Wall clock time and date at job start Tue Mar 31 2020 13:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34748 * 116.99848 * 2 1 4 4 O 1.21502 * 120.00290 * 0.02562 * 3 2 1 5 5 C 1.47467 * 119.99640 * 179.97438 * 3 2 1 6 6 C 1.39793 * 120.09276 * 179.97438 * 5 3 2 7 7 C 1.37681 * 119.91026 * 180.02562 * 6 5 3 8 8 C 1.39014 * 120.09048 * 0.02562 * 7 6 5 9 9 O 1.35692 * 119.90587 * 179.97438 * 8 7 6 10 10 C 1.42905 * 117.00127 * 179.97438 * 9 8 7 11 11 C 1.52997 * 109.47264 * 180.02562 * 10 9 8 12 12 H 1.08998 * 109.47192 * 54.99822 * 11 10 9 13 13 O 1.42906 * 109.47007 * 294.99658 * 11 10 9 14 14 C 1.53001 * 109.47242 * 175.00315 * 11 10 9 15 15 N 1.46894 * 109.47184 * 185.00015 * 14 11 10 16 16 C 1.46898 * 111.00175 * 66.04468 * 15 14 11 17 17 C 1.46904 * 111.00091 * 189.99727 * 15 14 11 18 18 C 1.50697 * 109.47371 * 169.99739 * 17 15 14 19 19 H 1.07998 * 119.99914 * 0.02562 * 18 17 15 20 20 C 1.37874 * 119.99986 * 179.97438 * 18 17 15 21 21 N 1.31506 * 120.00208 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99799 * 179.97438 * 20 18 17 23 23 H 1.48491 * 109.47237 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46637 * 120.00382 * 22 20 18 25 25 H 1.48496 * 109.47108 * 240.00136 * 22 20 18 26 26 C 1.39012 * 120.18585 * 0.26847 * 8 7 6 27 27 C 1.37681 * 120.09498 * 359.44797 * 26 8 7 28 28 H 1.09002 * 109.47488 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47763 * 300.00177 * 1 2 3 30 30 H 1.09007 * 109.47217 * 59.99943 * 1 2 3 31 31 H 1.08008 * 120.04492 * 0.02562 * 6 5 3 32 32 H 1.07998 * 119.95703 * 179.97438 * 7 6 5 33 33 H 1.09001 * 109.47103 * 300.00462 * 10 9 8 34 34 H 1.09004 * 109.47054 * 59.99966 * 10 9 8 35 35 H 0.96697 * 113.99941 * 300.00517 * 13 11 10 36 36 H 1.09005 * 109.46584 * 305.00085 * 14 11 10 37 37 H 1.09000 * 109.47396 * 64.99207 * 14 11 10 38 38 H 1.08996 * 109.47707 * 59.99871 * 16 15 14 39 39 H 1.09004 * 109.47170 * 180.02562 * 16 15 14 40 40 H 1.08999 * 109.47049 * 299.99449 * 16 15 14 41 41 H 1.09005 * 109.46974 * 290.00165 * 17 15 14 42 42 H 1.08999 * 109.47023 * 49.99934 * 17 15 14 43 43 H 0.97000 * 120.00125 * 179.97438 * 21 20 18 44 44 H 1.07996 * 119.95495 * 179.72471 * 26 8 7 45 45 H 1.08004 * 120.05122 * 180.25004 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4020 2.2196 0.0005 5 6 3.5363 1.2778 0.0006 6 6 4.1731 2.5223 0.0000 7 6 5.5482 2.5899 0.0000 8 6 6.3034 1.4228 0.0000 9 8 7.6585 1.4938 -0.0005 10 6 8.3730 0.2562 0.0001 11 6 9.8772 0.5358 0.0000 12 1 10.1267 1.1821 0.8415 13 8 10.2416 1.1820 -1.2214 14 6 10.6413 -0.7838 0.1263 15 7 12.0790 -0.5076 0.2466 16 6 12.3775 0.1908 1.5041 17 6 12.8640 -1.7440 0.1320 18 6 14.3267 -1.4012 0.0132 19 1 14.6417 -0.3682 0.0224 20 6 15.2628 -2.4064 -0.1062 21 7 14.8793 -3.6642 -0.1168 22 14 17.0758 -1.9814 -0.2542 23 1 17.2431 -0.5064 -0.2169 24 1 17.8212 -2.5924 0.8755 25 1 17.6043 -2.5076 -1.5382 26 6 5.6743 0.1832 -0.0056 27 6 4.2996 0.1066 0.0003 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3635 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 3.5870 3.4295 -0.0004 32 1 6.0409 3.5509 -0.0008 33 1 8.1100 -0.3148 0.8905 34 1 8.1094 -0.3160 -0.8894 35 1 10.0477 0.6630 -2.0139 36 1 10.2986 -1.3186 1.0122 37 1 10.4613 -1.3940 -0.7587 38 1 12.0690 -0.4289 2.3460 39 1 13.4485 0.3834 1.5673 40 1 11.8365 1.1366 1.5316 41 1 12.7056 -2.3584 1.0183 42 1 12.5469 -2.2949 -0.7534 43 1 15.5379 -4.3714 -0.2012 44 1 6.2647 -0.7211 -0.0101 45 1 3.8116 -0.8569 0.0000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122783829.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:55 Heat of formation + Delta-G solvation = -139.294669 kcal Electronic energy + Delta-G solvation = -26072.469805 eV Core-core repulsion = 22055.909191 eV Total energy + Delta-G solvation = -4016.560615 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.99516 -40.24692 -38.35781 -37.29542 -36.64561 -35.48878 -32.59770 -31.79780 -31.09814 -30.25235 -28.04694 -27.32950 -26.56931 -24.51638 -23.87924 -22.96452 -21.53690 -21.05987 -20.34568 -18.69810 -18.07981 -17.45590 -16.74097 -16.70330 -16.63343 -16.31369 -15.48583 -15.19221 -15.03762 -14.82132 -14.43840 -14.33158 -13.88122 -13.83275 -13.70144 -13.51197 -13.38369 -12.89483 -12.75451 -12.52897 -12.41177 -11.98085 -11.50021 -11.44151 -11.28068 -11.19053 -11.13995 -10.97246 -10.89784 -10.83326 -10.70555 -10.36847 -10.09961 -9.77600 -9.51189 -9.20740 -8.67284 -8.48510 -7.30996 -6.07411 -4.08497 0.39077 0.93083 2.19803 2.32748 2.75472 3.28993 3.36602 3.38962 3.42158 4.27876 4.36301 4.39961 4.44519 4.46329 4.59768 4.70677 4.76367 4.78504 4.83941 4.94019 5.05617 5.10283 5.13808 5.26038 5.30501 5.31623 5.46072 5.57531 5.65993 5.86247 5.88357 5.88621 6.03691 6.07111 6.15235 6.23618 6.26620 6.70612 7.00262 7.18551 7.24362 7.38904 7.74115 7.84931 8.01447 8.11191 8.47367 8.99690 9.56144 11.03594 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.034995 B = 0.001767 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.927870 B =15839.273848 C =16376.038852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.357 6.357 3 C 0.514 3.486 4 O -0.513 6.513 5 C -0.179 4.179 6 C -0.012 4.012 7 C -0.166 4.166 8 C 0.176 3.824 9 O -0.294 6.294 10 C 0.023 3.977 11 C 0.115 3.885 12 H 0.108 0.892 13 O -0.537 6.537 14 C 0.028 3.972 15 N -0.529 5.529 16 C 0.034 3.966 17 C 0.192 3.808 18 C -0.506 4.506 19 H 0.065 0.935 20 C 0.054 3.946 21 N -0.900 5.900 22 Si 0.899 3.101 23 H -0.271 1.271 24 H -0.285 1.285 25 H -0.284 1.284 26 C -0.228 4.228 27 C -0.016 4.016 28 H 0.102 0.898 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.371 0.629 36 H 0.033 0.967 37 H 0.075 0.925 38 H 0.010 0.990 39 H 0.077 0.923 40 H 0.048 0.952 41 H -0.009 1.009 42 H 0.029 0.971 43 H 0.261 0.739 44 H 0.139 0.861 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.172 6.649 0.818 27.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.274 6.274 3 C 0.360 3.640 4 O -0.402 6.402 5 C -0.180 4.180 6 C -0.031 4.031 7 C -0.185 4.185 8 C 0.128 3.872 9 O -0.206 6.206 10 C -0.053 4.053 11 C 0.055 3.945 12 H 0.125 0.875 13 O -0.341 6.341 14 C -0.102 4.102 15 N -0.253 5.253 16 C -0.115 4.115 17 C 0.068 3.932 18 C -0.545 4.545 19 H 0.083 0.917 20 C -0.147 4.147 21 N -0.540 5.540 22 Si 0.727 3.273 23 H -0.196 1.196 24 H -0.211 1.211 25 H -0.210 1.210 26 C -0.246 4.246 27 C -0.035 4.035 28 H 0.121 0.879 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.161 0.839 32 H 0.161 0.839 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.217 0.783 36 H 0.051 0.949 37 H 0.093 0.907 38 H 0.029 0.971 39 H 0.096 0.904 40 H 0.066 0.934 41 H 0.009 0.991 42 H 0.047 0.953 43 H 0.070 0.930 44 H 0.156 0.844 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -25.843 7.686 0.827 26.974 hybrid contribution 0.263 -1.292 0.280 1.347 sum -25.580 6.395 1.107 26.391 Atomic orbital electron populations 1.23284 0.75913 1.03810 1.02661 1.86546 1.23620 1.32764 1.84456 1.21112 0.89072 0.81364 0.72432 1.90834 1.66869 1.36001 1.46530 1.18929 0.88927 0.94958 1.15219 1.21041 0.93392 0.96878 0.91744 1.20420 0.92520 0.97579 1.07980 1.19496 0.83261 0.93982 0.90451 1.86164 1.14576 1.33315 1.86513 1.23875 0.94143 0.84823 1.02468 1.21988 0.87257 0.95698 0.89561 0.87456 1.86655 1.86217 1.46494 1.14735 1.22625 0.91784 0.94658 1.01103 1.62009 1.02029 1.26999 1.34252 1.22294 1.02780 0.96779 0.89634 1.19768 0.92820 0.84699 0.95950 1.21196 0.90598 0.93331 1.49371 0.91660 1.24993 0.99357 0.94900 0.95431 1.69959 1.34116 0.98961 1.50924 0.86422 0.84705 0.78634 0.77567 1.19582 1.21132 1.20989 1.21322 0.95597 0.97224 1.10475 1.21236 0.92924 0.98063 0.91253 0.87925 0.91801 0.91800 0.83871 0.83917 0.90753 0.91090 0.78282 0.94944 0.90705 0.97120 0.90424 0.93375 0.99144 0.95258 0.92964 0.84351 0.84186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.57 101.05 1.07 1.28 16 2 O -0.36 -3.15 9.81 -40.62 -0.40 -3.54 16 3 C 0.51 5.39 7.89 34.49 0.27 5.66 16 4 O -0.51 -6.47 16.13 -19.27 -0.31 -6.79 16 5 C -0.18 -1.74 5.87 -104.97 -0.62 -2.35 16 6 C -0.01 -0.11 9.58 -39.20 -0.38 -0.49 16 7 C -0.17 -1.57 9.97 -39.50 -0.39 -1.97 16 8 C 0.18 1.80 6.70 -39.01 -0.26 1.54 16 9 O -0.29 -3.41 10.09 -23.62 -0.24 -3.65 16 10 C 0.02 0.23 4.37 37.16 0.16 0.40 16 11 C 0.12 1.54 3.20 -26.73 -0.09 1.45 16 12 H 0.11 1.52 6.34 -51.93 -0.33 1.20 16 13 O -0.54 -7.97 13.25 -40.07 -0.53 -8.51 16 14 C 0.03 0.44 4.59 -3.83 -0.02 0.42 16 15 N -0.53 -10.91 4.70 -244.37 -1.15 -12.06 16 16 C 0.03 0.64 9.14 60.06 0.55 1.19 16 17 C 0.19 4.86 4.72 -4.98 -0.02 4.84 16 18 C -0.51 -14.03 8.46 -34.44 -0.29 -14.32 16 19 H 0.07 1.81 7.12 -52.49 -0.37 1.44 16 20 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 21 N -0.90 -26.30 13.29 55.43 0.74 -25.56 16 22 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 23 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 C -0.23 -2.01 9.01 -39.50 -0.36 -2.37 16 27 C -0.02 -0.14 9.61 -39.20 -0.38 -0.52 16 28 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.37 8.14 -51.92 -0.42 -0.06 16 31 H 0.14 1.19 7.64 -52.48 -0.40 0.79 16 32 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 33 H 0.07 0.66 7.66 -51.93 -0.40 0.26 16 34 H 0.07 0.61 7.64 -51.93 -0.40 0.22 16 35 H 0.37 4.26 9.04 45.56 0.41 4.67 16 36 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 37 H 0.07 1.13 7.93 -51.93 -0.41 0.72 16 38 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 39 H 0.08 1.60 6.76 -51.93 -0.35 1.25 16 40 H 0.05 0.79 6.37 -51.93 -0.33 0.46 16 41 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 42 H 0.03 0.78 7.93 -51.93 -0.41 0.37 16 43 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 44 H 0.14 1.01 6.27 -52.49 -0.33 0.68 16 45 H 0.14 0.95 7.60 -52.48 -0.40 0.55 16 LS Contribution 380.76 15.07 5.74 5.74 Total: -1.00 -33.41 380.76 -7.83 -41.24 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -5.81 Total: 0.53 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -0.84 Total: -3.82 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: -0.41 Total: -37.62 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -1.48 Total: -22.48 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.41 -7.83 -41.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122783829.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.050 kcal (2) G-P(sol) polarization free energy of solvation -33.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds