Wall clock time and date at job start Tue Mar 31 2020 13:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.47036 * 2 1 4 4 C 1.36937 * 119.99879 * 264.23746 * 3 2 1 5 5 H 1.08007 * 119.99887 * 187.56805 * 4 3 2 6 6 C 1.38814 * 120.00471 * 7.56095 * 4 3 2 7 7 N 1.31621 * 119.99653 * 23.06944 * 6 4 3 8 8 Si 1.86799 * 120.00190 * 203.06919 * 6 4 3 9 9 H 1.48504 * 109.46998 * 90.00313 * 8 6 4 10 10 H 1.48505 * 109.47024 * 209.99822 * 8 6 4 11 11 H 1.48494 * 109.47156 * 329.99809 * 8 6 4 12 12 C 1.46495 * 120.00055 * 84.23210 * 3 2 1 13 13 C 1.53009 * 109.46934 * 96.21503 * 12 3 2 14 14 H 1.08994 * 109.46910 * 58.69511 * 13 12 3 15 15 O 1.42901 * 109.46755 * 298.69359 * 13 12 3 16 16 C 1.52997 * 109.46932 * 178.69420 * 13 12 3 17 17 O 1.42899 * 109.46652 * 184.99937 * 16 13 12 18 18 C 1.35701 * 116.99600 * 179.97438 * 17 16 13 19 19 C 1.39011 * 119.90942 * 359.72980 * 18 17 16 20 20 C 1.37685 * 120.09339 * 179.72460 * 19 18 17 21 21 C 1.39793 * 119.90366 * 0.54629 * 20 19 18 22 22 C 1.47472 * 120.08990 * 179.70613 * 21 20 19 23 23 O 1.21503 * 120.00163 * 180.02562 * 22 21 20 24 24 O 1.34752 * 120.00053 * 0.02562 * 22 21 20 25 25 C 1.45201 * 116.99771 * 179.97438 * 24 22 21 26 26 C 1.39783 * 119.81662 * 359.72327 * 21 20 19 27 27 C 1.37679 * 119.90863 * 0.02562 * 26 21 20 28 28 H 1.08998 * 109.46754 * 174.86217 * 1 2 3 29 29 H 1.08998 * 109.46921 * 294.85930 * 1 2 3 30 30 H 1.09003 * 109.47114 * 54.86272 * 1 2 3 31 31 H 1.09007 * 109.47060 * 240.00413 * 2 1 3 32 32 H 1.08999 * 109.47268 * 120.00103 * 2 1 3 33 33 H 0.97003 * 120.00042 * 179.97438 * 7 6 4 34 34 H 1.08998 * 109.47176 * 216.21695 * 12 3 2 35 35 H 1.09003 * 109.47458 * 336.21648 * 12 3 2 36 36 H 0.96697 * 114.00104 * 299.99875 * 15 13 12 37 37 H 1.09000 * 109.47406 * 305.00011 * 16 13 12 38 38 H 1.08999 * 109.47327 * 65.00150 * 16 13 12 39 39 H 1.08001 * 119.95442 * 359.97438 * 19 18 17 40 40 H 1.08004 * 120.04549 * 180.25031 * 20 19 18 41 41 H 1.08997 * 109.47032 * 60.00065 * 25 24 22 42 42 H 1.08996 * 109.46779 * 179.97438 * 25 24 22 43 43 H 1.08995 * 109.47364 * 299.99916 * 25 24 22 44 44 H 1.08001 * 120.05249 * 179.97438 * 26 21 20 45 45 H 1.08000 * 119.95917 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3588 1.9870 -1.1799 5 1 2.8324 2.9577 -1.1716 6 6 2.0955 1.3537 -2.3867 7 7 1.1534 0.4371 -2.4570 8 14 3.0780 1.8021 -3.9109 9 1 4.2776 0.9313 -4.0004 10 1 2.2348 1.6087 -5.1180 11 1 3.5025 3.2225 -3.8260 12 6 2.1423 2.1143 1.2623 13 6 3.5832 2.0188 1.7681 14 1 4.2593 2.4306 1.0189 15 8 3.9142 0.6494 2.0073 16 6 3.7204 2.8116 3.0695 17 8 5.0891 2.8197 3.4801 18 6 5.3848 3.4857 4.6249 19 6 4.3752 4.1243 5.3358 20 6 4.6701 4.7963 6.5008 21 6 5.9887 4.8456 6.9623 22 6 6.3101 5.5698 8.2061 23 8 7.4569 5.6120 8.6055 24 8 5.3321 6.1847 8.8997 25 6 5.7214 6.8777 10.1148 26 6 7.0017 4.2069 6.2413 27 6 6.6975 3.5326 5.0801 28 1 -0.3633 -1.0235 -0.0920 29 1 -0.3633 0.4320 0.9324 30 1 -0.3633 0.5915 -0.8404 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8900 33 1 0.9691 -0.0053 -3.3004 34 1 1.8821 3.1606 1.1018 35 1 1.4683 1.6815 2.0015 36 1 3.3517 0.2179 2.6650 37 1 3.3833 3.8355 2.9085 38 1 3.1113 2.3462 3.8444 39 1 3.3575 4.0897 4.9760 40 1 3.8845 5.2887 7.0547 41 1 6.4436 7.6574 9.8729 42 1 4.8414 7.3279 10.5741 43 1 6.1715 6.1684 10.8093 44 1 8.0218 4.2429 6.5942 45 1 7.4796 3.0392 4.5222 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121000057.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:45 Heat of formation + Delta-G solvation = -116.200407 kcal Electronic energy + Delta-G solvation = -26645.376037 eV Core-core repulsion = 22629.816864 eV Total energy + Delta-G solvation = -4015.559172 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.89120 -40.09146 -38.05556 -36.99540 -36.53771 -35.15182 -31.77630 -31.42008 -30.91202 -30.23555 -28.79118 -27.85589 -25.80454 -23.92476 -23.57596 -22.76463 -21.44504 -20.92796 -20.24167 -18.58081 -17.96898 -17.37641 -16.89550 -16.63819 -16.34969 -16.13022 -15.29835 -15.00311 -14.94032 -14.46964 -14.36157 -13.93407 -13.73136 -13.71331 -13.49811 -13.21204 -13.15999 -12.72968 -12.46856 -12.34631 -11.96814 -11.81287 -11.31234 -11.26845 -11.14396 -11.08909 -10.83432 -10.81960 -10.72764 -10.52895 -10.41019 -9.99604 -9.89239 -9.69500 -9.40142 -9.35670 -8.52945 -8.35000 -6.88970 -5.78335 -3.10046 0.50218 1.04347 2.29091 2.39865 2.99059 3.39763 3.47073 3.48208 3.50082 4.40744 4.47308 4.50546 4.56926 4.75525 4.76005 4.83148 4.86720 4.91954 5.08748 5.14960 5.15604 5.25696 5.35249 5.39574 5.63583 5.68931 5.74045 5.82385 5.89916 5.97790 5.99593 6.12585 6.35445 6.40940 6.54937 6.58952 6.89626 7.01307 7.13081 7.20497 7.46319 7.63385 7.81558 8.03676 8.12658 8.35705 9.21381 9.83786 10.27184 11.25113 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.025560 B = 0.002106 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.208355 B =13292.754208 C =13705.056214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.167 3.833 3 N -0.585 5.585 4 C -0.252 4.252 5 H 0.073 0.927 6 C -0.001 4.001 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.288 1.288 10 H -0.293 1.293 11 H -0.282 1.282 12 C 0.129 3.871 13 C 0.086 3.914 14 H 0.106 0.894 15 O -0.542 6.542 16 C 0.023 3.977 17 O -0.294 6.294 18 C 0.178 3.822 19 C -0.229 4.229 20 C -0.017 4.017 21 C -0.182 4.182 22 C 0.515 3.485 23 O -0.514 6.514 24 O -0.357 6.357 25 C 0.037 3.963 26 C -0.012 4.012 27 C -0.169 4.169 28 H 0.023 0.977 29 H 0.005 0.995 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.005 0.995 33 H 0.252 0.748 34 H 0.052 0.948 35 H 0.046 0.954 36 H 0.361 0.639 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.063 0.937 42 H 0.102 0.898 43 H 0.063 0.937 44 H 0.142 0.858 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.025 8.597 21.350 23.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.042 3.958 3 N -0.305 5.305 4 C -0.381 4.381 5 H 0.090 0.910 6 C -0.198 4.198 7 N -0.541 5.541 8 Si 0.728 3.272 9 H -0.215 1.215 10 H -0.220 1.220 11 H -0.207 1.207 12 C -0.001 4.001 13 C 0.023 3.977 14 H 0.124 0.876 15 O -0.345 6.345 16 C -0.052 4.052 17 O -0.205 6.205 18 C 0.130 3.870 19 C -0.247 4.247 20 C -0.035 4.035 21 C -0.184 4.184 22 C 0.361 3.639 23 O -0.404 6.404 24 O -0.274 6.274 25 C -0.057 4.057 26 C -0.031 4.031 27 C -0.187 4.187 28 H 0.042 0.958 29 H 0.024 0.976 30 H 0.101 0.899 31 H 0.111 0.889 32 H 0.024 0.976 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.206 0.794 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.156 0.844 40 H 0.157 0.843 41 H 0.082 0.918 42 H 0.120 0.880 43 H 0.082 0.918 44 H 0.160 0.840 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.850 8.549 20.713 23.159 hybrid contribution -0.113 0.390 -0.118 0.423 sum 5.737 8.939 20.595 23.172 Atomic orbital electron populations 1.22241 0.99602 0.98964 0.99511 1.20880 0.91799 0.84250 0.98887 1.43948 1.75200 1.10821 1.00557 1.19232 1.32740 1.02519 0.83587 0.90950 1.24712 0.98168 0.99521 0.97426 1.70184 1.29121 1.29931 1.24909 0.86350 0.80215 0.77898 0.82736 1.21540 1.21997 1.20719 1.21185 0.91788 0.97161 0.89930 1.23106 1.01480 0.81187 0.91955 0.87581 1.86686 1.59982 1.23908 1.63898 1.24017 0.79905 1.02164 0.99161 1.86239 1.29858 1.67886 1.36553 1.19568 0.93762 0.88336 0.85334 1.21324 0.99920 1.04989 0.98509 1.21219 0.95256 0.93320 0.93702 1.18900 0.95253 1.07926 0.96302 1.21130 0.83004 0.76166 0.83611 1.90829 1.21523 1.59034 1.68979 1.86548 1.39607 1.63738 1.37524 1.23269 1.02246 0.96384 0.83761 1.21022 0.99095 0.91208 0.91732 1.20437 0.94685 1.05250 0.98371 0.95801 0.97562 0.89899 0.88875 0.97628 0.93790 0.92993 0.93578 0.79409 0.90940 0.91718 0.84353 0.84298 0.91840 0.87982 0.91837 0.83983 0.83993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 9.63 37.16 0.36 -2.84 16 2 C 0.17 3.89 5.45 -4.04 -0.02 3.87 16 3 N -0.59 -13.66 2.44 -173.23 -0.42 -14.08 16 4 C -0.25 -6.58 9.71 -15.06 -0.15 -6.72 16 5 H 0.07 1.85 7.93 -52.48 -0.42 1.43 16 6 C 0.00 -0.03 4.97 -17.43 -0.09 -0.12 16 7 N -0.90 -24.59 8.57 55.49 0.48 -24.12 16 8 Si 0.90 21.43 29.61 -169.99 -5.03 16.39 16 9 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 C 0.13 2.32 5.36 -4.04 -0.02 2.30 16 13 C 0.09 1.40 3.47 -26.73 -0.09 1.31 16 14 H 0.11 2.01 8.14 -51.93 -0.42 1.58 16 15 O -0.54 -9.46 12.52 -40.09 -0.50 -9.96 16 16 C 0.02 0.29 4.37 37.16 0.16 0.45 16 17 O -0.29 -4.06 10.09 -23.66 -0.24 -4.30 16 18 C 0.18 2.12 6.70 -39.00 -0.26 1.86 16 19 C -0.23 -2.32 9.01 -39.50 -0.36 -2.68 16 20 C -0.02 -0.16 9.61 -39.20 -0.38 -0.54 16 21 C -0.18 -1.96 5.87 -104.98 -0.62 -2.58 16 22 C 0.51 5.82 7.89 34.49 0.27 6.09 16 23 O -0.51 -6.90 16.13 -19.27 -0.31 -7.21 16 24 O -0.36 -3.39 9.81 -40.63 -0.40 -3.79 16 25 C 0.04 0.24 10.57 101.05 1.07 1.31 16 26 C -0.01 -0.13 9.58 -39.21 -0.38 -0.51 16 27 C -0.17 -1.86 9.97 -39.50 -0.39 -2.25 16 28 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.01 0.11 8.14 -51.93 -0.42 -0.31 16 30 H 0.08 2.11 6.63 -51.93 -0.34 1.77 16 31 H 0.09 2.49 5.73 -51.93 -0.30 2.19 16 32 H 0.01 0.12 7.56 -51.93 -0.39 -0.28 16 33 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 34 H 0.05 0.91 8.09 -51.93 -0.42 0.49 16 35 H 0.05 0.75 8.03 -51.93 -0.42 0.33 16 36 H 0.36 4.93 9.05 45.56 0.41 5.34 16 37 H 0.07 0.79 7.64 -51.93 -0.40 0.40 16 38 H 0.06 0.67 7.66 -51.93 -0.40 0.28 16 39 H 0.14 1.18 6.28 -52.49 -0.33 0.85 16 40 H 0.14 1.06 7.60 -52.48 -0.40 0.66 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.14 1.34 7.64 -52.49 -0.40 0.94 16 45 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 377.68 15.07 5.69 5.69 Total: -1.00 -31.31 377.68 -7.52 -38.83 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -5.89 Total: 3.59 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -0.89 Total: -1.05 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 0.05 Total: -38.20 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -1.45 Total: -25.26 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.31 -7.52 -38.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121000057.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.366 kcal (2) G-P(sol) polarization free energy of solvation -31.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds