Wall clock time and date at job start Tue Mar 31 2020 13:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46507 * 109.47158 * 2 1 4 4 C 1.36933 * 120.00147 * 96.12843 * 3 2 1 5 5 H 1.08000 * 120.00019 * 172.48839 * 4 3 2 6 6 C 1.38812 * 120.00084 * 352.49711 * 4 3 2 7 7 N 1.31618 * 120.00057 * 324.25683 * 6 4 3 8 8 Si 1.86797 * 120.00121 * 144.25809 * 6 4 3 9 9 H 1.48503 * 109.47443 * 94.98223 * 8 6 4 10 10 H 1.48502 * 109.47417 * 214.98482 * 8 6 4 11 11 H 1.48501 * 109.47130 * 334.98078 * 8 6 4 12 12 C 1.46495 * 119.99644 * 276.13493 * 3 2 1 13 13 C 1.52998 * 109.47316 * 265.98041 * 12 3 2 14 14 H 1.09007 * 109.47041 * 306.72200 * 13 12 3 15 15 O 1.42901 * 109.47040 * 66.71945 * 13 12 3 16 16 C 1.53001 * 109.47394 * 186.72252 * 13 12 3 17 17 O 1.42898 * 109.46921 * 175.00096 * 16 13 12 18 18 C 1.35704 * 116.99804 * 179.97438 * 17 16 13 19 19 C 1.39011 * 119.90785 * 359.72993 * 18 17 16 20 20 C 1.37677 * 120.09558 * 179.72234 * 19 18 17 21 21 C 1.39795 * 119.90146 * 0.54135 * 20 19 18 22 22 C 1.47471 * 120.08986 * 179.70195 * 21 20 19 23 23 O 1.21507 * 120.00030 * 180.02562 * 22 21 20 24 24 O 1.34749 * 120.00179 * 0.02568 * 22 21 20 25 25 C 1.45192 * 116.99990 * 179.97438 * 24 22 21 26 26 C 1.39789 * 119.81608 * 359.73260 * 21 20 19 27 27 C 1.37672 * 119.90573 * 359.97438 * 26 21 20 28 28 H 1.09000 * 109.47351 * 66.24495 * 1 2 3 29 29 H 1.08997 * 109.46879 * 186.24403 * 1 2 3 30 30 H 1.08999 * 109.47099 * 306.24426 * 1 2 3 31 31 H 1.08994 * 109.47429 * 239.99716 * 2 1 3 32 32 H 1.08999 * 109.47030 * 119.99429 * 2 1 3 33 33 H 0.96996 * 120.00221 * 180.02562 * 7 6 4 34 34 H 1.09002 * 109.47045 * 145.97853 * 12 3 2 35 35 H 1.08998 * 109.47479 * 25.98235 * 12 3 2 36 36 H 0.96699 * 114.00082 * 60.00470 * 15 13 12 37 37 H 1.09001 * 109.47097 * 54.99903 * 16 13 12 38 38 H 1.09001 * 109.46729 * 294.99927 * 16 13 12 39 39 H 1.08004 * 119.94999 * 359.97438 * 19 18 17 40 40 H 1.07995 * 120.04836 * 180.25096 * 20 19 18 41 41 H 1.09006 * 109.47520 * 300.00085 * 25 24 22 42 42 H 1.09004 * 109.47110 * 60.00152 * 25 24 22 43 43 H 1.09007 * 109.47344 * 180.02562 * 25 24 22 44 44 H 1.07999 * 120.04813 * 179.97438 * 26 21 20 45 45 H 1.08007 * 119.95478 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3660 1.9846 1.1791 5 1 2.8387 2.9556 1.1700 6 6 2.1109 1.3481 2.3860 7 7 1.0226 0.6221 2.5301 8 14 3.3123 1.5220 3.8058 9 1 2.8681 2.6227 4.6982 10 1 3.3595 0.2513 4.5729 11 1 4.6646 1.8302 3.2751 12 6 2.1347 2.1170 -1.2615 13 6 3.5583 1.9770 -1.8042 14 1 4.2713 2.2720 -1.0342 15 8 3.7946 0.6177 -2.1765 16 6 3.7282 2.8782 -3.0289 17 8 5.0882 2.8368 -3.4657 18 6 5.4100 3.5863 -4.5502 19 6 4.4317 4.3431 -5.1847 20 6 4.7551 5.1094 -6.2819 21 6 6.0671 5.1169 -6.7644 22 6 6.4167 5.9310 -7.9433 23 8 7.5575 5.9360 -8.3616 24 8 5.4710 6.6695 -8.5565 25 6 5.8869 7.4466 -9.7104 26 6 7.0466 4.3500 -6.1267 27 6 6.7159 3.5912 -5.0266 28 1 -0.3634 0.4140 -0.9406 29 1 -0.3633 -1.0216 0.1118 30 1 -0.3633 0.6076 0.8288 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 0.8442 0.1776 3.3735 34 1 1.9133 3.1703 -1.0895 35 1 1.4283 1.7109 -1.9854 36 1 3.1951 0.2871 -2.8595 37 1 3.4619 3.9021 -2.7663 38 1 3.0782 2.5279 -3.8307 39 1 3.4173 4.3330 -4.8141 40 1 3.9953 5.7001 -6.7718 41 1 6.6624 8.1524 -9.4128 42 1 6.2789 6.7778 -10.4767 43 1 5.0316 7.9933 -10.1077 44 1 8.0613 4.3527 -6.4966 45 1 7.4720 2.9981 -4.5335 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121000225.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:48 Heat of formation + Delta-G solvation = -117.783479 kcal Electronic energy + Delta-G solvation = -26636.709343 eV Core-core repulsion = 22621.081523 eV Total energy + Delta-G solvation = -4015.627820 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.88984 -40.09111 -38.06226 -36.99988 -36.53645 -35.17482 -31.78567 -31.45272 -30.93003 -30.30382 -28.79365 -27.85525 -25.84358 -23.91980 -23.55534 -22.76639 -21.50001 -20.93601 -20.28642 -18.57917 -17.96651 -17.37869 -16.87432 -16.63695 -16.35705 -16.13521 -15.30772 -14.99738 -14.91218 -14.47202 -14.36416 -13.92823 -13.73918 -13.71615 -13.56035 -13.23285 -13.20958 -12.73005 -12.47440 -12.34618 -11.98758 -11.91828 -11.35901 -11.27450 -11.14353 -11.09435 -10.81870 -10.80589 -10.77441 -10.54867 -10.41935 -10.11343 -9.90783 -9.74320 -9.40003 -9.31450 -8.52801 -8.31569 -6.96913 -5.90196 -3.06413 0.50361 1.04552 2.29253 2.40042 2.98968 3.38692 3.49238 3.50263 3.54589 4.40892 4.48487 4.50731 4.57238 4.74133 4.75670 4.83273 4.86652 4.91610 5.08577 5.14099 5.15433 5.23589 5.29354 5.39383 5.59628 5.68781 5.73763 5.82422 5.90333 5.97977 5.99636 6.12743 6.35248 6.39526 6.48269 6.58327 6.83508 6.96550 7.04150 7.20485 7.46498 7.55299 7.71525 8.02022 8.09246 8.25631 9.15435 9.81761 10.27208 11.16031 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.024745 B = 0.002121 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.291746 B =13199.219110 C =13584.467703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.170 3.830 3 N -0.583 5.583 4 C -0.269 4.269 5 H 0.073 0.927 6 C 0.012 3.988 7 N -0.875 5.875 8 Si 0.875 3.125 9 H -0.291 1.291 10 H -0.289 1.289 11 H -0.280 1.280 12 C 0.130 3.870 13 C 0.085 3.915 14 H 0.109 0.891 15 O -0.544 6.544 16 C 0.024 3.976 17 O -0.294 6.294 18 C 0.178 3.822 19 C -0.229 4.229 20 C -0.017 4.017 21 C -0.182 4.182 22 C 0.515 3.485 23 O -0.514 6.514 24 O -0.357 6.357 25 C 0.037 3.963 26 C -0.012 4.012 27 C -0.169 4.169 28 H 0.010 0.990 29 H 0.023 0.977 30 H 0.091 0.909 31 H 0.015 0.985 32 H 0.072 0.928 33 H 0.253 0.747 34 H 0.054 0.946 35 H 0.045 0.955 36 H 0.361 0.639 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.102 0.898 44 H 0.142 0.858 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.232 8.962 -21.129 23.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.045 3.955 3 N -0.304 5.304 4 C -0.397 4.397 5 H 0.091 0.909 6 C -0.187 4.187 7 N -0.518 5.518 8 Si 0.704 3.296 9 H -0.218 1.218 10 H -0.215 1.215 11 H -0.205 1.205 12 C 0.001 3.999 13 C 0.022 3.978 14 H 0.127 0.873 15 O -0.348 6.348 16 C -0.052 4.052 17 O -0.205 6.205 18 C 0.130 3.870 19 C -0.247 4.247 20 C -0.035 4.035 21 C -0.184 4.184 22 C 0.361 3.639 23 O -0.404 6.404 24 O -0.274 6.274 25 C -0.057 4.057 26 C -0.031 4.031 27 C -0.187 4.187 28 H 0.029 0.971 29 H 0.042 0.958 30 H 0.110 0.890 31 H 0.033 0.967 32 H 0.090 0.910 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.206 0.794 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.157 0.843 40 H 0.157 0.843 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.120 0.880 44 H 0.160 0.840 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 6.050 8.799 -20.520 23.132 hybrid contribution 0.005 0.320 0.165 0.360 sum 6.056 9.119 -20.355 23.112 Atomic orbital electron populations 1.22306 0.99383 0.99433 1.00234 1.20623 0.92030 0.84394 0.98421 1.43968 1.75196 1.10398 1.00794 1.19070 1.33818 1.03377 0.83413 0.90880 1.24590 0.96880 1.00331 0.96905 1.70290 1.20950 1.35663 1.24910 0.86700 0.83211 0.77037 0.82682 1.21786 1.21540 1.20531 1.21173 0.91881 0.97104 0.89761 1.23160 1.02041 0.80321 0.92241 0.87330 1.86682 1.60183 1.27096 1.60798 1.24010 0.80105 1.02294 0.98816 1.86237 1.30663 1.62173 1.41471 1.19564 0.93599 0.88031 0.85798 1.21323 1.00254 1.02992 1.00164 1.21217 0.94951 0.94132 0.93194 1.18902 0.95700 1.05386 0.98392 1.21131 0.82936 0.77243 0.82602 1.90830 1.21263 1.63367 1.64910 1.86546 1.41007 1.56497 1.43362 1.23272 1.01966 0.94760 0.85664 1.21021 0.99065 0.90968 0.92002 1.20433 0.94759 1.04471 0.99080 0.97112 0.95752 0.89037 0.96660 0.91012 0.93678 0.92772 0.93648 0.79389 0.90885 0.91730 0.84347 0.84297 0.91839 0.91841 0.87981 0.83985 0.83997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 9.70 37.16 0.36 -3.03 16 2 C 0.17 3.93 5.53 -4.04 -0.02 3.91 16 3 N -0.58 -13.53 2.51 -173.24 -0.43 -13.97 16 4 C -0.27 -7.01 9.61 -15.06 -0.14 -7.15 16 5 H 0.07 1.87 8.03 -52.49 -0.42 1.45 16 6 C 0.01 0.33 4.57 -17.43 -0.08 0.25 16 7 N -0.88 -24.00 9.34 55.49 0.52 -23.48 16 8 Si 0.88 21.12 29.67 -169.99 -5.04 16.08 16 9 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 C 0.13 2.33 5.33 -4.05 -0.02 2.31 16 13 C 0.09 1.38 3.47 -26.73 -0.09 1.29 16 14 H 0.11 2.07 8.14 -51.92 -0.42 1.65 16 15 O -0.54 -9.26 12.55 -40.09 -0.50 -9.76 16 16 C 0.02 0.29 4.37 37.16 0.16 0.46 16 17 O -0.29 -4.05 10.09 -23.67 -0.24 -4.29 16 18 C 0.18 2.12 6.70 -39.01 -0.26 1.86 16 19 C -0.23 -2.32 9.01 -39.50 -0.36 -2.68 16 20 C -0.02 -0.16 9.61 -39.20 -0.38 -0.54 16 21 C -0.18 -1.96 5.87 -104.97 -0.62 -2.58 16 22 C 0.51 5.82 7.89 34.49 0.27 6.09 16 23 O -0.51 -6.90 16.13 -19.27 -0.31 -7.22 16 24 O -0.36 -3.39 9.81 -40.63 -0.40 -3.79 16 25 C 0.04 0.24 10.56 101.05 1.07 1.31 16 26 C -0.01 -0.13 9.58 -39.21 -0.38 -0.51 16 27 C -0.17 -1.86 9.97 -39.50 -0.39 -2.25 16 28 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.09 2.32 6.38 -51.93 -0.33 1.98 16 31 H 0.02 0.32 7.44 -51.93 -0.39 -0.07 16 32 H 0.07 1.88 6.15 -51.93 -0.32 1.56 16 33 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 34 H 0.05 0.94 8.07 -51.93 -0.42 0.52 16 35 H 0.05 0.73 8.04 -51.93 -0.42 0.31 16 36 H 0.36 4.70 9.05 45.56 0.41 5.11 16 37 H 0.07 0.81 7.66 -51.93 -0.40 0.41 16 38 H 0.06 0.66 7.64 -51.93 -0.40 0.27 16 39 H 0.14 1.18 6.28 -52.48 -0.33 0.85 16 40 H 0.14 1.06 7.60 -52.49 -0.40 0.66 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.10 0.36 8.14 -51.92 -0.42 -0.06 16 44 H 0.14 1.35 7.64 -52.49 -0.40 0.94 16 45 H 0.14 1.41 8.06 -52.48 -0.42 0.99 16 LS Contribution 378.38 15.07 5.70 5.70 Total: -1.00 -31.36 378.38 -7.49 -38.85 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -5.90 Total: 3.14 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -0.88 Total: -1.26 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.08 Total: -37.45 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -1.45 Total: -25.06 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.04 Total: 16.08 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.36 -7.49 -38.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121000225.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.936 kcal (2) G-P(sol) polarization free energy of solvation -31.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds