64 -9.94 16 15 C 0.58 29.21 7.62 86.64 0.66 29.87 16 16 O -0.61 -30.11 14.29 -4.12 -0.06 -30.17 16 17 C -0.31 -14.48 6.02 -20.15 -0.12 -14.61 16 18 C 0.08 4.06 10.24 85.66 0.88 4.94 16 19 N -0.34 -14.62 11.54 -56.26 -0.65 -15.27 16 20 N -0.35 -12.40 3.43 -293.10 -1.01 -13.41 16 21 C 0.16 3.86 1.07 3.60 0.00 3.86 16 22 C -0.16 -2.95 8.58 71.98 0.62 -2.33 16 23 C -0.14 -3.08 7.99 71.98 0.58 -2.50 16 24 C -0.16 -3.01 8.37 71.98 0.60 -2.41 16 25 C 0.14 5.50 6.50 42.15 0.27 5.78 16 26 C -0.09 -2.75 8.09 71.24 0.58 -2.18 16 27 H 0.14 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.06 1.54 8.13 -2.39 -0.02 1.52 16 29 H 0.06 1.53 8.13 -2.39 -0.02 1.52 16 30 H 0.10 4.38 3.86 -2.39 -0.01 4.37 16 31 H 0.13 5.16 7.38 -2.39 -0.02 5.14 16 32 H 0.28 14.45 8.31 -92.71 -0.77 13.67 16 33 H 0.20 11.01 4.79 -2.91 -0.01 11.00 16 34 H 0.05 1.11 8.14 -2.39 -0.02 1.10 16 35 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.07 1.27 5.43 -2.39 -0.01 1.26 16 37 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.05 1.37 8.11 -2.39 -0.02 1.35 16 40 H 0.08 1.35 5.03 -2.39 -0.01 1.34 16 41 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.09 2.39 7.51 -2.39 -0.02 2.37 16 44 H 0.10 2.20 4.97 -2.39 -0.01 2.19 16 45 H 0.09 2.98 6.14 -2.38 -0.01 2.97 16 Total: -1.00 -72.63 357.47 7.32 -65.32 By element: Atomic # 1 Polarization: 31.37 SS G_CDS: 0.96 Total: 32.33 kcal Atomic # 6 Polarization: 24.98 SS G_CDS: 7.24 Total: 32.22 kcal Atomic # 7 Polarization: -99.81 SS G_CDS: -2.33 Total: -102.14 kcal Atomic # 8 Polarization: -69.11 SS G_CDS: -0.25 Total: -69.35 kcal Atomic # 14 Polarization: 39.93 SS G_CDS: 1.71 Total: 41.63 kcal Total: -72.63 7.32 -65.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120615118.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.942 kcal (2) G-P(sol) polarization free energy of solvation -72.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds