Wall clock time and date at job start Tue Mar 31 2020 14:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81399 * 102.99862 * 2 1 4 4 C 1.52996 * 109.47039 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46946 * 180.02562 * 4 3 2 6 6 H 1.09003 * 109.47528 * 304.99959 * 5 4 3 7 7 N 1.46900 * 109.47571 * 65.00314 * 5 4 3 8 8 C 1.50702 * 109.47121 * 185.00076 * 5 4 3 9 9 O 1.21283 * 120.00262 * 260.00193 * 8 5 4 10 10 N 1.34777 * 119.99928 * 79.72099 * 8 5 4 11 11 C 1.46506 * 120.00264 * 0.28128 * 10 8 5 12 12 C 1.50699 * 109.47106 * 89.99354 * 11 10 8 13 13 H 1.07999 * 120.00463 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99855 * 180.02562 * 12 11 10 15 15 N 1.31506 * 119.99824 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 119.99715 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47172 * 90.00201 * 16 14 12 18 18 H 1.48505 * 109.46881 * 209.99904 * 16 14 12 19 19 H 1.48497 * 109.47562 * 329.99812 * 16 14 12 20 20 C 1.46499 * 120.00199 * 180.27479 * 10 8 5 21 21 C 1.50697 * 109.46949 * 90.00203 * 20 10 8 22 22 C 1.38680 * 120.42160 * 269.72067 * 21 20 10 23 23 C 1.38623 * 118.42241 * 179.78241 * 22 21 20 24 24 C 1.38233 * 119.16032 * 0.51432 * 23 22 21 25 25 N 1.31854 * 120.76370 * 359.72928 * 24 23 22 26 26 C 1.31888 * 121.72386 * 359.97438 * 25 24 23 27 27 H 1.09004 * 109.47045 * 299.99627 * 1 2 3 28 28 H 1.08997 * 109.47228 * 59.99549 * 1 2 3 29 29 H 1.09001 * 109.46878 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47236 * 60.00053 * 3 2 1 31 31 H 1.09002 * 109.47538 * 300.00635 * 3 2 1 32 32 H 1.08996 * 109.47173 * 60.00432 * 4 3 2 33 33 H 1.08998 * 109.47028 * 300.00018 * 4 3 2 34 34 H 1.00907 * 110.99710 * 296.04721 * 7 5 4 35 35 H 1.00898 * 110.99811 * 59.99595 * 7 5 4 36 36 H 1.08994 * 109.46996 * 209.99677 * 11 10 8 37 37 H 1.09001 * 109.46578 * 329.99540 * 11 10 8 38 38 H 0.97009 * 119.99797 * 179.97438 * 15 14 12 39 39 H 1.09001 * 109.47567 * 210.00057 * 20 10 8 40 40 H 1.09005 * 109.47076 * 330.00563 * 20 10 8 41 41 H 1.08001 * 120.78897 * 0.02614 * 22 21 20 42 42 H 1.08000 * 120.41749 * 180.22294 * 23 22 21 43 43 H 1.07994 * 119.61267 * 179.74648 * 24 23 22 44 44 H 1.08001 * 119.61449 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9400 -0.0006 5 6 4.0864 3.4308 0.0000 6 1 3.5934 3.9179 -0.8413 7 7 3.6269 4.0389 1.2558 8 6 5.5785 3.6020 -0.1245 9 8 6.2469 3.8311 0.8612 10 7 6.1708 3.4948 -1.3304 11 6 5.3634 3.2179 -2.5211 12 6 4.9151 4.5180 -3.1375 13 1 5.2031 5.4566 -2.6876 14 6 4.1372 4.5092 -4.2758 15 7 3.7464 5.6437 -4.8140 16 14 3.6384 2.8857 -5.0536 17 1 2.3506 2.4321 -4.4698 18 1 3.4811 3.0666 -6.5192 19 1 4.6871 1.8678 -4.7903 20 6 7.6220 3.6552 -1.4506 21 6 8.2910 2.3152 -1.2836 22 6 8.6851 1.8788 -0.0276 23 6 9.2926 0.6373 0.0788 24 6 9.4938 -0.1143 -1.0637 25 7 9.1106 0.3349 -2.2427 26 6 8.5244 1.5082 -2.3807 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8031 2.2371 0.8900 31 1 1.8030 2.2372 -0.8899 32 1 4.1608 1.4705 -0.8909 33 1 4.1616 1.4703 0.8891 34 1 2.6217 3.9944 1.3325 35 1 4.0699 3.6043 2.0513 36 1 5.9600 2.6602 -3.2429 37 1 4.4903 2.6293 -2.2392 38 1 3.1994 5.6375 -5.6151 39 1 7.8626 4.0615 -2.4330 40 1 7.9773 4.3374 -0.6782 41 1 8.5190 2.4898 0.8473 42 1 9.6091 0.2642 1.0417 43 1 9.9702 -1.0807 -0.9897 44 1 8.2240 1.8425 -3.3627 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130806757.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:15 Heat of formation + Delta-G solvation = -1.898601 kcal Electronic energy + Delta-G solvation = -25799.764741 eV Core-core repulsion = 22264.207688 eV Total energy + Delta-G solvation = -3535.557052 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.21855 -39.32639 -35.93434 -35.34685 -33.02124 -32.21430 -31.43374 -30.82996 -29.11207 -28.23484 -27.21084 -25.18447 -23.44447 -22.73757 -22.19984 -21.20189 -18.58459 -17.29475 -17.15604 -16.80997 -16.22273 -16.04945 -15.72410 -15.29719 -15.10101 -14.76296 -14.62148 -14.15854 -14.04050 -13.74843 -13.58552 -13.48094 -13.08666 -12.96339 -12.77079 -12.62674 -12.56981 -12.20636 -11.96697 -11.71077 -11.50047 -11.30533 -11.13658 -10.91130 -10.71027 -10.35411 -10.11378 -9.74793 -9.65402 -9.32891 -9.28862 -8.85313 -8.78100 -8.47621 -7.90377 -7.79169 -6.27917 -4.30625 1.21359 1.44195 1.53544 2.46856 3.12172 3.18788 3.21699 3.24543 3.59744 4.08047 4.20519 4.58074 4.69822 4.79274 4.87129 4.95186 4.96226 4.98425 5.01280 5.06940 5.15388 5.19934 5.22828 5.33750 5.47600 5.53239 5.58513 5.64691 5.81337 5.95544 5.97086 6.10752 6.17181 6.28022 6.33453 6.51336 6.57438 6.84873 7.12758 7.27734 7.35820 7.63452 7.99585 8.10141 8.31555 8.74537 8.82782 9.30708 10.84247 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.007787 B = 0.005624 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3595.072890 B = 4977.303644 C = 6392.828040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.267 6.267 3 C -0.082 4.082 4 C -0.133 4.133 5 C 0.080 3.920 6 H 0.126 0.874 7 N -0.824 5.824 8 C 0.533 3.467 9 O -0.557 6.557 10 N -0.584 5.584 11 C 0.204 3.796 12 C -0.544 4.544 13 H 0.081 0.919 14 C 0.080 3.920 15 N -0.886 5.886 16 Si 0.863 3.137 17 H -0.273 1.273 18 H -0.282 1.282 19 H -0.262 1.262 20 C 0.161 3.839 21 C -0.146 4.146 22 C -0.055 4.055 23 C -0.180 4.180 24 C 0.090 3.910 25 N -0.489 5.489 26 C 0.111 3.889 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.340 0.660 35 H 0.345 0.655 36 H 0.034 0.966 37 H 0.032 0.968 38 H 0.267 0.733 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.138 0.862 42 H 0.130 0.870 43 H 0.150 0.850 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.225 -10.378 9.373 13.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.041 6.041 3 C -0.230 4.230 4 C -0.174 4.174 5 C -0.037 4.037 6 H 0.143 0.857 7 N -0.355 5.355 8 C 0.321 3.679 9 O -0.436 6.436 10 N -0.314 5.314 11 C 0.083 3.917 12 C -0.582 4.582 13 H 0.099 0.901 14 C -0.124 4.124 15 N -0.523 5.523 16 Si 0.690 3.310 17 H -0.198 1.198 18 H -0.207 1.207 19 H -0.186 1.186 20 C 0.037 3.963 21 C -0.149 4.149 22 C -0.082 4.082 23 C -0.200 4.200 24 C -0.067 4.067 25 N -0.198 5.198 26 C -0.046 4.046 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.118 0.882 30 H 0.099 0.901 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.154 0.846 35 H 0.159 0.841 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.077 0.923 39 H 0.113 0.887 40 H 0.106 0.894 41 H 0.156 0.844 42 H 0.148 0.852 43 H 0.167 0.833 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 1.574 -10.877 8.683 14.007 hybrid contribution -1.883 -0.240 0.256 1.915 sum -0.309 -11.118 8.939 14.269 Atomic orbital electron populations 1.23368 0.94312 1.06349 1.04990 1.86930 1.07239 1.11836 1.98086 1.23419 1.00199 0.94064 1.05366 1.22111 0.93074 0.97940 1.04321 1.21448 0.94191 0.92211 0.95841 0.85674 1.58514 1.10949 1.62681 1.03325 1.20119 0.89261 0.75825 0.82720 1.90566 1.65619 1.50079 1.37314 1.47874 1.06111 1.69195 1.08203 1.19944 0.90886 0.97716 0.83110 1.21363 1.33156 0.92652 1.11008 0.90083 1.24849 0.95221 0.96026 0.96335 1.69886 1.35638 1.25589 1.21235 0.87040 0.79925 0.84573 0.79490 1.19823 1.20739 1.18617 1.20162 0.80360 0.91833 1.03978 1.21447 0.99722 0.99447 0.94260 1.21678 0.93468 0.95285 0.97748 1.22119 1.01795 0.95979 1.00088 1.22702 0.96663 0.99332 0.88001 1.67701 1.10678 1.14544 1.26854 1.22792 0.93554 0.89229 0.99016 0.90567 0.90339 0.88216 0.90131 0.89113 0.89637 0.90890 0.84591 0.84137 0.94760 0.95010 0.92286 0.88749 0.89425 0.84383 0.85203 0.83252 0.82652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.13 10.76 101.05 1.09 -0.05 16 2 S -0.27 -3.42 22.38 -107.50 -2.41 -5.83 16 3 C -0.08 -1.04 5.71 37.16 0.21 -0.83 16 4 C -0.13 -1.95 4.51 -26.73 -0.12 -2.07 16 5 C 0.08 1.32 2.36 -68.86 -0.16 1.16 16 6 H 0.13 2.36 6.79 -51.93 -0.35 2.01 16 7 N -0.82 -12.14 8.94 -5.65 -0.05 -12.19 16 8 C 0.53 10.16 6.92 -10.98 -0.08 10.09 16 9 O -0.56 -11.29 15.49 5.55 0.09 -11.21 16 10 N -0.58 -11.12 2.44 -176.43 -0.43 -11.55 16 11 C 0.20 4.25 3.80 -5.19 -0.02 4.23 16 12 C -0.54 -13.58 9.43 -34.44 -0.32 -13.90 16 13 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 14 C 0.08 2.07 5.47 -17.82 -0.10 1.98 16 15 N -0.89 -24.94 13.96 55.43 0.77 -24.16 16 16 Si 0.86 19.24 27.47 -169.99 -4.67 14.57 16 17 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.26 -5.58 6.54 56.52 0.37 -5.21 16 20 C 0.16 2.73 5.56 -5.20 -0.03 2.70 16 21 C -0.15 -2.28 5.48 -104.48 -0.57 -2.85 16 22 C -0.06 -0.80 9.86 -39.28 -0.39 -1.19 16 23 C -0.18 -2.26 10.11 -39.44 -0.40 -2.66 16 24 C 0.09 1.18 11.18 -17.54 -0.20 0.99 16 25 N -0.49 -7.64 10.36 -13.25 -0.14 -7.78 16 26 C 0.11 1.75 10.86 -17.55 -0.19 1.56 16 27 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.10 0.80 8.14 -51.92 -0.42 0.38 16 30 H 0.08 0.86 6.87 -51.92 -0.36 0.50 16 31 H 0.09 1.21 8.14 -51.92 -0.42 0.79 16 32 H 0.09 1.39 6.42 -51.93 -0.33 1.05 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.34 4.10 7.55 -39.29 -0.30 3.81 16 35 H 0.34 4.87 8.58 -39.29 -0.34 4.53 16 36 H 0.03 0.71 7.13 -51.93 -0.37 0.34 16 37 H 0.03 0.65 4.25 -51.93 -0.22 0.43 16 38 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 39 H 0.09 1.56 8.02 -51.93 -0.42 1.15 16 40 H 0.09 1.49 7.37 -51.93 -0.38 1.11 16 41 H 0.14 2.02 7.71 -52.49 -0.40 1.61 16 42 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 43 H 0.15 1.49 8.06 -52.49 -0.42 1.07 16 44 H 0.16 2.34 8.06 -52.49 -0.42 1.91 16 LS Contribution 375.75 15.07 5.66 5.66 Total: -1.00 -29.94 375.75 -8.89 -38.83 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: -6.44 Total: 14.50 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -1.28 Total: -0.84 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: 0.16 Total: -55.68 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.09 Total: -11.21 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -4.67 Total: 14.57 kcal Atomic # 16 Polarization: -3.42 SS G_CDS: -2.41 Total: -5.83 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.94 -8.89 -38.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130806757.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.928 kcal (2) G-P(sol) polarization free energy of solvation -29.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds