Wall clock time and date at job start Tue Mar 31 2020 13:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34223 * 117.00189 * 2 1 4 4 O 1.20824 * 120.00198 * 0.02562 * 3 2 1 5 5 C 1.50706 * 120.00122 * 180.02562 * 3 2 1 6 6 H 1.08997 * 109.46628 * 31.56391 * 5 3 2 7 7 C 1.50695 * 109.47130 * 271.56419 * 5 3 2 8 8 C 1.38184 * 119.94224 * 285.58849 * 7 5 3 9 9 C 1.38771 * 120.05222 * 179.76585 * 8 7 5 10 10 O 1.35894 * 120.02634 * 180.23396 * 9 8 7 11 11 C 1.42906 * 116.99884 * 180.29667 * 10 9 8 12 12 C 1.38634 * 119.94466 * 0.52811 * 9 8 7 13 13 C 1.38637 * 119.89107 * 359.73114 * 12 9 8 14 14 O 1.35903 * 120.02677 * 179.97438 * 13 12 9 15 15 C 1.42901 * 116.99762 * 0.02562 * 14 13 12 16 16 C 1.38175 * 119.94683 * 105.86060 * 7 5 3 17 17 N 1.46897 * 109.46937 * 151.56105 * 5 3 2 18 18 C 1.46896 * 111.00331 * 302.27853 * 17 5 3 19 19 C 1.46905 * 110.99500 * 178.33023 * 17 5 3 20 20 C 1.50703 * 109.46955 * 189.99872 * 19 17 5 21 21 H 1.08007 * 119.99825 * 0.02562 * 20 19 17 22 22 C 1.37876 * 119.99850 * 179.97438 * 20 19 17 23 23 N 1.31516 * 120.00133 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99864 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47175 * 89.99827 * 24 22 20 26 26 H 1.48494 * 109.47155 * 209.99757 * 24 22 20 27 27 H 1.48504 * 109.47121 * 330.00417 * 24 22 20 28 28 H 1.09004 * 109.46791 * 299.99709 * 1 2 3 29 29 H 1.08996 * 109.47685 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47571 * 59.99720 * 1 2 3 31 31 H 1.07994 * 119.97443 * 0.02562 * 8 7 5 32 32 H 1.08996 * 109.46991 * 179.97438 * 11 10 9 33 33 H 1.09002 * 109.47121 * 300.00063 * 11 10 9 34 34 H 1.09000 * 109.46734 * 60.00460 * 11 10 9 35 35 H 1.07999 * 120.05471 * 179.74151 * 12 9 8 36 36 H 1.09001 * 109.47114 * 180.02562 * 15 14 13 37 37 H 1.08999 * 109.47064 * 299.99143 * 15 14 13 38 38 H 1.08992 * 109.47650 * 59.99934 * 15 14 13 39 39 H 1.07992 * 119.97269 * 359.97438 * 16 7 5 40 40 H 1.09003 * 109.46542 * 65.31655 * 18 17 5 41 41 H 1.08996 * 109.47220 * 185.31184 * 18 17 5 42 42 H 1.08994 * 109.47529 * 305.31462 * 18 17 5 43 43 H 1.08998 * 109.47366 * 309.99998 * 19 17 5 44 44 H 1.09003 * 109.47405 * 70.00289 * 19 17 5 45 45 H 0.96999 * 119.99960 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9747 0.4195 -0.5389 7 6 4.0706 1.2620 1.4194 8 6 3.9383 2.3887 2.2085 9 6 4.3974 2.3779 3.5180 10 8 4.2628 3.4847 4.2949 11 6 4.7639 3.4044 5.6308 12 6 4.9991 1.2392 4.0310 13 6 5.1355 0.1118 3.2356 14 8 5.7253 -1.0058 3.7355 15 6 6.1811 -0.9488 5.0887 16 6 4.6695 0.1257 1.9286 17 7 3.9913 2.5167 -0.6601 18 6 3.4713 2.5889 -2.0320 19 6 5.4545 2.6470 -0.6442 20 6 5.8406 4.0301 -1.1017 21 1 5.0755 4.7412 -1.3763 22 6 7.1704 4.3878 -1.1686 23 7 8.1020 3.5220 -0.8337 24 14 7.6490 6.1024 -1.7350 25 1 7.7206 7.0094 -0.5614 26 1 8.9744 6.0512 -2.4026 27 1 6.6322 6.6096 -2.6912 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 -0.8899 31 1 3.4734 3.2770 1.8070 32 1 4.5938 4.3529 6.1403 33 1 4.2477 2.6068 6.1652 34 1 5.8328 3.1925 5.6057 35 1 5.3608 1.2302 5.0485 36 1 6.6309 -1.9036 5.3611 37 1 6.9228 -0.1564 5.1892 38 1 5.3378 -0.7430 5.7478 39 1 4.7753 -0.7523 1.3087 40 1 2.3836 2.6554 -2.0052 41 1 3.8770 3.4703 -2.5284 42 1 3.7672 1.6946 -2.5803 43 1 5.8229 2.4832 0.3685 44 1 5.8925 1.9072 -1.3143 45 1 9.0376 3.7738 -0.8805 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000137827201.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:09 Heat of formation + Delta-G solvation = -112.012078 kcal Electronic energy + Delta-G solvation = -28650.118405 eV Core-core repulsion = 24634.740852 eV Total energy + Delta-G solvation = -4015.377553 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.66997 -40.02113 -38.63183 -37.61507 -36.13492 -35.40877 -32.59990 -30.97335 -30.08334 -28.56522 -27.87047 -27.26104 -26.51240 -26.23949 -24.23569 -22.21805 -21.66050 -21.24444 -19.70431 -18.24441 -17.44852 -16.78567 -16.64990 -16.13169 -15.88451 -15.83021 -15.73779 -15.55612 -15.36860 -14.71610 -14.58496 -14.19288 -14.08058 -13.60405 -13.16583 -12.84660 -12.70827 -12.50871 -12.36589 -12.04437 -11.97887 -11.81302 -11.62372 -11.50170 -11.30491 -11.02112 -10.94179 -10.91714 -10.71629 -10.61859 -10.48396 -10.44304 -10.05624 -9.75735 -9.21106 -8.45629 -8.29760 -7.67476 -7.38120 -5.99529 -4.00199 1.46049 1.80015 2.51747 2.87239 3.33366 3.35687 3.41300 3.43953 3.45437 3.99461 4.45701 4.78073 4.92006 4.98282 5.05071 5.09694 5.11660 5.17413 5.17719 5.22812 5.26111 5.36561 5.38670 5.40111 5.45753 5.48155 5.53548 5.57143 5.81880 6.03119 6.14834 6.25052 6.42883 6.52168 6.59177 6.75090 6.79496 6.95239 7.21390 7.28412 7.33784 7.71163 7.76556 7.96452 8.11598 8.14653 8.48646 9.06255 9.62994 11.11315 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.008145 B = 0.005579 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3436.896178 B = 5018.061585 C = 6891.605275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.362 6.362 3 C 0.470 3.530 4 O -0.480 6.480 5 C 0.137 3.863 6 H 0.075 0.925 7 C 0.001 3.999 8 C -0.132 4.132 9 C 0.158 3.842 10 O -0.310 6.310 11 C 0.028 3.972 12 C -0.290 4.290 13 C 0.156 3.844 14 O -0.315 6.315 15 C 0.029 3.971 16 C -0.167 4.167 17 N -0.515 5.515 18 C 0.028 3.972 19 C 0.193 3.807 20 C -0.505 4.505 21 H 0.065 0.935 22 C 0.057 3.943 23 N -0.896 5.896 24 Si 0.898 3.102 25 H -0.280 1.280 26 H -0.288 1.288 27 H -0.273 1.273 28 H 0.060 0.940 29 H 0.097 0.903 30 H 0.061 0.939 31 H 0.147 0.853 32 H 0.098 0.902 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.131 0.869 36 H 0.098 0.902 37 H 0.054 0.946 38 H 0.051 0.949 39 H 0.133 0.867 40 H 0.053 0.947 41 H 0.087 0.913 42 H 0.014 0.986 43 H 0.042 0.958 44 H -0.005 1.005 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.918 -9.478 11.034 17.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.279 6.279 3 C 0.310 3.690 4 O -0.364 6.364 5 C 0.027 3.973 6 H 0.092 0.908 7 C 0.000 4.000 8 C -0.151 4.151 9 C 0.112 3.888 10 O -0.223 6.223 11 C -0.067 4.067 12 C -0.310 4.310 13 C 0.111 3.889 14 O -0.228 6.228 15 C -0.067 4.067 16 C -0.186 4.186 17 N -0.241 5.241 18 C -0.121 4.121 19 C 0.070 3.930 20 C -0.543 4.543 21 H 0.083 0.917 22 C -0.144 4.144 23 N -0.536 5.536 24 Si 0.725 3.275 25 H -0.207 1.207 26 H -0.214 1.214 27 H -0.198 1.198 28 H 0.079 0.921 29 H 0.116 0.884 30 H 0.079 0.921 31 H 0.165 0.835 32 H 0.116 0.884 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.148 0.852 36 H 0.116 0.884 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.151 0.849 40 H 0.071 0.929 41 H 0.105 0.895 42 H 0.032 0.968 43 H 0.060 0.940 44 H 0.012 0.988 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.203 -8.790 11.170 16.933 hybrid contribution 0.842 0.290 -0.229 0.920 sum -8.361 -8.499 10.941 16.182 Atomic orbital electron populations 1.23194 0.76969 1.03229 1.02393 1.86528 1.22925 1.33971 1.84500 1.23630 0.91550 0.81250 0.72528 1.90637 1.66443 1.36064 1.43282 1.20016 0.86732 0.96613 0.93916 0.90771 1.18679 0.96170 0.92446 0.92739 1.20288 1.04468 0.99992 0.90355 1.18646 0.94318 0.84984 0.90837 1.86129 1.77194 1.34692 1.24241 1.23011 0.98881 1.03233 0.81562 1.21177 1.13132 0.94887 1.01786 1.18454 0.92858 0.85072 0.92560 1.86065 1.73091 1.34424 1.29211 1.23004 0.98937 1.03504 0.81214 1.20082 1.05327 0.99573 0.93646 1.62112 1.16389 1.28536 1.17065 1.22392 0.99132 1.01494 0.89046 1.19866 0.78142 0.97209 0.97831 1.21091 0.91693 0.97635 1.43898 0.91656 1.24949 0.96426 0.97389 0.95658 1.69967 1.00317 1.34615 1.48691 0.86503 0.77655 0.84461 0.78830 1.20653 1.21400 1.19811 0.92084 0.88440 0.92065 0.83509 0.88367 0.93119 0.92771 0.85175 0.88404 0.92720 0.93004 0.84933 0.92857 0.89476 0.96800 0.94012 0.98758 0.92978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.56 101.05 1.07 1.47 16 2 O -0.36 -5.55 10.56 -39.24 -0.41 -5.96 16 3 C 0.47 8.48 6.08 36.01 0.22 8.70 16 4 O -0.48 -9.61 15.14 -18.75 -0.28 -9.89 16 5 C 0.14 2.64 2.16 -70.02 -0.15 2.49 16 6 H 0.07 1.35 7.94 -51.93 -0.41 0.93 16 7 C 0.00 0.01 3.43 -104.67 -0.36 -0.35 16 8 C -0.13 -2.63 8.62 -39.40 -0.34 -2.97 16 9 C 0.16 2.82 6.68 -39.24 -0.26 2.55 16 10 O -0.31 -5.15 10.50 -19.41 -0.20 -5.35 16 11 C 0.03 0.32 9.81 101.05 0.99 1.31 16 12 C -0.29 -4.54 8.02 -39.29 -0.32 -4.86 16 13 C 0.16 2.55 6.68 -39.24 -0.26 2.29 16 14 O -0.31 -4.57 10.50 -19.43 -0.20 -4.77 16 15 C 0.03 0.28 9.81 101.05 0.99 1.27 16 16 C -0.17 -2.92 9.60 -39.41 -0.38 -3.30 16 17 N -0.51 -11.44 3.84 -239.14 -0.92 -12.36 16 18 C 0.03 0.56 8.98 60.06 0.54 1.10 16 19 C 0.19 5.02 4.45 -4.97 -0.02 5.00 16 20 C -0.50 -14.18 8.38 -34.44 -0.29 -14.47 16 21 H 0.07 1.83 7.17 -52.48 -0.38 1.45 16 22 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 23 N -0.90 -26.63 13.29 55.43 0.74 -25.90 16 24 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 27 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 28 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 29 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 31 H 0.15 3.20 7.89 -52.49 -0.41 2.78 16 32 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 34 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 35 H 0.13 1.62 4.54 -52.49 -0.24 1.38 16 36 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 38 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 39 H 0.13 2.10 7.99 -52.49 -0.42 1.68 16 40 H 0.05 1.02 6.40 -51.93 -0.33 0.69 16 41 H 0.09 1.87 6.66 -51.93 -0.35 1.52 16 42 H 0.01 0.26 8.13 -51.93 -0.42 -0.16 16 43 H 0.04 1.16 6.34 -51.93 -0.33 0.83 16 44 H -0.01 -0.15 8.12 -51.93 -0.42 -0.57 16 45 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 374.23 15.07 5.64 5.64 Total: -1.00 -33.59 374.23 -5.89 -39.48 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -6.55 Total: 0.49 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: 1.33 Total: 1.78 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: -0.18 Total: -38.25 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -1.11 Total: -25.98 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.59 -5.89 -39.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000137827201.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.535 kcal (2) G-P(sol) polarization free energy of solvation -33.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds