Wall clock time and date at job start Tue Mar 31 2020 13:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34223 * 117.00189 * 2 1 4 4 O 1.20824 * 120.00198 * 0.02562 * 3 2 1 5 5 C 1.50706 * 120.00122 * 180.02562 * 3 2 1 6 6 H 1.08997 * 109.46628 * 31.56391 * 5 3 2 7 7 C 1.50695 * 109.47130 * 271.56419 * 5 3 2 8 8 C 1.38184 * 119.94224 * 285.58849 * 7 5 3 9 9 C 1.38771 * 120.05222 * 179.76585 * 8 7 5 10 10 O 1.35894 * 120.02634 * 180.23396 * 9 8 7 11 11 C 1.42906 * 116.99884 * 180.29667 * 10 9 8 12 12 C 1.38634 * 119.94466 * 0.52811 * 9 8 7 13 13 C 1.38637 * 119.89107 * 359.73114 * 12 9 8 14 14 O 1.35903 * 120.02677 * 179.97438 * 13 12 9 15 15 C 1.42901 * 116.99762 * 0.02562 * 14 13 12 16 16 C 1.38175 * 119.94683 * 105.86060 * 7 5 3 17 17 N 1.46897 * 109.46937 * 151.56105 * 5 3 2 18 18 C 1.46896 * 111.00331 * 302.27853 * 17 5 3 19 19 C 1.46905 * 110.99500 * 178.33023 * 17 5 3 20 20 C 1.50703 * 109.46955 * 189.99872 * 19 17 5 21 21 H 1.08007 * 119.99825 * 0.02562 * 20 19 17 22 22 C 1.37876 * 119.99850 * 179.97438 * 20 19 17 23 23 N 1.31516 * 120.00133 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99864 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47175 * 89.99827 * 24 22 20 26 26 H 1.48494 * 109.47155 * 209.99757 * 24 22 20 27 27 H 1.48504 * 109.47121 * 330.00417 * 24 22 20 28 28 H 1.09004 * 109.46791 * 299.99709 * 1 2 3 29 29 H 1.08996 * 109.47685 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47571 * 59.99720 * 1 2 3 31 31 H 1.07994 * 119.97443 * 0.02562 * 8 7 5 32 32 H 1.08996 * 109.46991 * 179.97438 * 11 10 9 33 33 H 1.09002 * 109.47121 * 300.00063 * 11 10 9 34 34 H 1.09000 * 109.46734 * 60.00460 * 11 10 9 35 35 H 1.07999 * 120.05471 * 179.74151 * 12 9 8 36 36 H 1.09001 * 109.47114 * 180.02562 * 15 14 13 37 37 H 1.08999 * 109.47064 * 299.99143 * 15 14 13 38 38 H 1.08992 * 109.47650 * 59.99934 * 15 14 13 39 39 H 1.07992 * 119.97269 * 359.97438 * 16 7 5 40 40 H 1.09003 * 109.46542 * 65.31655 * 18 17 5 41 41 H 1.08996 * 109.47220 * 185.31184 * 18 17 5 42 42 H 1.08994 * 109.47529 * 305.31462 * 18 17 5 43 43 H 1.08998 * 109.47366 * 309.99998 * 19 17 5 44 44 H 1.09003 * 109.47405 * 70.00289 * 19 17 5 45 45 H 0.96999 * 119.99960 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9747 0.4195 -0.5389 7 6 4.0706 1.2620 1.4194 8 6 3.9383 2.3887 2.2085 9 6 4.3974 2.3779 3.5180 10 8 4.2628 3.4847 4.2949 11 6 4.7639 3.4044 5.6308 12 6 4.9991 1.2392 4.0310 13 6 5.1355 0.1118 3.2356 14 8 5.7253 -1.0058 3.7355 15 6 6.1811 -0.9488 5.0887 16 6 4.6695 0.1257 1.9286 17 7 3.9913 2.5167 -0.6601 18 6 3.4713 2.5889 -2.0320 19 6 5.4545 2.6470 -0.6442 20 6 5.8406 4.0301 -1.1017 21 1 5.0755 4.7412 -1.3763 22 6 7.1704 4.3878 -1.1686 23 7 8.1020 3.5220 -0.8337 24 14 7.6490 6.1024 -1.7350 25 1 7.7206 7.0094 -0.5614 26 1 8.9744 6.0512 -2.4026 27 1 6.6322 6.6096 -2.6912 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 -0.8899 31 1 3.4734 3.2770 1.8070 32 1 4.5938 4.3529 6.1403 33 1 4.2477 2.6068 6.1652 34 1 5.8328 3.1925 5.6057 35 1 5.3608 1.2302 5.0485 36 1 6.6309 -1.9036 5.3611 37 1 6.9228 -0.1564 5.1892 38 1 5.3378 -0.7430 5.7478 39 1 4.7753 -0.7523 1.3087 40 1 2.3836 2.6554 -2.0052 41 1 3.8770 3.4703 -2.5284 42 1 3.7672 1.6946 -2.5803 43 1 5.8229 2.4832 0.3685 44 1 5.8925 1.9072 -1.3143 45 1 9.0376 3.7738 -0.8805 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000137827201.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:09 Heat of formation + Delta-G solvation = -134.609443 kcal Electronic energy + Delta-G solvation = -28651.098300 eV Core-core repulsion = 24634.740852 eV Total energy + Delta-G solvation = -4016.357448 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.03386 -41.29811 -39.77626 -39.06128 -37.46513 -36.95648 -34.68760 -32.45208 -31.30482 -29.99116 -29.05970 -28.73638 -27.63302 -27.45632 -26.09167 -23.54482 -23.01166 -22.95008 -21.13520 -19.51740 -18.94484 -18.46349 -17.93167 -17.54160 -17.30876 -17.05188 -16.99416 -16.85213 -16.60933 -16.38209 -15.76267 -15.71645 -15.60050 -15.06996 -14.48900 -14.28939 -14.09374 -13.95843 -13.65342 -13.48049 -13.30855 -13.16553 -12.92757 -12.81680 -12.72936 -12.57308 -12.45991 -12.41332 -12.22045 -12.15083 -12.00875 -11.77616 -11.75799 -11.35852 -11.17123 -10.58391 -9.64947 -9.16848 -8.99810 -8.17843 -6.26218 0.11780 0.44880 1.09387 1.41446 1.43193 1.52904 1.58956 2.23393 2.33696 2.42253 2.64502 3.14539 3.24240 3.54351 3.82092 3.91575 4.00681 4.07373 4.09247 4.32238 4.32807 4.34103 4.35853 4.37157 4.39699 4.39885 4.46655 4.60168 4.66118 4.69297 4.71149 4.76421 5.00148 5.13473 5.15671 5.20461 5.23760 5.29947 5.47223 5.52016 5.65783 6.00729 6.18170 6.20038 6.43194 6.50943 6.74088 6.87172 7.41599 8.93256 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.008145 B = 0.005579 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3436.896178 B = 5018.061585 C = 6891.605275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.361 6.361 3 C 0.480 3.520 4 O -0.506 6.506 5 C 0.133 3.867 6 H 0.084 0.916 7 C -0.010 4.010 8 C -0.164 4.164 9 C 0.153 3.847 10 O -0.334 6.334 11 C 0.016 3.984 12 C -0.283 4.283 13 C 0.161 3.839 14 O -0.325 6.325 15 C 0.015 3.985 16 C -0.182 4.182 17 N -0.526 5.526 18 C 0.033 3.967 19 C 0.216 3.784 20 C -0.521 4.521 21 H 0.060 0.940 22 C 0.008 3.992 23 N -0.929 5.929 24 Si 0.964 3.036 25 H -0.277 1.277 26 H -0.280 1.280 27 H -0.265 1.265 28 H 0.060 0.940 29 H 0.138 0.862 30 H 0.064 0.936 31 H 0.115 0.885 32 H 0.121 0.879 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.166 0.834 36 H 0.126 0.874 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.144 0.856 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.026 0.974 43 H 0.018 0.982 44 H -0.029 1.029 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.041 -10.306 12.478 18.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.277 6.277 3 C 0.322 3.678 4 O -0.393 6.393 5 C 0.024 3.976 6 H 0.102 0.898 7 C -0.011 4.011 8 C -0.184 4.184 9 C 0.107 3.893 10 O -0.248 6.248 11 C -0.078 4.078 12 C -0.302 4.302 13 C 0.115 3.885 14 O -0.238 6.238 15 C -0.079 4.079 16 C -0.201 4.201 17 N -0.252 5.252 18 C -0.115 4.115 19 C 0.090 3.910 20 C -0.559 4.559 21 H 0.078 0.922 22 C -0.191 4.191 23 N -0.569 5.569 24 Si 0.789 3.211 25 H -0.203 1.203 26 H -0.205 1.205 27 H -0.190 1.190 28 H 0.079 0.921 29 H 0.156 0.844 30 H 0.083 0.917 31 H 0.133 0.867 32 H 0.139 0.861 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.183 0.817 36 H 0.144 0.856 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.162 0.838 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.045 0.955 43 H 0.036 0.964 44 H -0.012 1.012 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.348 -9.644 12.627 18.435 hybrid contribution 0.834 0.434 -0.532 1.081 sum -8.514 -9.210 12.095 17.424 Atomic orbital electron populations 1.23607 0.74342 1.05958 1.02617 1.86498 1.25357 1.32046 1.83762 1.23242 0.90924 0.81705 0.71957 1.90622 1.66824 1.37065 1.44743 1.20040 0.88127 0.95337 0.94139 0.89801 1.18697 0.96937 0.92976 0.92490 1.20153 1.06719 0.99420 0.92071 1.18712 0.94050 0.86090 0.90413 1.86101 1.77598 1.34552 1.26527 1.23411 0.99497 1.05609 0.79293 1.21435 1.11996 0.93594 1.03218 1.18541 0.91929 0.85838 0.92226 1.86067 1.72563 1.33413 1.31771 1.23418 0.99910 1.05478 0.79110 1.20243 1.05630 0.99447 0.94800 1.61922 1.14031 1.31023 1.18213 1.22335 0.99593 1.01360 0.88225 1.19412 0.80369 0.95644 0.95527 1.21371 0.91991 0.98522 1.44017 0.92184 1.25792 0.96313 1.01397 0.95581 1.70082 1.00686 1.36609 1.49566 0.85457 0.77608 0.79486 0.78514 1.20256 1.20535 1.18952 0.92104 0.84446 0.91698 0.86678 0.86099 0.90781 0.92039 0.81688 0.85634 0.92210 0.91121 0.83850 0.91648 0.91006 0.95514 0.96353 1.01165 0.92735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.56 113.37 1.20 1.77 16 2 O -0.36 -10.74 10.56 -51.34 -0.54 -11.28 16 3 C 0.48 17.57 6.08 71.24 0.43 18.00 16 4 O -0.51 -20.70 15.14 21.97 0.33 -20.37 16 5 C 0.13 5.31 2.16 43.42 0.09 5.40 16 6 H 0.08 3.12 7.94 -2.39 -0.02 3.11 16 7 C -0.01 -0.40 3.43 -19.89 -0.07 -0.47 16 8 C -0.16 -6.89 8.62 22.38 0.19 -6.70 16 9 C 0.15 5.55 6.68 22.49 0.15 5.70 16 10 O -0.33 -11.11 10.50 -92.36 -0.97 -12.08 16 11 C 0.02 0.32 9.81 113.37 1.11 1.43 16 12 C -0.28 -8.51 8.02 22.46 0.18 -8.33 16 13 C 0.16 5.12 6.68 22.49 0.15 5.27 16 14 O -0.32 -8.76 10.50 -92.45 -0.97 -9.73 16 15 C 0.01 0.24 9.81 113.37 1.11 1.36 16 16 C -0.18 -6.44 9.60 22.38 0.21 -6.22 16 17 N -0.53 -24.38 3.84 -910.51 -3.50 -27.88 16 18 C 0.03 1.37 8.98 127.69 1.15 2.51 16 19 C 0.22 11.72 4.45 85.56 0.38 12.10 16 20 C -0.52 -30.19 8.38 25.60 0.21 -29.97 16 21 H 0.06 3.47 7.17 -2.91 -0.02 3.45 16 22 C 0.01 0.44 5.46 84.65 0.46 0.90 16 23 N -0.93 -56.25 13.29 21.45 0.28 -55.97 16 24 Si 0.96 45.31 29.54 68.60 2.03 47.34 16 25 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 26 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 27 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 28 H 0.06 1.29 8.13 -2.38 -0.02 1.27 16 29 H 0.14 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.06 1.33 8.13 -2.39 -0.02 1.31 16 31 H 0.12 5.44 7.89 -2.91 -0.02 5.42 16 32 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.07 1.15 7.66 -2.39 -0.02 1.14 16 34 H 0.06 1.16 7.66 -2.39 -0.02 1.14 16 35 H 0.17 3.60 4.54 -2.91 -0.01 3.59 16 36 H 0.13 1.37 8.14 -2.39 -0.02 1.36 16 37 H 0.06 0.94 7.66 -2.39 -0.02 0.92 16 38 H 0.07 0.92 7.66 -2.39 -0.02 0.90 16 39 H 0.14 4.57 7.99 -2.91 -0.02 4.55 16 40 H 0.06 2.55 6.40 -2.39 -0.02 2.54 16 41 H 0.07 3.18 6.66 -2.39 -0.02 3.16 16 42 H 0.03 1.02 8.13 -2.39 -0.02 1.00 16 43 H 0.02 1.08 6.34 -2.39 -0.02 1.07 16 44 H -0.03 -1.69 8.12 -2.39 -0.02 -1.71 16 45 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -75.18 374.23 4.63 -70.55 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: 1.00 Total: 16.67 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 6.97 Total: 2.75 kcal Atomic # 7 Polarization: -80.63 SS G_CDS: -3.21 Total: -83.85 kcal Atomic # 8 Polarization: -51.31 SS G_CDS: -2.15 Total: -53.46 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -75.18 4.63 -70.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000137827201.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.060 kcal (2) G-P(sol) polarization free energy of solvation -75.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds