Wall clock time and date at job start Tue Mar 31 2020 13:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34239 * 116.99607 * 2 1 4 4 O 1.20827 * 119.99723 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99557 * 179.97438 * 3 2 1 6 6 H 1.08999 * 109.47326 * 300.00105 * 5 3 2 7 7 C 1.50704 * 109.46980 * 60.00305 * 5 3 2 8 8 C 1.38177 * 119.94434 * 80.22992 * 7 5 3 9 9 C 1.38777 * 120.04764 * 180.23231 * 8 7 5 10 10 O 1.35905 * 120.02101 * 179.78997 * 9 8 7 11 11 C 1.42901 * 116.99604 * 179.72187 * 10 9 8 12 12 C 1.38631 * 119.94881 * 359.51135 * 9 8 7 13 13 C 1.38630 * 119.89004 * 0.25393 * 12 9 8 14 14 O 1.35902 * 120.02702 * 180.02562 * 13 12 9 15 15 C 1.42898 * 117.00078 * 359.97438 * 14 13 12 16 16 C 1.38174 * 119.94243 * 259.99483 * 7 5 3 17 17 N 1.46900 * 109.46510 * 179.97438 * 5 3 2 18 18 C 1.46901 * 110.99758 * 183.95278 * 17 5 3 19 19 C 1.46897 * 110.99790 * 60.00505 * 17 5 3 20 20 C 1.50705 * 109.47217 * 189.99557 * 19 17 5 21 21 H 1.08000 * 119.99721 * 359.97438 * 20 19 17 22 22 C 1.37875 * 120.00140 * 180.02562 * 20 19 17 23 23 N 1.31512 * 120.00365 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99935 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47444 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47168 * 119.99699 * 24 22 20 27 27 H 1.48494 * 109.47240 * 239.99836 * 24 22 20 28 28 H 1.09003 * 109.47113 * 299.99710 * 1 2 3 29 29 H 1.08996 * 109.47012 * 60.00284 * 1 2 3 30 30 H 1.09004 * 109.46275 * 180.02562 * 1 2 3 31 31 H 1.07996 * 119.97788 * 0.02562 * 8 7 5 32 32 H 1.08995 * 109.47253 * 179.97438 * 11 10 9 33 33 H 1.08998 * 109.47043 * 300.00197 * 11 10 9 34 34 H 1.08999 * 109.47144 * 59.99795 * 11 10 9 35 35 H 1.07999 * 120.05200 * 180.23549 * 12 9 8 36 36 H 1.08996 * 109.47248 * 300.00331 * 15 14 13 37 37 H 1.09000 * 109.46782 * 59.99906 * 15 14 13 38 38 H 1.08994 * 109.47222 * 179.97438 * 15 14 13 39 39 H 1.07998 * 119.97581 * 359.97438 * 16 7 5 40 40 H 1.09003 * 109.47132 * 60.00341 * 18 17 5 41 41 H 1.08998 * 109.46993 * 180.02562 * 18 17 5 42 42 H 1.09000 * 109.47550 * 300.00516 * 18 17 5 43 43 H 1.09001 * 109.47332 * 309.99699 * 19 17 5 44 44 H 1.09002 * 109.47442 * 70.00015 * 19 17 5 45 45 H 0.96996 * 120.00222 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9557 0.7810 0.8908 7 6 4.1056 0.5916 -1.2296 8 6 4.1097 1.2554 -2.4415 9 6 4.6013 0.6264 -3.5766 10 8 4.6012 1.2783 -4.7692 11 6 5.1278 0.5722 -5.8944 12 6 5.0980 -0.6651 -3.4920 13 6 5.0972 -1.3271 -2.2740 14 8 5.5839 -2.5931 -2.1878 15 6 6.0799 -3.1809 -3.3921 16 6 4.5996 -0.6959 -1.1427 17 7 3.9827 2.6837 -0.0002 18 6 5.4440 2.8007 -0.0942 19 6 3.4739 3.3836 1.1869 20 6 3.7060 4.8649 1.0347 21 1 4.1840 5.2480 0.1453 22 6 3.3090 5.7309 2.0314 23 7 2.7273 5.2645 3.1147 24 14 3.5960 7.5670 1.8423 25 1 4.2624 7.8327 0.5420 26 1 2.2934 8.2788 1.8860 27 1 4.4609 8.0493 2.9488 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0278 0.0005 31 1 3.7269 2.2632 -2.5060 32 1 5.0682 1.2043 -6.7804 33 1 6.1685 0.3099 -5.7041 34 1 4.5480 -0.3363 -6.0571 35 1 5.4845 -1.1548 -4.3736 36 1 5.2803 -3.2242 -4.1314 37 1 6.9007 -2.5773 -3.7796 38 1 6.4377 -4.1891 -3.1837 39 1 4.5993 -1.2111 -0.1936 40 1 5.7872 2.3343 -1.0177 41 1 5.7251 3.8538 -0.0923 42 1 5.9042 2.3006 0.7581 43 1 2.4060 3.1921 1.2918 44 1 3.9965 3.0233 2.0731 45 1 2.4476 5.8738 3.8157 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000137827335.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:12 Heat of formation + Delta-G solvation = -104.913561 kcal Electronic energy + Delta-G solvation = -28437.382413 eV Core-core repulsion = 24422.312675 eV Total energy + Delta-G solvation = -4015.069738 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.76516 -39.99031 -38.85928 -37.65225 -36.22550 -35.21059 -32.61236 -31.00364 -30.29761 -28.58626 -27.89718 -27.09062 -26.67874 -26.57300 -23.95668 -22.43197 -21.75646 -21.14132 -19.77012 -18.48519 -17.23087 -16.91381 -16.47756 -16.10700 -16.03030 -15.98790 -15.84505 -15.74339 -15.59132 -14.81356 -14.58964 -14.08352 -13.99515 -13.60264 -13.24632 -12.93443 -12.72692 -12.68301 -12.28732 -12.18505 -11.93018 -11.77399 -11.72868 -11.68511 -11.30927 -11.25571 -11.13934 -10.88280 -10.65967 -10.58154 -10.51458 -10.23998 -9.97723 -9.56935 -9.05035 -8.54358 -8.28752 -7.91741 -7.35046 -5.92741 -3.91614 1.26454 1.55051 2.72567 3.00639 3.14888 3.21075 3.37958 3.44921 3.50090 3.77598 4.49738 4.63906 4.77063 4.84440 4.89922 4.91214 4.96108 5.05050 5.18775 5.20505 5.24274 5.27127 5.28440 5.37896 5.43030 5.44664 5.49275 5.65669 5.76512 5.87494 6.14914 6.21356 6.30178 6.35061 6.56778 6.71084 6.76208 6.79299 7.10948 7.30657 7.32850 7.48208 7.85044 8.13624 8.19104 8.33646 8.58721 9.13760 9.69995 11.18956 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.013454 B = 0.003840 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.714319 B = 7289.079220 C = 8137.962421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.364 6.364 3 C 0.462 3.538 4 O -0.456 6.456 5 C 0.135 3.865 6 H 0.079 0.921 7 C 0.003 3.997 8 C -0.148 4.148 9 C 0.157 3.843 10 O -0.311 6.311 11 C 0.028 3.972 12 C -0.294 4.294 13 C 0.157 3.843 14 O -0.314 6.314 15 C 0.028 3.972 16 C -0.167 4.167 17 N -0.517 5.517 18 C 0.036 3.964 19 C 0.176 3.824 20 C -0.496 4.496 21 H 0.064 0.936 22 C 0.054 3.946 23 N -0.899 5.899 24 Si 0.897 3.103 25 H -0.272 1.272 26 H -0.285 1.285 27 H -0.286 1.286 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.095 0.905 31 H 0.148 0.852 32 H 0.099 0.901 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.131 0.869 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.099 0.901 39 H 0.134 0.866 40 H 0.053 0.947 41 H 0.083 0.917 42 H 0.015 0.985 43 H 0.061 0.939 44 H -0.012 1.012 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.500 -17.923 -14.701 23.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.281 6.281 3 C 0.301 3.699 4 O -0.338 6.338 5 C 0.025 3.975 6 H 0.097 0.903 7 C 0.002 3.998 8 C -0.167 4.167 9 C 0.111 3.889 10 O -0.224 6.224 11 C -0.067 4.067 12 C -0.314 4.314 13 C 0.112 3.888 14 O -0.227 6.227 15 C -0.067 4.067 16 C -0.186 4.186 17 N -0.243 5.243 18 C -0.112 4.112 19 C 0.052 3.948 20 C -0.535 4.535 21 H 0.082 0.918 22 C -0.147 4.147 23 N -0.539 5.539 24 Si 0.725 3.275 25 H -0.197 1.197 26 H -0.211 1.211 27 H -0.213 1.213 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.113 0.887 31 H 0.166 0.834 32 H 0.117 0.883 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.149 0.851 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.117 0.883 39 H 0.152 0.848 40 H 0.071 0.929 41 H 0.101 0.899 42 H 0.034 0.966 43 H 0.079 0.921 44 H 0.006 0.994 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.918 -17.244 -14.828 23.077 hybrid contribution 0.431 0.423 0.342 0.693 sum 4.349 -16.821 -14.487 22.621 Atomic orbital electron populations 1.23172 0.77015 1.02941 1.02559 1.86488 1.22830 1.33887 1.84939 1.23306 0.91319 0.81415 0.73838 1.90736 1.66072 1.35460 1.41574 1.19983 0.87722 0.93964 0.95800 0.90320 1.18951 0.95300 0.92180 0.93396 1.20363 1.04997 1.02268 0.89085 1.18683 0.94609 0.89945 0.85637 1.86139 1.78696 1.42262 1.15266 1.23022 0.98202 0.97898 0.87579 1.21187 1.14600 0.97190 0.98421 1.18521 0.93531 0.83643 0.93125 1.86083 1.75682 1.26300 1.34673 1.23016 0.98442 0.98627 0.86591 1.20134 1.05747 0.94987 0.97781 1.62084 1.11168 1.05256 1.45801 1.22320 0.86999 1.03115 0.98755 1.20175 0.97523 0.93744 0.83352 1.21093 1.38264 0.90717 1.03438 0.91806 1.24949 0.95489 0.98918 0.95297 1.69970 1.41293 1.34724 1.07955 0.86452 0.77766 0.85333 0.77913 1.19668 1.21100 1.21265 0.91926 0.92165 0.88651 0.83404 0.88262 0.92869 0.92954 0.85146 0.92861 0.92840 0.88309 0.84826 0.92859 0.89855 0.96604 0.92105 0.99426 0.93139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.56 101.05 1.07 1.57 16 2 O -0.36 -6.16 10.48 -39.28 -0.41 -6.57 16 3 C 0.46 9.27 6.88 36.01 0.25 9.51 16 4 O -0.46 -10.85 13.63 -18.75 -0.26 -11.11 16 5 C 0.14 2.58 2.19 -70.01 -0.15 2.42 16 6 H 0.08 1.42 8.00 -51.93 -0.42 1.00 16 7 C 0.00 0.04 3.71 -104.67 -0.39 -0.34 16 8 C -0.15 -2.47 7.98 -39.40 -0.31 -2.78 16 9 C 0.16 2.26 6.68 -39.24 -0.26 2.00 16 10 O -0.31 -4.17 10.50 -19.44 -0.20 -4.38 16 11 C 0.03 0.24 9.81 101.05 0.99 1.23 16 12 C -0.29 -3.64 8.02 -39.29 -0.32 -3.96 16 13 C 0.16 2.09 6.68 -39.24 -0.26 1.83 16 14 O -0.31 -3.70 10.50 -19.43 -0.20 -3.90 16 15 C 0.03 0.21 9.81 101.05 0.99 1.20 16 16 C -0.17 -2.44 9.60 -39.41 -0.38 -2.82 16 17 N -0.52 -11.46 3.75 -239.13 -0.90 -12.36 16 18 C 0.04 0.71 8.94 60.07 0.54 1.24 16 19 C 0.18 4.75 4.32 -4.97 -0.02 4.72 16 20 C -0.50 -14.38 8.46 -34.44 -0.29 -14.67 16 21 H 0.06 1.82 7.12 -52.49 -0.37 1.45 16 22 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 23 N -0.90 -27.58 13.29 55.43 0.74 -26.84 16 24 Si 0.90 22.35 29.54 -169.99 -5.02 17.33 16 25 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 28 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 29 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 30 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.15 2.77 7.70 -52.49 -0.40 2.36 16 32 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 34 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 35 H 0.13 1.22 4.54 -52.49 -0.24 0.99 16 36 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 37 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 38 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.13 1.80 8.03 -52.49 -0.42 1.38 16 40 H 0.05 0.93 6.10 -51.93 -0.32 0.61 16 41 H 0.08 1.74 6.76 -51.93 -0.35 1.39 16 42 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.06 1.80 5.21 -51.93 -0.27 1.53 16 44 H -0.01 -0.34 8.12 -51.93 -0.42 -0.76 16 45 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 371.48 15.07 5.60 5.60 Total: -1.00 -34.88 371.48 -5.78 -40.66 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -6.47 Total: -1.08 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: 1.35 Total: 2.64 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: -0.16 Total: -39.20 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -1.08 Total: -25.96 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.88 -5.78 -40.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000137827335.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.250 kcal (2) G-P(sol) polarization free energy of solvation -34.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds