Wall clock time and date at job start Tue Mar 31 2020 13:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42901 * 109.46894 * 2 1 4 4 C 1.42903 * 113.99854 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.47413 * 329.99258 * 4 3 2 6 6 C 1.53004 * 109.47248 * 89.99765 * 4 3 2 7 7 C 1.50704 * 109.46791 * 209.99369 * 4 3 2 8 8 N 1.29025 * 124.91338 * 135.28095 * 7 4 3 9 9 C 1.31780 * 117.12417 * 180.22658 * 8 7 4 10 10 C 1.50705 * 122.75180 * 179.75222 * 9 8 7 11 11 N 1.46901 * 109.46921 * 274.73381 * 10 9 8 12 12 C 1.46897 * 111.00094 * 189.99819 * 11 10 9 13 13 C 1.50707 * 109.46918 * 71.91496 * 12 11 10 14 14 H 1.07997 * 119.99751 * 355.91177 * 13 12 11 15 15 C 1.37873 * 119.99881 * 175.90779 * 13 12 11 16 16 N 1.31509 * 120.00333 * 180.02562 * 15 13 12 17 17 Si 1.86807 * 119.99985 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.46980 * 90.00087 * 17 15 13 19 19 H 1.48500 * 109.46887 * 209.99811 * 17 15 13 20 20 H 1.48494 * 109.47374 * 330.00078 * 17 15 13 21 21 C 1.46906 * 110.99811 * 66.04355 * 11 10 9 22 22 C 1.53005 * 109.46847 * 199.89873 * 21 11 10 23 23 C 1.47199 * 109.47042 * 181.71186 * 22 21 11 24 24 N 6.47799 * 111.00535 * 92.65634 * 2 1 3 25 25 C 1.33635 * 114.50020 * 359.48311 * 9 8 7 26 26 S 1.70974 * 124.91831 * 314.97349 * 7 4 3 27 27 H 1.09007 * 109.46906 * 60.00954 * 1 2 3 28 28 H 1.08998 * 109.46792 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47671 * 300.00656 * 1 2 3 30 30 H 1.09000 * 109.47671 * 239.99344 * 2 1 3 31 31 H 1.09007 * 109.46906 * 119.99046 * 2 1 3 32 32 H 1.08992 * 109.47111 * 59.99764 * 6 4 3 33 33 H 1.08998 * 109.46661 * 179.97438 * 6 4 3 34 34 H 1.08996 * 109.46675 * 299.99812 * 6 4 3 35 35 H 1.09000 * 109.47089 * 154.73832 * 10 9 8 36 36 H 1.09004 * 109.47008 * 34.73022 * 10 9 8 37 37 H 1.08998 * 109.47162 * 191.91312 * 12 11 10 38 38 H 1.08996 * 109.47255 * 311.91984 * 12 11 10 39 39 H 0.96996 * 120.00957 * 179.97438 * 16 15 13 40 40 H 1.08996 * 109.47494 * 319.90022 * 21 11 10 41 41 H 1.08995 * 109.46773 * 79.90593 * 21 11 10 42 42 H 1.08999 * 109.47299 * 301.71459 * 22 21 11 43 43 H 1.09001 * 109.46733 * 61.71326 * 22 21 11 44 44 H 1.08001 * 126.03928 * 180.26985 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8632 0.6018 0.5148 6 6 3.9399 1.5002 -1.4417 7 6 3.8341 2.7267 0.7109 8 7 4.7845 2.8160 1.5788 9 6 5.0038 4.0020 2.1098 10 6 6.0769 4.2489 3.1387 11 7 5.5552 3.9344 4.4755 12 6 6.4833 4.3834 5.5219 13 6 6.4523 5.8877 5.6090 14 1 5.8582 6.4569 4.9094 15 6 7.1821 6.5370 6.5819 16 7 7.1547 7.8496 6.6584 17 14 8.2090 5.5522 7.7925 18 1 9.5758 5.3637 7.2436 19 1 8.2900 6.2835 9.0824 20 1 7.5773 4.2266 8.0138 21 6 5.2703 2.4990 4.6050 22 6 4.2988 2.2747 5.7656 23 6 4.0453 0.8331 5.9216 24 7 3.8521 -0.2803 6.0410 25 6 4.2002 4.9690 1.6570 26 16 3.1032 4.2546 0.4777 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 3.5076 2.3585 -1.9559 33 1 5.0264 1.5867 -1.4412 34 1 3.6482 0.5842 -1.9554 35 1 6.3797 5.2954 3.1039 36 1 6.9372 3.6143 2.9259 37 1 6.1844 3.9578 6.4797 38 1 7.4933 4.0545 5.2773 39 1 7.6679 8.3065 7.3430 40 1 4.8234 2.1324 3.6810 41 1 6.1980 1.9606 4.7986 42 1 4.7331 2.6688 6.6844 43 1 3.3601 2.7884 5.5579 44 1 4.2198 6.0054 1.9603 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132811358.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:47 Heat of formation + Delta-G solvation = 12.140583 kcal Electronic energy + Delta-G solvation = -24816.871345 eV Core-core repulsion = 21281.923077 eV Total energy + Delta-G solvation = -3534.948267 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.13196 -39.42378 -38.61570 -37.41033 -34.65414 -34.13265 -32.66057 -31.57367 -30.69804 -29.48861 -27.13093 -26.16059 -24.54863 -23.73037 -22.86290 -21.64730 -20.62459 -19.01805 -18.87554 -18.30474 -17.50149 -17.06285 -16.85625 -16.65346 -15.98879 -15.94282 -15.68556 -15.50250 -14.83251 -14.74919 -14.41010 -14.23515 -14.17005 -13.92612 -13.81635 -13.63382 -13.49046 -13.33876 -13.09675 -12.89229 -12.73463 -12.68600 -12.48844 -12.34562 -12.31223 -12.08879 -11.94282 -11.73044 -11.59620 -11.35591 -10.73628 -10.69269 -10.58850 -10.26709 -9.70405 -9.06602 -8.18150 -6.19885 -0.23638 0.46209 0.84584 1.42515 1.44637 1.52842 1.61910 1.75162 1.75540 2.37142 2.42302 2.87219 3.15706 3.29337 3.59686 3.85314 4.05142 4.07153 4.11894 4.16754 4.20798 4.23957 4.34440 4.46605 4.48964 4.59632 4.63154 4.72504 4.81446 4.84079 4.89454 4.93489 5.00723 5.03567 5.06203 5.09974 5.18787 5.25792 5.29170 5.63447 6.03070 6.11910 6.28164 6.52136 6.65620 6.79093 6.87559 7.43139 8.97886 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014148 B = 0.003509 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.611118 B = 7978.479399 C = 9314.619299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.052 3.948 3 O -0.394 6.394 4 C 0.166 3.834 5 H 0.088 0.912 6 C -0.162 4.162 7 C 0.027 3.973 8 N -0.478 5.478 9 C 0.066 3.934 10 C 0.142 3.858 11 N -0.525 5.525 12 C 0.165 3.835 13 C -0.504 4.504 14 H 0.047 0.953 15 C 0.013 3.987 16 N -0.948 5.948 17 Si 0.933 3.067 18 H -0.274 1.274 19 H -0.289 1.289 20 H -0.240 1.240 21 C 0.056 3.944 22 C -0.018 4.018 23 C 0.242 3.758 24 N -0.489 5.489 25 C -0.245 4.245 26 S 0.185 5.815 27 H 0.066 0.934 28 H 0.089 0.911 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.047 0.953 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.042 0.958 37 H 0.047 0.953 38 H -0.010 1.010 39 H 0.264 0.736 40 H 0.087 0.913 41 H 0.036 0.964 42 H 0.119 0.881 43 H 0.127 0.873 44 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.814 -13.577 -16.061 23.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.024 4.024 3 O -0.313 6.313 4 C 0.105 3.895 5 H 0.106 0.894 6 C -0.220 4.220 7 C -0.250 4.250 8 N -0.196 5.196 9 C -0.066 4.066 10 C 0.012 3.988 11 N -0.248 5.248 12 C 0.039 3.961 13 C -0.542 4.542 14 H 0.065 0.935 15 C -0.185 4.185 16 N -0.589 5.589 17 Si 0.758 3.242 18 H -0.200 1.200 19 H -0.215 1.215 20 H -0.164 1.164 21 C -0.074 4.074 22 C -0.059 4.059 23 C -0.075 4.075 24 N -0.167 5.167 25 C -0.385 4.385 26 S 0.440 5.560 27 H 0.085 0.915 28 H 0.108 0.892 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.008 0.992 39 H 0.073 0.927 40 H 0.105 0.895 41 H 0.055 0.945 42 H 0.137 0.863 43 H 0.145 0.855 44 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -11.141 -14.801 -16.231 24.630 hybrid contribution 2.348 0.306 1.397 2.750 sum -8.792 -14.495 -14.834 22.527 Atomic orbital electron populations 1.21763 0.92674 1.03403 1.02806 1.22750 0.96404 0.82169 1.01112 1.87904 1.19385 1.28789 1.95235 1.20293 0.82252 0.91219 0.95772 0.89407 1.22251 1.02016 1.04324 0.93427 1.27005 0.97314 1.00800 0.99896 1.66005 1.18186 1.25760 1.09601 1.20047 1.00075 0.87184 0.99279 1.20394 0.91450 1.01668 0.85276 1.61749 1.46594 1.14311 1.02191 1.20122 0.89710 0.94802 0.91478 1.21219 1.27003 0.91072 1.14944 0.93509 1.25697 0.97863 0.95524 0.99382 1.70028 1.43635 1.09317 1.35955 0.85925 0.79584 0.80202 0.78509 1.19992 1.21536 1.16369 1.22038 0.97670 0.89115 0.98551 1.19330 1.03451 0.81226 1.01865 1.29429 0.91490 0.95146 0.91444 1.81187 1.11007 1.13766 1.10746 1.27161 1.01252 1.05877 1.04249 1.83687 1.33597 1.01208 1.37484 0.91497 0.89180 0.92912 0.91119 0.93455 0.91306 0.90914 0.89293 0.89571 0.94000 0.93513 0.99220 0.92721 0.89468 0.94525 0.86295 0.85502 0.80014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 10.28 71.98 0.74 -1.13 16 2 C 0.05 0.76 6.47 71.98 0.47 1.23 16 3 O -0.39 -7.89 9.82 -148.98 -1.46 -9.36 16 4 C 0.17 3.31 3.24 29.85 0.10 3.40 16 5 H 0.09 1.74 7.79 -2.39 -0.02 1.72 16 6 C -0.16 -2.41 9.51 71.98 0.68 -1.72 16 7 C 0.03 0.69 6.34 88.52 0.56 1.26 16 8 N -0.48 -14.20 8.90 -179.40 -1.60 -15.80 16 9 C 0.07 2.07 5.64 41.52 0.23 2.30 16 10 C 0.14 5.02 5.25 85.56 0.45 5.47 16 11 N -0.52 -19.11 4.37 -905.34 -3.96 -23.07 16 12 C 0.17 6.97 3.64 85.56 0.31 7.28 16 13 C -0.50 -26.33 9.07 25.60 0.23 -26.09 16 14 H 0.05 2.72 7.68 -2.91 -0.02 2.70 16 15 C 0.01 0.69 5.47 84.65 0.46 1.15 16 16 N -0.95 -56.40 13.96 21.44 0.30 -56.10 16 17 Si 0.93 41.20 27.55 68.60 1.89 43.09 16 18 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 19 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 20 H -0.24 -9.53 6.43 99.48 0.64 -8.89 16 21 C 0.06 1.71 4.80 86.30 0.41 2.12 16 22 C -0.02 -0.48 5.84 28.79 0.17 -0.31 16 23 C 0.24 6.83 15.43 89.44 1.38 8.21 16 24 N -0.49 -15.87 18.54 20.01 0.37 -15.50 16 25 C -0.25 -7.02 11.11 66.77 0.74 -6.28 16 26 S 0.19 4.38 23.01 -56.49 -1.30 3.08 16 27 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 28 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.07 0.76 7.87 -2.39 -0.02 0.74 16 31 H 0.05 0.73 8.09 -2.38 -0.02 0.71 16 32 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16 34 H 0.09 0.95 7.87 -2.39 -0.02 0.93 16 35 H 0.09 3.36 6.98 -2.39 -0.02 3.35 16 36 H 0.04 1.45 8.12 -2.38 -0.02 1.43 16 37 H 0.05 1.88 5.30 -2.39 -0.01 1.87 16 38 H -0.01 -0.42 7.69 -2.39 -0.02 -0.44 16 39 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 40 H 0.09 2.71 5.64 -2.39 -0.01 2.69 16 41 H 0.04 1.11 8.00 -2.39 -0.02 1.09 16 42 H 0.12 3.03 6.72 -2.39 -0.02 3.02 16 43 H 0.13 3.05 8.14 -2.39 -0.02 3.03 16 44 H 0.18 5.06 8.06 -2.91 -0.02 5.03 16 Total: -1.00 -64.83 381.83 2.12 -62.72 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: 0.93 Total: 14.06 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: 6.94 Total: -3.12 kcal Atomic # 7 Polarization: -105.58 SS G_CDS: -4.88 Total: -110.46 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: -1.46 Total: -9.36 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 1.89 Total: 43.09 kcal Atomic # 16 Polarization: 4.38 SS G_CDS: -1.30 Total: 3.08 kcal Total: -64.83 2.12 -62.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132811358.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.859 kcal (2) G-P(sol) polarization free energy of solvation -64.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds