Wall clock time and date at job start Tue Mar 31 2020 13:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34239 * 116.99607 * 2 1 4 4 O 1.20827 * 119.99723 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99557 * 179.97438 * 3 2 1 6 6 H 1.08999 * 109.47326 * 300.00105 * 5 3 2 7 7 C 1.50704 * 109.46980 * 60.00305 * 5 3 2 8 8 C 1.38177 * 119.94434 * 80.22992 * 7 5 3 9 9 C 1.38777 * 120.04764 * 180.23231 * 8 7 5 10 10 O 1.35905 * 120.02101 * 179.78997 * 9 8 7 11 11 C 1.42901 * 116.99604 * 179.72187 * 10 9 8 12 12 C 1.38631 * 119.94881 * 359.51135 * 9 8 7 13 13 C 1.38630 * 119.89004 * 0.25393 * 12 9 8 14 14 O 1.35902 * 120.02702 * 180.02562 * 13 12 9 15 15 C 1.42898 * 117.00078 * 359.97438 * 14 13 12 16 16 C 1.38174 * 119.94243 * 259.99483 * 7 5 3 17 17 N 1.46900 * 109.46510 * 179.97438 * 5 3 2 18 18 C 1.46901 * 110.99758 * 183.95278 * 17 5 3 19 19 C 1.46897 * 110.99790 * 60.00505 * 17 5 3 20 20 C 1.50705 * 109.47217 * 189.99557 * 19 17 5 21 21 H 1.08000 * 119.99721 * 359.97438 * 20 19 17 22 22 C 1.37875 * 120.00140 * 180.02562 * 20 19 17 23 23 N 1.31512 * 120.00365 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99935 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47444 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47168 * 119.99699 * 24 22 20 27 27 H 1.48494 * 109.47240 * 239.99836 * 24 22 20 28 28 H 1.09003 * 109.47113 * 299.99710 * 1 2 3 29 29 H 1.08996 * 109.47012 * 60.00284 * 1 2 3 30 30 H 1.09004 * 109.46275 * 180.02562 * 1 2 3 31 31 H 1.07996 * 119.97788 * 0.02562 * 8 7 5 32 32 H 1.08995 * 109.47253 * 179.97438 * 11 10 9 33 33 H 1.08998 * 109.47043 * 300.00197 * 11 10 9 34 34 H 1.08999 * 109.47144 * 59.99795 * 11 10 9 35 35 H 1.07999 * 120.05200 * 180.23549 * 12 9 8 36 36 H 1.08996 * 109.47248 * 300.00331 * 15 14 13 37 37 H 1.09000 * 109.46782 * 59.99906 * 15 14 13 38 38 H 1.08994 * 109.47222 * 179.97438 * 15 14 13 39 39 H 1.07998 * 119.97581 * 359.97438 * 16 7 5 40 40 H 1.09003 * 109.47132 * 60.00341 * 18 17 5 41 41 H 1.08998 * 109.46993 * 180.02562 * 18 17 5 42 42 H 1.09000 * 109.47550 * 300.00516 * 18 17 5 43 43 H 1.09001 * 109.47332 * 309.99699 * 19 17 5 44 44 H 1.09002 * 109.47442 * 70.00015 * 19 17 5 45 45 H 0.96996 * 120.00222 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9557 0.7810 0.8908 7 6 4.1056 0.5916 -1.2296 8 6 4.1097 1.2554 -2.4415 9 6 4.6013 0.6264 -3.5766 10 8 4.6012 1.2783 -4.7692 11 6 5.1278 0.5722 -5.8944 12 6 5.0980 -0.6651 -3.4920 13 6 5.0972 -1.3271 -2.2740 14 8 5.5839 -2.5931 -2.1878 15 6 6.0799 -3.1809 -3.3921 16 6 4.5996 -0.6959 -1.1427 17 7 3.9827 2.6837 -0.0002 18 6 5.4440 2.8007 -0.0942 19 6 3.4739 3.3836 1.1869 20 6 3.7060 4.8649 1.0347 21 1 4.1840 5.2480 0.1453 22 6 3.3090 5.7309 2.0314 23 7 2.7273 5.2645 3.1147 24 14 3.5960 7.5670 1.8423 25 1 4.2624 7.8327 0.5420 26 1 2.2934 8.2788 1.8860 27 1 4.4609 8.0493 2.9488 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0278 0.0005 31 1 3.7269 2.2632 -2.5060 32 1 5.0682 1.2043 -6.7804 33 1 6.1685 0.3099 -5.7041 34 1 4.5480 -0.3363 -6.0571 35 1 5.4845 -1.1548 -4.3736 36 1 5.2803 -3.2242 -4.1314 37 1 6.9007 -2.5773 -3.7796 38 1 6.4377 -4.1891 -3.1837 39 1 4.5993 -1.2111 -0.1936 40 1 5.7872 2.3343 -1.0177 41 1 5.7251 3.8538 -0.0923 42 1 5.9042 2.3006 0.7581 43 1 2.4060 3.1921 1.2918 44 1 3.9965 3.0233 2.0731 45 1 2.4476 5.8738 3.8157 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000137827335.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:12 Heat of formation + Delta-G solvation = -129.130057 kcal Electronic energy + Delta-G solvation = -28438.432519 eV Core-core repulsion = 24422.312675 eV Total energy + Delta-G solvation = -4016.119844 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.02747 -41.28945 -39.75704 -39.03900 -37.60780 -36.77795 -34.70222 -32.42886 -31.29803 -29.74011 -29.17902 -28.65582 -27.91958 -27.42501 -25.79252 -23.54592 -23.17630 -22.71631 -21.20098 -19.61751 -18.70183 -18.39242 -17.91774 -17.67891 -17.36665 -17.05866 -16.99660 -16.85148 -16.47866 -16.35437 -15.70474 -15.61067 -15.43534 -15.18436 -14.58105 -14.22153 -14.10651 -14.00676 -13.68541 -13.39315 -13.18508 -13.12967 -12.97341 -12.90364 -12.77230 -12.55448 -12.43043 -12.30769 -12.16811 -12.12923 -12.09342 -11.78185 -11.56378 -11.35312 -11.02359 -10.51479 -9.63658 -9.15533 -8.99208 -8.17444 -6.24850 0.13549 0.44924 1.17078 1.39738 1.41818 1.54903 1.62591 2.25640 2.34873 2.41920 2.63924 3.15901 3.25619 3.50510 3.88565 3.93669 4.01250 4.07799 4.10416 4.31629 4.32751 4.35557 4.40064 4.40300 4.43708 4.48667 4.49092 4.66246 4.68019 4.69616 4.75615 4.79927 5.07236 5.12109 5.16563 5.20810 5.27177 5.39084 5.49592 5.54452 5.65899 6.06701 6.22743 6.25878 6.45878 6.53158 6.80285 6.89525 7.41916 8.94912 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.013454 B = 0.003840 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.714319 B = 7289.079220 C = 8137.962421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.464 3.536 4 O -0.504 6.504 5 C 0.134 3.866 6 H 0.088 0.912 7 C -0.003 4.003 8 C -0.173 4.173 9 C 0.159 3.841 10 O -0.334 6.334 11 C 0.016 3.984 12 C -0.280 4.280 13 C 0.166 3.834 14 O -0.325 6.325 15 C 0.015 3.985 16 C -0.174 4.174 17 N -0.526 5.526 18 C 0.043 3.957 19 C 0.193 3.807 20 C -0.514 4.514 21 H 0.062 0.938 22 C -0.001 4.001 23 N -0.936 5.936 24 Si 0.970 3.030 25 H -0.263 1.263 26 H -0.282 1.282 27 H -0.275 1.275 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.142 0.858 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.166 0.834 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.122 0.878 39 H 0.141 0.859 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.022 0.978 43 H 0.032 0.968 44 H -0.038 1.038 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.926 -19.845 -16.968 26.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.274 6.274 3 C 0.306 3.694 4 O -0.390 6.390 5 C 0.024 3.976 6 H 0.105 0.895 7 C -0.004 4.004 8 C -0.192 4.192 9 C 0.114 3.886 10 O -0.247 6.247 11 C -0.078 4.078 12 C -0.299 4.299 13 C 0.120 3.880 14 O -0.238 6.238 15 C -0.079 4.079 16 C -0.193 4.193 17 N -0.252 5.252 18 C -0.104 4.104 19 C 0.068 3.932 20 C -0.552 4.552 21 H 0.080 0.920 22 C -0.198 4.198 23 N -0.577 5.577 24 Si 0.795 3.205 25 H -0.187 1.187 26 H -0.208 1.208 27 H -0.200 1.200 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.160 0.840 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.184 0.816 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.140 0.860 39 H 0.159 0.841 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.040 0.960 43 H 0.050 0.950 44 H -0.020 1.020 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.366 -19.217 -17.127 26.295 hybrid contribution -0.015 0.806 0.907 1.213 sum 5.351 -18.410 -16.221 25.113 Atomic orbital electron populations 1.23543 0.74910 1.05799 1.02139 1.86474 1.24843 1.31953 1.84096 1.23584 0.91827 0.81560 0.72413 1.90709 1.67110 1.37120 1.44106 1.20025 0.87471 0.92266 0.97832 0.89504 1.18605 0.96809 0.93001 0.91958 1.20143 1.07182 1.01396 0.90527 1.18635 0.94024 0.90509 0.85475 1.86121 1.79037 1.43658 1.15912 1.23410 0.99213 0.98837 0.86364 1.21434 1.13088 0.96047 0.99373 1.18518 0.92447 0.84347 0.92737 1.86087 1.75334 1.25181 1.37222 1.23415 0.99277 0.99745 0.85480 1.20163 1.05922 0.94264 0.98990 1.61870 1.12573 1.07512 1.43230 1.22264 0.85583 1.02361 1.00193 1.19751 0.95614 0.93635 0.84220 1.21415 1.38299 0.92042 1.03470 0.91995 1.25894 0.95008 1.04112 0.94824 1.70103 1.42190 1.36600 1.08820 0.85326 0.77830 0.78942 0.78450 1.18705 1.20765 1.20046 0.92796 0.92275 0.84047 0.86602 0.86412 0.91223 0.91270 0.81647 0.91484 0.91511 0.85996 0.84086 0.90436 0.91509 0.95992 0.95005 1.02032 0.92864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 10.56 113.37 1.20 1.98 16 2 O -0.36 -12.23 10.48 -51.51 -0.54 -12.77 16 3 C 0.46 19.56 6.88 71.24 0.49 20.05 16 4 O -0.50 -25.57 13.63 21.96 0.30 -25.27 16 5 C 0.13 5.31 2.19 43.42 0.10 5.41 16 6 H 0.09 3.26 8.00 -2.39 -0.02 3.24 16 7 C 0.00 -0.09 3.71 -19.89 -0.07 -0.17 16 8 C -0.17 -5.87 7.98 22.38 0.18 -5.69 16 9 C 0.16 4.39 6.68 22.49 0.15 4.54 16 10 O -0.33 -8.46 10.50 -92.48 -0.97 -9.43 16 11 C 0.02 0.21 9.81 113.37 1.11 1.32 16 12 C -0.28 -6.05 8.02 22.46 0.18 -5.87 16 13 C 0.17 3.96 6.68 22.49 0.15 4.11 16 14 O -0.32 -6.54 10.50 -92.44 -0.97 -7.51 16 15 C 0.01 0.15 9.81 113.37 1.11 1.26 16 16 C -0.17 -4.89 9.60 22.38 0.21 -4.67 16 17 N -0.53 -24.54 3.75 -910.48 -3.41 -27.95 16 18 C 0.04 1.76 8.94 127.69 1.14 2.90 16 19 C 0.19 11.03 4.32 85.56 0.37 11.40 16 20 C -0.51 -30.96 8.46 25.60 0.22 -30.74 16 21 H 0.06 3.66 7.12 -2.91 -0.02 3.64 16 22 C 0.00 -0.07 5.46 84.65 0.46 0.40 16 23 N -0.94 -59.27 13.29 21.45 0.28 -58.98 16 24 Si 0.97 46.75 29.54 68.60 2.03 48.78 16 25 H -0.26 -12.17 7.11 99.48 0.71 -11.47 16 26 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 27 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 28 H 0.05 1.54 8.13 -2.39 -0.02 1.52 16 29 H 0.06 1.60 8.13 -2.39 -0.02 1.58 16 30 H 0.14 2.44 8.14 -2.38 -0.02 2.42 16 31 H 0.12 4.62 7.70 -2.91 -0.02 4.60 16 32 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.07 0.72 7.66 -2.39 -0.02 0.70 16 34 H 0.07 0.70 7.66 -2.39 -0.02 0.69 16 35 H 0.17 2.31 4.54 -2.91 -0.01 2.29 16 36 H 0.07 0.53 7.66 -2.39 -0.02 0.51 16 37 H 0.07 0.54 7.66 -2.39 -0.02 0.52 16 38 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.14 3.65 8.03 -2.91 -0.02 3.63 16 40 H 0.08 2.75 6.10 -2.39 -0.01 2.73 16 41 H 0.07 2.89 6.76 -2.39 -0.02 2.88 16 42 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.03 2.02 5.21 -2.39 -0.01 2.01 16 44 H -0.04 -2.29 8.12 -2.39 -0.02 -2.31 16 45 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -79.70 371.48 4.71 -74.99 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: 1.00 Total: 11.94 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: 7.00 Total: 6.21 kcal Atomic # 7 Polarization: -83.80 SS G_CDS: -3.13 Total: -86.93 kcal Atomic # 8 Polarization: -52.81 SS G_CDS: -2.18 Total: -54.99 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Total: -79.70 4.71 -74.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000137827335.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.143 kcal (2) G-P(sol) polarization free energy of solvation -79.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds