Wall clock time and date at job start Tue Mar 31 2020 13:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46507 * 109.47158 * 2 1 4 4 C 1.36933 * 120.00147 * 96.12843 * 3 2 1 5 5 H 1.08000 * 120.00019 * 172.48839 * 4 3 2 6 6 C 1.38812 * 120.00084 * 352.49711 * 4 3 2 7 7 N 1.31618 * 120.00057 * 324.25683 * 6 4 3 8 8 Si 1.86797 * 120.00121 * 144.25809 * 6 4 3 9 9 H 1.48503 * 109.47443 * 94.98223 * 8 6 4 10 10 H 1.48502 * 109.47417 * 214.98482 * 8 6 4 11 11 H 1.48501 * 109.47130 * 334.98078 * 8 6 4 12 12 C 1.46495 * 119.99644 * 276.13493 * 3 2 1 13 13 C 1.52998 * 109.47316 * 265.98041 * 12 3 2 14 14 H 1.09007 * 109.47041 * 306.72200 * 13 12 3 15 15 O 1.42901 * 109.47040 * 66.71945 * 13 12 3 16 16 C 1.53001 * 109.47394 * 186.72252 * 13 12 3 17 17 O 1.42898 * 109.46921 * 175.00096 * 16 13 12 18 18 C 1.35704 * 116.99804 * 179.97438 * 17 16 13 19 19 C 1.39011 * 119.90785 * 359.72993 * 18 17 16 20 20 C 1.37677 * 120.09558 * 179.72234 * 19 18 17 21 21 C 1.39795 * 119.90146 * 0.54135 * 20 19 18 22 22 C 1.47471 * 120.08986 * 179.70195 * 21 20 19 23 23 O 1.21507 * 120.00030 * 180.02562 * 22 21 20 24 24 O 1.34749 * 120.00179 * 0.02568 * 22 21 20 25 25 C 1.45192 * 116.99990 * 179.97438 * 24 22 21 26 26 C 1.39789 * 119.81608 * 359.73260 * 21 20 19 27 27 C 1.37672 * 119.90573 * 359.97438 * 26 21 20 28 28 H 1.09000 * 109.47351 * 66.24495 * 1 2 3 29 29 H 1.08997 * 109.46879 * 186.24403 * 1 2 3 30 30 H 1.08999 * 109.47099 * 306.24426 * 1 2 3 31 31 H 1.08994 * 109.47429 * 239.99716 * 2 1 3 32 32 H 1.08999 * 109.47030 * 119.99429 * 2 1 3 33 33 H 0.96996 * 120.00221 * 180.02562 * 7 6 4 34 34 H 1.09002 * 109.47045 * 145.97853 * 12 3 2 35 35 H 1.08998 * 109.47479 * 25.98235 * 12 3 2 36 36 H 0.96699 * 114.00082 * 60.00470 * 15 13 12 37 37 H 1.09001 * 109.47097 * 54.99903 * 16 13 12 38 38 H 1.09001 * 109.46729 * 294.99927 * 16 13 12 39 39 H 1.08004 * 119.94999 * 359.97438 * 19 18 17 40 40 H 1.07995 * 120.04836 * 180.25096 * 20 19 18 41 41 H 1.09006 * 109.47520 * 300.00085 * 25 24 22 42 42 H 1.09004 * 109.47110 * 60.00152 * 25 24 22 43 43 H 1.09007 * 109.47344 * 180.02562 * 25 24 22 44 44 H 1.07999 * 120.04813 * 179.97438 * 26 21 20 45 45 H 1.08007 * 119.95478 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3660 1.9846 1.1791 5 1 2.8387 2.9556 1.1700 6 6 2.1109 1.3481 2.3860 7 7 1.0226 0.6221 2.5301 8 14 3.3123 1.5220 3.8058 9 1 2.8681 2.6227 4.6982 10 1 3.3595 0.2513 4.5729 11 1 4.6646 1.8302 3.2751 12 6 2.1347 2.1170 -1.2615 13 6 3.5583 1.9770 -1.8042 14 1 4.2713 2.2720 -1.0342 15 8 3.7946 0.6177 -2.1765 16 6 3.7282 2.8782 -3.0289 17 8 5.0882 2.8368 -3.4657 18 6 5.4100 3.5863 -4.5502 19 6 4.4317 4.3431 -5.1847 20 6 4.7551 5.1094 -6.2819 21 6 6.0671 5.1169 -6.7644 22 6 6.4167 5.9310 -7.9433 23 8 7.5575 5.9360 -8.3616 24 8 5.4710 6.6695 -8.5565 25 6 5.8869 7.4466 -9.7104 26 6 7.0466 4.3500 -6.1267 27 6 6.7159 3.5912 -5.0266 28 1 -0.3634 0.4140 -0.9406 29 1 -0.3633 -1.0216 0.1118 30 1 -0.3633 0.6076 0.8288 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 0.8442 0.1776 3.3735 34 1 1.9133 3.1703 -1.0895 35 1 1.4283 1.7109 -1.9854 36 1 3.1951 0.2871 -2.8595 37 1 3.4619 3.9021 -2.7663 38 1 3.0782 2.5279 -3.8307 39 1 3.4173 4.3330 -4.8141 40 1 3.9953 5.7001 -6.7718 41 1 6.6624 8.1524 -9.4128 42 1 6.2789 6.7778 -10.4767 43 1 5.0316 7.9933 -10.1077 44 1 8.0613 4.3527 -6.4966 45 1 7.4720 2.9981 -4.5335 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121000225.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:48 Heat of formation + Delta-G solvation = -137.109679 kcal Electronic energy + Delta-G solvation = -26637.547390 eV Core-core repulsion = 22621.081523 eV Total energy + Delta-G solvation = -4016.465867 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.71498 -40.97947 -39.19030 -38.14670 -37.41700 -36.75854 -33.37889 -32.54304 -31.99851 -31.55819 -30.25857 -28.52355 -27.28041 -25.26775 -24.59039 -23.91696 -22.73506 -21.94897 -21.79425 -19.44236 -18.87489 -18.61740 -18.14521 -17.47905 -17.42178 -17.31500 -16.69941 -16.31766 -15.83397 -15.80294 -15.54862 -15.26670 -14.99204 -14.74670 -14.47324 -14.41784 -14.15075 -13.79322 -13.69958 -13.50774 -13.37477 -13.07220 -12.95923 -12.68633 -12.49027 -12.41860 -12.16307 -11.98833 -11.93500 -11.82175 -11.70601 -11.67782 -11.62355 -11.32917 -10.98500 -10.25809 -10.17262 -9.39044 -8.81705 -7.89226 -5.04334 -0.33124 0.27245 1.43721 1.44928 1.51716 1.59529 1.69463 2.04594 2.56083 2.69771 3.20490 3.56991 3.62630 3.70412 3.75477 3.83237 4.03500 4.10301 4.13476 4.31142 4.33497 4.34237 4.40691 4.45036 4.52889 4.59684 4.71326 4.74224 4.94799 4.97329 4.99133 5.06978 5.16943 5.19968 5.23254 5.27121 5.32583 5.34157 5.56249 5.63947 5.76020 6.16240 6.30735 6.34123 6.65664 7.00982 7.20690 7.95448 8.35580 9.14957 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.024745 B = 0.002121 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.291746 B =13199.219110 C =13584.467703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.174 3.826 3 N -0.601 5.601 4 C -0.267 4.267 5 H 0.071 0.929 6 C -0.036 4.036 7 N -0.897 5.897 8 Si 0.926 3.074 9 H -0.290 1.290 10 H -0.297 1.297 11 H -0.283 1.283 12 C 0.128 3.872 13 C 0.097 3.903 14 H 0.072 0.928 15 O -0.566 6.566 16 C 0.032 3.968 17 O -0.317 6.317 18 C 0.162 3.838 19 C -0.224 4.224 20 C -0.010 4.010 21 C -0.192 4.192 22 C 0.516 3.484 23 O -0.543 6.543 24 O -0.358 6.358 25 C 0.029 3.971 26 C -0.015 4.015 27 C -0.176 4.176 28 H 0.034 0.966 29 H 0.033 0.967 30 H 0.056 0.944 31 H 0.038 0.962 32 H 0.033 0.967 33 H 0.247 0.753 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.379 0.621 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.160 0.840 40 H 0.162 0.838 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.135 0.865 44 H 0.146 0.854 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.536 10.014 -23.369 25.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.049 3.951 3 N -0.322 5.322 4 C -0.397 4.397 5 H 0.089 0.911 6 C -0.233 4.233 7 N -0.542 5.542 8 Si 0.755 3.245 9 H -0.217 1.217 10 H -0.223 1.223 11 H -0.208 1.208 12 C 0.000 4.000 13 C 0.035 3.965 14 H 0.090 0.910 15 O -0.372 6.372 16 C -0.043 4.043 17 O -0.230 6.230 18 C 0.115 3.885 19 C -0.243 4.243 20 C -0.028 4.028 21 C -0.194 4.194 22 C 0.363 3.637 23 O -0.435 6.435 24 O -0.274 6.274 25 C -0.064 4.064 26 C -0.033 4.033 27 C -0.195 4.195 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.227 0.773 37 H 0.107 0.893 38 H 0.113 0.887 39 H 0.177 0.823 40 H 0.180 0.820 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.153 0.847 44 H 0.164 0.836 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 5.352 9.876 -22.804 25.421 hybrid contribution 0.250 0.054 0.704 0.749 sum 5.602 9.930 -22.100 24.868 Atomic orbital electron populations 1.22104 0.98552 0.99494 0.99911 1.20511 0.92632 0.84465 0.97541 1.44131 1.75557 1.10708 1.01777 1.19311 1.32466 1.03189 0.84688 0.91093 1.25108 0.98018 1.01444 0.98773 1.70393 1.21834 1.37066 1.24903 0.85902 0.81490 0.76388 0.80725 1.21705 1.22313 1.20845 1.21388 0.93422 0.97002 0.88152 1.22681 0.99543 0.80971 0.93326 0.90982 1.86636 1.61153 1.27637 1.61792 1.23814 0.80352 1.02198 0.97939 1.86166 1.31215 1.63089 1.42496 1.19722 0.94305 0.88746 0.85773 1.21530 1.00762 1.02139 0.99823 1.21443 0.94820 0.93734 0.92784 1.19064 0.96429 1.05437 0.98429 1.21252 0.82737 0.77106 0.82580 1.90815 1.22421 1.64447 1.65802 1.86532 1.40456 1.56276 1.44107 1.23585 1.03579 0.94585 0.84639 1.21096 0.99465 0.90894 0.91872 1.20534 0.94944 1.04716 0.99293 0.94741 0.94800 0.92539 0.94392 0.94895 0.94362 0.92164 0.90962 0.77268 0.89285 0.88719 0.82272 0.82037 0.91963 0.91882 0.84739 0.83582 0.83732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.04 9.70 71.98 0.70 -5.34 16 2 C 0.17 7.88 5.53 86.38 0.48 8.36 16 3 N -0.60 -27.37 2.51 -702.01 -1.76 -29.13 16 4 C -0.27 -13.97 9.61 84.03 0.81 -13.16 16 5 H 0.07 3.64 8.03 -2.91 -0.02 3.62 16 6 C -0.04 -1.98 4.57 84.86 0.39 -1.59 16 7 N -0.90 -50.17 9.34 21.65 0.20 -49.97 16 8 Si 0.93 44.37 29.67 68.60 2.04 46.40 16 9 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 10 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 11 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 12 C 0.13 4.28 5.33 86.38 0.46 4.74 16 13 C 0.10 2.98 3.47 30.59 0.11 3.09 16 14 H 0.07 2.75 8.14 -2.38 -0.02 2.73 16 15 O -0.57 -18.23 12.55 -144.34 -1.81 -20.04 16 16 C 0.03 0.71 4.37 71.98 0.31 1.02 16 17 O -0.32 -8.17 10.09 -85.60 -0.86 -9.04 16 18 C 0.16 3.54 6.70 22.64 0.15 3.69 16 19 C -0.22 -3.85 9.01 22.32 0.20 -3.65 16 20 C -0.01 -0.16 9.61 22.51 0.22 0.06 16 21 C -0.19 -3.82 5.87 -20.09 -0.12 -3.94 16 22 C 0.52 11.00 7.89 70.26 0.55 11.55 16 23 O -0.54 -14.28 16.13 19.81 0.32 -13.96 16 24 O -0.36 -6.04 9.81 -56.60 -0.56 -6.60 16 25 C 0.03 0.31 10.56 113.37 1.20 1.51 16 26 C -0.02 -0.30 9.58 22.51 0.22 -0.09 16 27 C -0.18 -3.71 9.97 22.32 0.22 -3.49 16 28 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.06 2.84 6.38 -2.39 -0.02 2.83 16 31 H 0.04 1.52 7.44 -2.39 -0.02 1.51 16 32 H 0.03 1.74 6.15 -2.39 -0.01 1.72 16 33 H 0.25 13.58 8.31 -92.71 -0.77 12.81 16 34 H 0.06 1.95 8.07 -2.39 -0.02 1.93 16 35 H 0.07 2.04 8.04 -2.39 -0.02 2.02 16 36 H 0.38 8.79 9.05 -74.06 -0.67 8.12 16 37 H 0.09 1.66 7.66 -2.39 -0.02 1.64 16 38 H 0.09 1.51 7.64 -2.39 -0.02 1.50 16 39 H 0.16 2.02 6.28 -2.91 -0.02 2.00 16 40 H 0.16 1.86 7.60 -2.91 -0.02 1.84 16 41 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 42 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.13 0.55 8.14 -2.38 -0.02 0.53 16 44 H 0.15 2.73 7.64 -2.91 -0.02 2.71 16 45 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -68.62 378.38 3.79 -64.83 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 0.33 Total: 14.74 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: 5.89 Total: 2.76 kcal Atomic # 7 Polarization: -77.55 SS G_CDS: -1.56 Total: -79.10 kcal Atomic # 8 Polarization: -46.72 SS G_CDS: -2.91 Total: -49.63 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.04 Total: 46.40 kcal Total: -68.62 3.79 -64.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121000225.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.280 kcal (2) G-P(sol) polarization free energy of solvation -68.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds