Wall clock time and date at job start Tue Mar 31 2020 13:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42904 * 109.46817 * 2 1 4 4 C 1.42904 * 113.99813 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.46897 * 29.99499 * 4 3 2 6 6 C 1.52997 * 109.46723 * 269.99602 * 4 3 2 7 7 C 1.50695 * 109.47013 * 149.99839 * 4 3 2 8 8 N 1.29030 * 124.91414 * 224.99460 * 7 4 3 9 9 C 1.31782 * 117.12491 * 179.97438 * 8 7 4 10 10 C 1.50697 * 122.74903 * 180.02562 * 9 8 7 11 11 N 1.46904 * 109.47150 * 275.00356 * 10 9 8 12 12 C 1.46900 * 111.00054 * 189.99775 * 11 10 9 13 13 C 1.50703 * 109.47193 * 169.06537 * 12 11 10 14 14 H 1.07995 * 119.99996 * 354.97680 * 13 12 11 15 15 C 1.37875 * 119.99732 * 174.97406 * 13 12 11 16 16 N 1.31513 * 120.00347 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99582 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.47197 * 60.00170 * 17 15 13 19 19 H 1.48504 * 109.47075 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47259 * 300.00175 * 17 15 13 21 21 C 1.46903 * 110.99874 * 66.04892 * 11 10 9 22 22 C 1.52995 * 109.47583 * 61.87589 * 21 11 10 23 23 C 1.47191 * 109.47146 * 179.65142 * 22 21 11 24 24 N 7.50500 * 168.29603 * 270.98122 * 2 1 3 25 25 C 1.33640 * 114.50176 * 0.02562 * 9 8 7 26 26 S 1.70973 * 124.92015 * 44.69508 * 7 4 3 27 27 H 1.08999 * 109.47126 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47637 * 300.00249 * 1 2 3 29 29 H 1.08998 * 109.47660 * 60.00366 * 1 2 3 30 30 H 1.08990 * 109.47310 * 239.99839 * 2 1 3 31 31 H 1.09002 * 109.46966 * 119.99484 * 2 1 3 32 32 H 1.09002 * 109.47594 * 59.99929 * 6 4 3 33 33 H 1.08999 * 109.46913 * 179.97438 * 6 4 3 34 34 H 1.09001 * 109.47470 * 300.00295 * 6 4 3 35 35 H 1.09000 * 109.47292 * 35.00593 * 10 9 8 36 36 H 1.08999 * 109.47107 * 155.00685 * 10 9 8 37 37 H 1.08996 * 109.47095 * 289.07281 * 12 11 10 38 38 H 1.09011 * 109.47022 * 49.07128 * 12 11 10 39 39 H 0.97006 * 119.99923 * 180.02562 * 16 15 13 40 40 H 1.08999 * 109.46546 * 181.88190 * 21 11 10 41 41 H 1.09000 * 109.46600 * 301.87348 * 21 11 10 42 42 H 1.09001 * 109.47204 * 299.65420 * 22 21 11 43 43 H 1.09005 * 109.46665 * 59.64710 * 22 21 11 44 44 H 1.07996 * 126.03807 * 179.97438 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.8631 0.6018 -0.5146 6 6 3.9397 1.5004 1.4417 7 6 3.8341 2.7265 -0.7110 8 7 4.7813 2.8147 -1.5827 9 6 5.0038 4.0017 -2.1102 10 6 6.0769 4.2483 -3.1391 11 7 7.3580 4.4904 -2.4622 12 6 8.3733 4.9661 -3.4112 13 6 9.5797 5.4562 -2.6526 14 1 9.5603 5.4939 -1.5735 15 6 10.7083 5.8562 -3.3362 16 7 10.7318 5.8106 -4.6504 17 14 12.2039 6.4629 -2.3958 18 1 12.6922 5.3876 -1.4953 19 1 13.2766 6.8296 -3.3550 20 1 11.8322 7.6531 -1.5892 21 6 7.8181 3.2851 -1.7595 22 6 8.0469 2.1607 -2.7715 23 6 8.5159 0.9557 -2.0684 24 7 8.8790 0.0261 -1.5222 25 6 4.1999 4.9687 -1.6580 26 16 3.0980 4.2529 -0.4840 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.6480 0.5844 1.9557 33 1 5.0264 1.5860 1.4413 34 1 3.5074 2.3588 1.9558 35 1 6.1671 3.3760 -3.7864 36 1 5.8124 5.1196 -3.7383 37 1 8.6658 4.1488 -4.0704 38 1 7.9615 5.7822 -4.0051 39 1 11.5260 6.0917 -5.1313 40 1 8.7513 3.5017 -1.2396 41 1 7.0631 2.9754 -1.0369 42 1 7.1122 1.9400 -3.2870 43 1 8.7974 2.4729 -3.4978 44 1 4.2194 6.0049 -1.9615 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132811561.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:52 Heat of formation + Delta-G solvation = 28.901066 kcal Electronic energy + Delta-G solvation = -24875.977944 eV Core-core repulsion = 21341.756465 eV Total energy + Delta-G solvation = -3534.221478 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -40.05029 -38.60147 -37.39023 -35.77573 -33.36059 -32.63416 -31.13953 -30.34606 -29.49899 -27.52666 -25.68769 -25.16532 -23.63113 -23.02652 -21.76092 -20.11821 -19.45229 -17.90204 -17.20565 -16.68323 -16.26830 -16.02060 -15.96939 -15.28949 -14.77577 -14.44762 -14.21147 -13.97940 -13.86732 -13.55974 -13.28905 -13.18819 -12.96092 -12.75070 -12.37812 -12.27870 -12.13250 -11.98732 -11.92915 -11.68498 -11.51044 -11.40508 -11.22555 -11.10433 -11.01441 -10.75550 -10.58422 -10.16281 -10.01496 -9.94625 -9.53875 -9.33785 -9.22111 -8.63863 -8.47506 -7.39150 -6.08892 -4.10313 0.80814 1.48022 1.90047 2.83470 3.16987 3.18136 3.21330 3.31597 3.36031 3.39263 4.20924 4.38075 4.46650 4.68295 4.75225 4.84859 4.94747 4.99642 5.04456 5.13554 5.26367 5.27229 5.35241 5.46453 5.49460 5.54414 5.58426 5.61745 5.70844 5.79404 5.86479 5.90301 5.99416 6.12926 6.30240 6.38026 6.70222 6.83868 7.12722 7.22532 7.71716 7.83796 7.92244 8.01809 8.06618 8.41616 8.97252 9.54730 11.01297 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017404 B = 0.003134 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.440430 B = 8932.988898 C = 9740.545806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.379 6.379 4 C 0.167 3.833 5 H 0.089 0.911 6 C -0.168 4.168 7 C 0.037 3.963 8 N -0.455 5.455 9 C 0.084 3.916 10 C 0.119 3.881 11 N -0.523 5.523 12 C 0.186 3.814 13 C -0.509 4.509 14 H 0.063 0.937 15 C 0.059 3.941 16 N -0.897 5.897 17 Si 0.895 3.105 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.276 1.276 21 C 0.076 3.924 22 C -0.070 4.070 23 C 0.230 3.770 24 N -0.467 5.467 25 C -0.240 4.240 26 S 0.136 5.864 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.050 0.950 36 H 0.089 0.911 37 H 0.007 0.993 38 H 0.031 0.969 39 H 0.262 0.738 40 H 0.087 0.913 41 H 0.068 0.932 42 H 0.102 0.898 43 H 0.119 0.881 44 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.763 -7.149 7.126 22.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.299 6.299 4 C 0.106 3.894 5 H 0.107 0.893 6 C -0.227 4.227 7 C -0.241 4.241 8 N -0.172 5.172 9 C -0.048 4.048 10 C -0.012 4.012 11 N -0.245 5.245 12 C 0.062 3.938 13 C -0.548 4.548 14 H 0.082 0.918 15 C -0.143 4.143 16 N -0.536 5.536 17 Si 0.723 3.277 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.202 1.202 21 C -0.054 4.054 22 C -0.112 4.112 23 C -0.087 4.087 24 N -0.145 5.145 25 C -0.380 4.380 26 S 0.391 5.609 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.107 0.893 37 H 0.024 0.976 38 H 0.049 0.951 39 H 0.072 0.928 40 H 0.106 0.894 41 H 0.086 0.914 42 H 0.120 0.880 43 H 0.136 0.864 44 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -19.839 -8.048 8.611 23.076 hybrid contribution 1.747 0.105 -1.092 2.063 sum -18.092 -7.943 7.519 21.141 Atomic orbital electron populations 1.21742 0.93489 1.02300 1.03258 1.22545 0.95674 0.83227 1.00417 1.87916 1.19685 1.27134 1.95123 1.20183 0.81798 0.92519 0.94924 0.89331 1.22281 1.02448 1.03169 0.94775 1.26470 0.97953 0.99253 1.00404 1.66040 1.16308 1.26083 1.08745 1.20256 0.98315 0.86377 0.99827 1.20702 0.87989 1.01004 0.91532 1.62422 1.02612 1.28217 1.31296 1.19880 0.88691 0.95054 0.90172 1.21070 0.97183 1.42857 0.93654 0.91842 1.24941 0.98676 0.95848 0.94840 1.69926 1.29456 1.48069 1.06177 0.86608 0.82186 0.79390 0.79548 1.20277 1.21384 1.20150 1.22006 1.01634 0.86528 0.95265 1.20179 1.02998 0.87992 1.00037 1.29324 0.92282 0.94025 0.93112 1.81176 1.10507 1.12355 1.10466 1.26952 1.01595 1.05111 1.04350 1.83860 1.34621 1.02799 1.39653 0.91030 0.91763 0.91748 0.93034 0.93056 0.91377 0.90643 0.91304 0.93250 0.89292 0.97569 0.95097 0.92791 0.89446 0.91376 0.87997 0.86362 0.80419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.28 37.16 0.38 -0.59 16 2 C 0.06 0.46 6.47 37.16 0.24 0.70 16 3 O -0.38 -4.01 9.81 -35.23 -0.35 -4.36 16 4 C 0.17 1.84 3.24 -27.89 -0.09 1.75 16 5 H 0.09 0.97 7.79 -51.93 -0.40 0.56 16 6 C -0.17 -1.61 9.51 37.16 0.35 -1.26 16 7 C 0.04 0.49 6.35 -13.46 -0.09 0.40 16 8 N -0.46 -6.76 9.26 -8.06 -0.07 -6.83 16 9 C 0.08 1.25 5.57 -84.23 -0.47 0.78 16 10 C 0.12 1.87 5.19 -4.98 -0.03 1.85 16 11 N -0.52 -9.88 4.69 -237.51 -1.11 -10.99 16 12 C 0.19 4.24 4.53 -4.97 -0.02 4.22 16 13 C -0.51 -13.13 8.39 -34.44 -0.29 -13.42 16 14 H 0.06 1.65 7.37 -52.49 -0.39 1.26 16 15 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 16 N -0.90 -24.99 13.29 55.43 0.74 -24.26 16 17 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 C 0.08 1.36 4.89 -3.82 -0.02 1.34 16 22 C -0.07 -1.14 5.05 -29.52 -0.15 -1.29 16 23 C 0.23 4.00 15.44 -20.71 -0.32 3.68 16 24 N -0.47 -8.90 18.55 42.22 0.78 -8.12 16 25 C -0.24 -3.18 11.11 29.12 0.32 -2.86 16 26 S 0.14 1.63 23.00 -107.50 -2.47 -0.84 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.39 8.08 -51.93 -0.42 -0.03 16 31 H 0.05 0.34 7.87 -51.93 -0.41 -0.06 16 32 H 0.07 0.53 7.87 -51.93 -0.41 0.12 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.75 6.07 -51.93 -0.31 0.44 16 36 H 0.09 1.33 7.88 -51.93 -0.41 0.92 16 37 H 0.01 0.15 6.02 -51.93 -0.31 -0.16 16 38 H 0.03 0.75 7.91 -51.92 -0.41 0.34 16 39 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.09 1.73 6.97 -51.93 -0.36 1.37 16 41 H 0.07 1.18 6.33 -51.93 -0.33 0.86 16 42 H 0.10 1.50 6.33 -51.93 -0.33 1.17 16 43 H 0.12 2.08 6.29 -51.93 -0.33 1.75 16 44 H 0.18 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 380.79 15.07 5.74 5.74 Total: -1.00 -29.46 380.79 -8.53 -37.99 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -6.49 Total: -0.99 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -0.27 Total: -3.24 kcal Atomic # 7 Polarization: -50.53 SS G_CDS: 0.33 Total: -50.20 kcal Atomic # 8 Polarization: -4.01 SS G_CDS: -0.35 Total: -4.36 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 1.63 SS G_CDS: -2.47 Total: -0.84 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.46 -8.53 -37.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132811561.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.894 kcal (2) G-P(sol) polarization free energy of solvation -29.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds